Rmu_co8260251.1_g000001

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8260251.1
Physical Location & Seq
Reverse (-)
2 .. 529
528 bp
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UTR
Exon/CDS
Intron
Rmu_co8260251.1_g000001.1.cds

Sequence Viewer

Length: 433 bp
atggggaaaaatgctttggttctggcattttacataaccatatgctgtattgcttttgtaatatcgaagattataatcgcagtcctcatctataggcgatggaagagaaagcacttggttttcgaacatggcttctcaggtgggaaaatggttttgttcagggcaccagtaatgcaatctctgaaatcagatgtgttcttaaagaagacgctgaagttaagcaacaaggacatcattggctcaggagggtatgggacagtttataaacttacaataaatgaaaccatggcctttgctgtgaaaagactgaacagaggaagtgcagatagagatcgaggatttgagagagaacttgaagcaatgggggacataaagcaccggaacattgtgactcttcatggatattatactgctccacattataaccttctca
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

144

Amino Acids

16.4

Weight (kDa)

10.01

Isoelectric Point (pI)

29.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013875)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78530 AT1G78530
fragaria_vesca FvH4_3g17360
malus_domestica MD11G1273500.v1.1
prunus_persica Prupe.4G153600_v2.0.a1
pyrus_communis pycom11g24120
rosa_chinensis RchiOBHm_Chr5g0028881
rosa_laevigata RLG00000033122
rosa_multiflora Rmu_co8260251.1_g000001 Rmu_sc0000638.1_g000038
rosa_roxburghii Rroxscaffold_1G00051000
rosa_rugosa Rorug05G0111200
rosa_samantha Rh5AG203500 Rh5BG201600 Rh5CG222600 Rh5DG205200
rosa_wichuraiana Rw5G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 74, 264, 423
AccB1I GGYRCC 1 cut(s) 163
AcuI CTGAAG 1 cut(s) 233
AgsI TTSAA 1 cut(s) 356
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AoxI GGCC 1 cut(s) 288
AsuII TTCGAA 1 cut(s) 123
BaeGI GKGCMC 1 cut(s) 166
BanI GGYRCC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 212
BccI CCATC 1 cut(s) 93
BfmI CTRYAG 1 cut(s) 91
BmiI GGNNCC 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 212
Bpu10I CCTNAGC 1 cut(s) 241
Bpu14I TTCGAA 1 cut(s) 123
BsaBI GATNNNNATC 2 cut(s) 74, 330
BsaJI CCNNGG 1 cut(s) 285
BsaWI WCCGGW 1 cut(s) 378
Bse1I ACTGG 1 cut(s) 167
Bse3DI GCAATG 1 cut(s) 366
Bse8I GATNNNNATC 2 cut(s) 74, 330
BseDI CCNNGG 1 cut(s) 285
BseJI GATNNNNATC 2 cut(s) 74, 330
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 2 cut(s) 150, 255
BseNI ACTGG 1 cut(s) 167
BseSI GKGCMC 1 cut(s) 166
BsgI GTGCAG 1 cut(s) 342
BshFI GGCC 1 cut(s) 290
BshNI GGYRCC 1 cut(s) 163
BsiSI CCGG 1 cut(s) 379
BslFI GGGAC 2 cut(s) 268, 380
BsmFI GGGAC 2 cut(s) 268, 380
BsnI GGCC 1 cut(s) 290
Bsp119I TTCGAA 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 1 cut(s) 331
Bsp19I CCATGG 1 cut(s) 285
BspANI GGCC 1 cut(s) 290
BspCNI CTCAG 2 cut(s) 149, 254
BspLI GGNNCC 1 cut(s) 165
BspT104I TTCGAA 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 163
BsrDI GCAATG 1 cut(s) 366
BsrI ACTGG 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 285
BssMI GATC 1 cut(s) 331
BssT1I CCWWGG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 259
Bst6I CTCTTC 2 cut(s) 98, 399
BstBI TTCGAA 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 136, 241
BstDSI CCRYGG 1 cut(s) 285
BstKTI GATC 1 cut(s) 334
BstMBI GATC 1 cut(s) 331
BstSFI CTRYAG 1 cut(s) 91
BstSLI GKGCMC 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 212
BsuRI GGCC 1 cut(s) 290
BtgI CCRYGG 1 cut(s) 285
BtgZI GCGATG 1 cut(s) 112
CseI GACGC 1 cut(s) 217
CviAII CATG 3 cut(s) 128, 286, 398
CviJI RGCY 3 cut(s) 132, 240, 290
CviKI_1 RGCY 3 cut(s) 132, 240, 290
DdeI CTNAG 2 cut(s) 136, 241
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
Eam1104I CTCTTC 2 cut(s) 98, 399
EarI CTCTTC 2 cut(s) 98, 399
Eco130I CCWWGG 1 cut(s) 285
Eco57I CTGAAG 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 285
ErhI CCWWGG 1 cut(s) 285
FaeI CATG 3 cut(s) 131, 289, 401
FaqI GGGAC 2 cut(s) 268, 380
FatI CATG 3 cut(s) 127, 285, 397
FauNDI CATATG 1 cut(s) 41
HaeIII GGCC 1 cut(s) 290
HapII CCGG 1 cut(s) 379
HgaI GACGC 1 cut(s) 217
Hin1II CATG 3 cut(s) 131, 289, 401
HinfI GANTC 1 cut(s) 391
HpaII CCGG 1 cut(s) 379
Hpy188I TCNGA 2 cut(s) 183, 190
Hpy188III TCNNGA 1 cut(s) 243
HpyCH4III ACNGT 1 cut(s) 259
HpyCH4V TGCA 2 cut(s) 175, 323
HpyF3I CTNAG 2 cut(s) 136, 241
Hsp92II CATG 3 cut(s) 131, 289, 401
Kzo9I GATC 1 cut(s) 331
LmnI GCTCC 1 cut(s) 418
LpnPI CCDG 6 cut(s) 8, 123, 145, 180, 228, 392
MaeIII GTNAC 1 cut(s) 388
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 4 cut(s) 79, 115, 217, 386
MhlI GDGCHC 1 cut(s) 166
MlyI GAGTC 1 cut(s) 385
MnlI CCTC 4 cut(s) 95, 239, 308, 329
MseI TTAA 2 cut(s) 200, 218
MspI CCGG 1 cut(s) 379
NcoI CCATGG 1 cut(s) 285
NdeI CATATG 1 cut(s) 41
NdeII GATC 1 cut(s) 331
NlaIII CATG 3 cut(s) 131, 289, 401
NlaIV GGNNCC 1 cut(s) 165
NmuCI GTSAC 1 cut(s) 388
NspV TTCGAA 1 cut(s) 123
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
PsiI TTATAA 3 cut(s) 74, 264, 423
PspN4I GGNNCC 1 cut(s) 165
SaqAI TTAA 2 cut(s) 200, 218
Sau3AI GATC 1 cut(s) 331
SchI GAGTC 1 cut(s) 385
SduI GDGCHC 1 cut(s) 166
SetI ASST 2 cut(s) 142, 429
SfcI CTRYAG 1 cut(s) 91
SfuI TTCGAA 1 cut(s) 123
StyI CCWWGG 1 cut(s) 285
TaaI ACNGT 1 cut(s) 259
TaqI TCGA 3 cut(s) 65, 123, 334
Tru1I TTAA 2 cut(s) 200, 218
Tru9I TTAA 2 cut(s) 200, 218
TseFI GTSAC 1 cut(s) 388
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 2 cut(s) 294, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.