Rmu_sc0000638.1_g000038

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000638.1
OG0013875
Physical Location & Seq
Reverse (-)
123785 .. 124740
956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000638.1_g000038.1.cds

Sequence Viewer

Length: 579 bp
atgaccaacaagcgtttagattggccgtccagatacaaaatagcactaggtgctgcaagaggaatatcataccttcatcatgattgcatccctcacataatccatagagatatcaagtcaagcaatatattgttggatcaaaacatggaggctcgagtgtctgatttcgggctggcaactttgatggaaccggataagactcatgtttcaacactcgtagctggaacttttggttacttagctcctgaatactttgataccggaagagcaacagcaaaaggggatgtttacagttttggagtggttttactagagcttctaactggtaaaaagcctacagatgaagcatttgttgaggaaggaacaaagcttgtgacgtgggtgaagggagttgttcaggacaagagggaggagtatgtacttgacagtagcttagggtgttgtccaggagatgagattaacaatgcctttagcattgcactaatgtgccttgaaccagaggcttccaagcggcctaccatggctgaggttgtcaagatgcttgagcagataagaagtgacaaagttatagatacttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

192

Amino Acids

21.34

Weight (kDa)

5.39

Isoelectric Point (pI)

33.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013875)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78530 AT1G78530
fragaria_vesca FvH4_3g17360
malus_domestica MD11G1273500.v1.1
prunus_persica Prupe.4G153600_v2.0.a1
pyrus_communis pycom11g24120
rosa_chinensis RchiOBHm_Chr5g0028881
rosa_laevigata RLG00000033122
rosa_multiflora Rmu_co8260251.1_g000001 Rmu_sc0000638.1_g000038
rosa_roxburghii Rroxscaffold_1G00051000
rosa_rugosa Rorug05G0111200
rosa_samantha Rh5AG203500 Rh5BG201600 Rh5CG222600 Rh5DG205200
rosa_wichuraiana Rw5G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 511
AclWI GGATC 1 cut(s) 144
AcoI YGGCCR 1 cut(s) 23
AdeI CACNNNGTG 1 cut(s) 50
AfaI GTAC 1 cut(s) 420
AgsI TTSAA 2 cut(s) 210, 494
AjiI CACGTC 1 cut(s) 378
AjnI CCWGG 1 cut(s) 445
AleI CACNNNNGTG 1 cut(s) 484
AluBI AGCT 5 cut(s) 221, 242, 316, 370, 432
AluI AGCT 5 cut(s) 221, 242, 316, 370, 432
AlwI GGATC 1 cut(s) 144
Ama87I CYCGRG 1 cut(s) 153
AoxI GGCC 2 cut(s) 23, 512
ApeKI GCWGC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 394
AvaI CYCGRG 1 cut(s) 153
BbvCI CCTCAGC 1 cut(s) 525
BbvI GCAGC 1 cut(s) 40
BccI CCATC 1 cut(s) 178
BceAI ACGGC 1 cut(s) 10
BciT130I CCWGG 1 cut(s) 447
BfaI CTAG 2 cut(s) 47, 311
BfmI CTRYAG 1 cut(s) 336
BisI GCNGC 2 cut(s) 54, 512
BlsI GCNGC 2 cut(s) 55, 513
Bme1390I CCNGG 1 cut(s) 447
BmeT110I CYCGRG 1 cut(s) 153
BmgBI CACGTC 1 cut(s) 378
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 1 cut(s) 447
BmsI GCATC 2 cut(s) 96, 528
Bpu10I CCTNAGC 2 cut(s) 433, 525
BpuEI CTTGAG 1 cut(s) 563
BsaJI CCNNGG 1 cut(s) 519
BsaWI WCCGGW 2 cut(s) 190, 260
Bse1I ACTGG 1 cut(s) 328
Bse3DI GCAATG 1 cut(s) 474
BseBI CCWGG 1 cut(s) 447
BseDI CCNNGG 1 cut(s) 519
BseGI GGATG 2 cut(s) 87, 289
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 1 cut(s) 516
BseNI ACTGG 1 cut(s) 328
BseRI GAGGAG 1 cut(s) 425
BseXI GCAGC 1 cut(s) 40
BshFI GGCC 2 cut(s) 25, 514
BsiHKCI CYCGRG 1 cut(s) 153
BsiSI CCGG 2 cut(s) 191, 261
BsnI GGCC 2 cut(s) 25, 514
BsoBI CYCGRG 1 cut(s) 153
Bsp143I GATC 1 cut(s) 136
Bsp19I CCATGG 1 cut(s) 519
BspACI CCGC 1 cut(s) 511
BspANI GGCC 2 cut(s) 25, 514
BspCNI CTCAG 1 cut(s) 517
BspHI TCATGA 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 189
BspPI GGATC 1 cut(s) 144
BspQI GCTCTTC 1 cut(s) 259
BsrDI GCAATG 1 cut(s) 474
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 1 cut(s) 519
BssMI GATC 1 cut(s) 136
BssT1I CCWWGG 1 cut(s) 519
Bst2UI CCWGG 1 cut(s) 447
Bst4CI ACNGT 2 cut(s) 293, 428
Bst6I CTCTTC 1 cut(s) 259
BstAPI GCANNNNNTGC 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 3 cut(s) 238, 433, 525
BstDSI CCRYGG 1 cut(s) 519
BstF5I GGATG 2 cut(s) 87, 289
BstKTI GATC 1 cut(s) 139
BstMBI GATC 1 cut(s) 136
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 1 cut(s) 447
BstSCI CCNGG 1 cut(s) 445
BstSFI CTRYAG 1 cut(s) 336
BstV1I GCAGC 1 cut(s) 40
BsuRI GGCC 2 cut(s) 25, 514
BtgI CCRYGG 1 cut(s) 519
BtrI CACGTC 1 cut(s) 378
BtsCI GGATG 2 cut(s) 87, 289
Cac8I GCNNGC 1 cut(s) 174
CciI TCATGA 1 cut(s) 79
Csp6I GTAC 1 cut(s) 419
CviAII CATG 4 cut(s) 80, 145, 203, 520
CviQI GTAC 1 cut(s) 419
DdeI CTNAG 3 cut(s) 238, 433, 525
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
DraIII CACNNNGTG 1 cut(s) 50
EaeI YGGCCR 1 cut(s) 23
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
Eco130I CCWWGG 1 cut(s) 519
Eco32I GATATC 1 cut(s) 112
Eco88I CYCGRG 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 445
EcoRV GATATC 1 cut(s) 112
EcoT14I CCWWGG 1 cut(s) 519
ErhI CCWWGG 1 cut(s) 519
FaeI CATG 4 cut(s) 83, 148, 206, 523
FatI CATG 4 cut(s) 79, 144, 202, 519
Fnu4HI GCNGC 2 cut(s) 54, 512
FokI GGATG 2 cut(s) 74, 296
Fsp4HI GCNGC 2 cut(s) 54, 512
FspBI CTAG 2 cut(s) 47, 311
GluI GCNGC 2 cut(s) 54, 512
HaeIII GGCC 2 cut(s) 25, 514
HapII CCGG 2 cut(s) 191, 261
Hin1II CATG 4 cut(s) 83, 148, 206, 523
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 1 cut(s) 199
HpaII CCGG 2 cut(s) 191, 261
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 1 cut(s) 289
Hpy188I TCNGA 1 cut(s) 163
Hpy188III TCNNGA 5 cut(s) 30, 80, 245, 398, 535
Hpy8I GTNNAC 1 cut(s) 289
HpyAV CCTTC 3 cut(s) 83, 353, 379
HpyCH4III ACNGT 2 cut(s) 293, 428
HpyCH4IV ACGT 1 cut(s) 377
HpyCH4V TGCA 3 cut(s) 56, 87, 479
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 3 cut(s) 238, 433, 525
HpySE526I ACGT 1 cut(s) 377
Hsp92II CATG 4 cut(s) 83, 148, 206, 523
Kzo9I GATC 1 cut(s) 136
LguI GCTCTTC 1 cut(s) 259
LmnI GCTCC 1 cut(s) 247
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 2 cut(s) 96, 528
MaeI CTAG 2 cut(s) 47, 311
MaeII ACGT 1 cut(s) 377
MaeIII GTNAC 3 cut(s) 233, 373, 557
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 1 cut(s) 276
MlyI GAGTC 1 cut(s) 193
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 8 cut(s) 53, 102, 142, 349, 399, 403, 493, 520
MseI TTAA 1 cut(s) 459
MslI CAYNNNNRTG 1 cut(s) 484
MspI CCGG 2 cut(s) 191, 261
MspR9I CCNGG 1 cut(s) 447
MvaI CCWGG 1 cut(s) 447
MwoI GCNNNNNNNGC 1 cut(s) 50
NcoI CCATGG 1 cut(s) 519
NdeII GATC 1 cut(s) 136
NlaIII CATG 4 cut(s) 83, 148, 206, 523
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 2 cut(s) 373, 557
OliI CACNNNNGTG 1 cut(s) 484
PaeR7I CTCGAG 1 cut(s) 153
PagI TCATGA 1 cut(s) 79
PciSI GCTCTTC 1 cut(s) 259
PfoI TCCNGGA 1 cut(s) 445
PkrI GCNGC 2 cut(s) 55, 513
PleI GAGTC 1 cut(s) 193
PpsI GAGTC 1 cut(s) 193
Psp6I CCWGG 1 cut(s) 445
PspGI CCWGG 1 cut(s) 445
PspN4I GGNNCC 1 cut(s) 189
PspXI VCTCGAGB 1 cut(s) 153
RsaI GTAC 1 cut(s) 420
RsaNI GTAC 1 cut(s) 419
RseI CAYNNNNRTG 1 cut(s) 484
SapI GCTCTTC 1 cut(s) 259
SaqAI TTAA 1 cut(s) 459
SatI GCNGC 2 cut(s) 54, 512
Sau3AI GATC 1 cut(s) 136
SchI GAGTC 1 cut(s) 193
ScrFI CCNGG 1 cut(s) 447
SetI ASST 9 cut(s) 52, 75, 223, 244, 318, 372, 380, 434, 531
SfaNI GCATC 2 cut(s) 96, 528
SfcI CTRYAG 1 cut(s) 336
Sfr274I CTCGAG 1 cut(s) 153
SlaI CTCGAG 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 484
SmlI CTYRAG 2 cut(s) 153, 542
SmoI CTYRAG 2 cut(s) 153, 542
SsiI CCGC 1 cut(s) 511
SspMI CTAG 2 cut(s) 47, 311
StyD4I CCNGG 1 cut(s) 445
StyI CCWWGG 1 cut(s) 519
TaaI ACNGT 2 cut(s) 293, 428
TaiI ACGT 1 cut(s) 380
TaqI TCGA 1 cut(s) 154
TatI WGTACW 1 cut(s) 418
TauI GCSGC 1 cut(s) 514
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TseFI GTSAC 2 cut(s) 373, 557
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 2 cut(s) 373, 557
TspDTI ATGAA 2 cut(s) 65, 357
XhoI CTCGAG 1 cut(s) 153
XspI CTAG 2 cut(s) 47, 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.