Rh5AG203500

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
23940791 .. 23942572
1782 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG203500.1

Sequence Viewer

Length: 642 bp
ATGGGGAAAAATGCTTTGGTTCTGGCATTTTACATAACCATATGCTGTATTGCTTTTGTAATATCGAAGATTATAATCGCAGTCCTCATCTATAGGCGATGGAAGAGAAAGCACTTGGTTTTCGAACATGGCTTCTCAGGTGGGAAAATGGTTTTGTTCAGGGCACCAGTAATGCAATCTCTGAAATCAGATGTGTTCTTAAAGAAGACGCTGAAGTTAAGCAACAAGGACATCATTGGCTCAGGAGGGTATGGGACAGTTTATAAACTTACAATAAATGAAACCATGGCCTTTGCTGTGAAAAGACTGAACAGAGGAAGTGCAGATAGAGATCGAGGATTTGAGAGAGAACTTGAAGCAATGGGGGACATAAAGCACCGGAACATTGTGACTCTTCATGGATATTATACTGCTCCACATTATAACCTTCTCATTTACGAACTGGTGAAGGGAGTTGTTCAGGACAAGAGGGAGGAGTATGTACTTGACAGTAGCTTAGGGTGTTGTCCAGGAGATGAGATTAACAATGCCTTTAGCATTGCACTAATGTGCCTTGAACCAGAGGCTTCCAAGCGGCCTACCATGGCTGAGGTTGTCAAGATGCTTGAGCAGATAAGAAGTGACAAAGTTATAGATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

213

Amino Acids

24.1

Weight (kDa)

9.22

Isoelectric Point (pI)

37.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 75 - 152 3.6e-11 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 76 - 151 8.4e-10 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013875)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78530 AT1G78530
fragaria_vesca FvH4_3g17360
malus_domestica MD11G1273500.v1.1
prunus_persica Prupe.4G153600_v2.0.a1
pyrus_communis pycom11g24120
rosa_chinensis RchiOBHm_Chr5g0028881
rosa_laevigata RLG00000033122
rosa_multiflora Rmu_co8260251.1_g000001 Rmu_sc0000638.1_g000038
rosa_roxburghii Rroxscaffold_1G00051000
rosa_rugosa Rorug05G0111200
rosa_samantha Rh5AG203500 Rh5BG201600 Rh5CG222600 Rh5DG205200
rosa_wichuraiana Rw5G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 74, 264, 423
AccB1I GGYRCC 1 cut(s) 163
AciI CCGC 1 cut(s) 574
AcuI CTGAAG 1 cut(s) 233
AfaI GTAC 1 cut(s) 483
AgsI TTSAA 2 cut(s) 356, 557
AjnI CCWGG 1 cut(s) 508
AjuI GAANNNNNNNTTGG 1 cut(s) 31
AleI CACNNNNGTG 1 cut(s) 547
AluBI AGCT 1 cut(s) 495
AluI AGCT 1 cut(s) 495
AoxI GGCC 2 cut(s) 288, 575
AsuHPI GGTGA 1 cut(s) 457
AsuII TTCGAA 1 cut(s) 123
BaeGI GKGCMC 1 cut(s) 166
BanI GGYRCC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 212
BbvCI CCTCAGC 1 cut(s) 588
BccI CCATC 1 cut(s) 93
BciT130I CCWGG 1 cut(s) 510
BfmI CTRYAG 1 cut(s) 91
BisI GCNGC 1 cut(s) 575
BlsI GCNGC 1 cut(s) 576
Bme1390I CCNGG 1 cut(s) 510
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 1 cut(s) 510
BmsI GCATC 1 cut(s) 591
BpiI GAAGAC 1 cut(s) 212
Bpu10I CCTNAGC 3 cut(s) 241, 496, 588
Bpu14I TTCGAA 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 626
BsaBI GATNNNNATC 2 cut(s) 74, 330
BsaJI CCNNGG 2 cut(s) 285, 582
BsaWI WCCGGW 1 cut(s) 378
Bse1I ACTGG 2 cut(s) 167, 447
Bse3DI GCAATG 2 cut(s) 366, 537
Bse8I GATNNNNATC 2 cut(s) 74, 330
BseBI CCWGG 1 cut(s) 510
BseDI CCNNGG 2 cut(s) 285, 582
BseJI GATNNNNATC 2 cut(s) 74, 330
BseMI GCAATG 2 cut(s) 366, 537
BseMII CTCAG 3 cut(s) 150, 255, 579
BseNI ACTGG 2 cut(s) 167, 447
BseRI GAGGAG 1 cut(s) 488
BseSI GKGCMC 1 cut(s) 166
BsgI GTGCAG 1 cut(s) 342
BshFI GGCC 2 cut(s) 290, 577
BshNI GGYRCC 1 cut(s) 163
BsiSI CCGG 1 cut(s) 379
BslFI GGGAC 2 cut(s) 268, 380
BsmFI GGGAC 2 cut(s) 268, 380
BsnI GGCC 2 cut(s) 290, 577
Bsp119I TTCGAA 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 1 cut(s) 331
Bsp19I CCATGG 2 cut(s) 285, 582
BspACI CCGC 1 cut(s) 574
BspANI GGCC 2 cut(s) 290, 577
BspCNI CTCAG 3 cut(s) 149, 254, 580
BspLI GGNNCC 1 cut(s) 165
BspT104I TTCGAA 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 163
BsrDI GCAATG 2 cut(s) 366, 537
BsrI ACTGG 2 cut(s) 167, 447
BssECI CCNNGG 2 cut(s) 285, 582
BssMI GATC 1 cut(s) 331
BssT1I CCWWGG 2 cut(s) 285, 582
Bst2UI CCWGG 1 cut(s) 510
Bst4CI ACNGT 2 cut(s) 259, 491
Bst6I CTCTTC 2 cut(s) 98, 399
BstBI TTCGAA 1 cut(s) 123
BstDEI CTNAG 4 cut(s) 136, 241, 496, 588
BstDSI CCRYGG 2 cut(s) 285, 582
BstKTI GATC 1 cut(s) 334
BstMBI GATC 1 cut(s) 331
BstNI CCWGG 1 cut(s) 510
BstSCI CCNGG 1 cut(s) 508
BstSFI CTRYAG 1 cut(s) 91
BstSLI GKGCMC 1 cut(s) 166
BstV2I GAAGAC 1 cut(s) 212
BsuRI GGCC 2 cut(s) 290, 577
BtgI CCRYGG 2 cut(s) 285, 582
BtgZI GCGATG 1 cut(s) 112
CseI GACGC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 482
CviAII CATG 4 cut(s) 128, 286, 398, 583
CviJI RGCY 7 cut(s) 132, 240, 290, 495, 566, 577, 587
CviKI_1 RGCY 7 cut(s) 132, 240, 290, 495, 566, 577, 587
CviQI GTAC 1 cut(s) 482
DdeI CTNAG 4 cut(s) 136, 241, 496, 588
DpnI GATC 1 cut(s) 333
DpnII GATC 1 cut(s) 331
Eam1104I CTCTTC 2 cut(s) 98, 399
EarI CTCTTC 2 cut(s) 98, 399
Eco130I CCWWGG 2 cut(s) 285, 582
Eco57I CTGAAG 1 cut(s) 233
EcoRII CCWGG 1 cut(s) 508
EcoT14I CCWWGG 2 cut(s) 285, 582
ErhI CCWWGG 2 cut(s) 285, 582
FaeI CATG 4 cut(s) 131, 289, 401, 586
FaqI GGGAC 2 cut(s) 268, 380
FatI CATG 4 cut(s) 127, 285, 397, 582
FauNDI CATATG 1 cut(s) 41
Fnu4HI GCNGC 1 cut(s) 575
Fsp4HI GCNGC 1 cut(s) 575
GluI GCNGC 1 cut(s) 575
HaeIII GGCC 2 cut(s) 290, 577
HapII CCGG 1 cut(s) 379
HgaI GACGC 1 cut(s) 217
Hin1II CATG 4 cut(s) 131, 289, 401, 586
HinfI GANTC 1 cut(s) 391
HpaII CCGG 1 cut(s) 379
HphI GGTGA 1 cut(s) 457
Hpy188I TCNGA 2 cut(s) 183, 190
Hpy188III TCNNGA 3 cut(s) 243, 461, 598
HpyAV CCTTC 2 cut(s) 437, 442
HpyCH4III ACNGT 2 cut(s) 259, 491
HpyCH4V TGCA 3 cut(s) 175, 323, 542
HpyF3I CTNAG 4 cut(s) 136, 241, 496, 588
Hsp92II CATG 4 cut(s) 131, 289, 401, 586
Kzo9I GATC 1 cut(s) 331
LmnI GCTCC 1 cut(s) 418
LweI GCATC 1 cut(s) 591
MaeIII GTNAC 2 cut(s) 388, 620
MalI GATC 1 cut(s) 333
MboI GATC 1 cut(s) 331
MboII GAAGA 4 cut(s) 79, 115, 217, 386
MhlI GDGCHC 1 cut(s) 166
MlyI GAGTC 1 cut(s) 385
MnlI CCTC 8 cut(s) 95, 239, 308, 329, 462, 466, 556, 583
MseI TTAA 3 cut(s) 200, 218, 522
MslI CAYNNNNRTG 1 cut(s) 547
MspI CCGG 1 cut(s) 379
MspR9I CCNGG 1 cut(s) 510
MvaI CCWGG 1 cut(s) 510
NcoI CCATGG 2 cut(s) 285, 582
NdeI CATATG 1 cut(s) 41
NdeII GATC 1 cut(s) 331
NlaIII CATG 4 cut(s) 131, 289, 401, 586
NlaIV GGNNCC 1 cut(s) 165
NmuCI GTSAC 2 cut(s) 388, 620
NspV TTCGAA 1 cut(s) 123
OliI CACNNNNGTG 1 cut(s) 547
PfoI TCCNGGA 1 cut(s) 508
PkrI GCNGC 1 cut(s) 576
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
PsiI TTATAA 3 cut(s) 74, 264, 423
Psp6I CCWGG 1 cut(s) 508
PspGI CCWGG 1 cut(s) 508
PspN4I GGNNCC 1 cut(s) 165
RsaI GTAC 1 cut(s) 483
RsaNI GTAC 1 cut(s) 482
RseI CAYNNNNRTG 1 cut(s) 547
SaqAI TTAA 3 cut(s) 200, 218, 522
SatI GCNGC 1 cut(s) 575
Sau3AI GATC 1 cut(s) 331
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 1 cut(s) 510
SduI GDGCHC 1 cut(s) 166
SetI ASST 4 cut(s) 142, 429, 497, 594
SfaNI GCATC 1 cut(s) 591
SfcI CTRYAG 1 cut(s) 91
SfuI TTCGAA 1 cut(s) 123
SmiMI CAYNNNNRTG 1 cut(s) 547
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
SsiI CCGC 1 cut(s) 574
StyD4I CCNGG 1 cut(s) 508
StyI CCWWGG 2 cut(s) 285, 582
TaaI ACNGT 2 cut(s) 259, 491
TaqI TCGA 3 cut(s) 65, 123, 334
TatI WGTACW 1 cut(s) 481
TauI GCSGC 1 cut(s) 577
Tru1I TTAA 3 cut(s) 200, 218, 522
Tru9I TTAA 3 cut(s) 200, 218, 522
TseFI GTSAC 2 cut(s) 388, 620
Tsp45I GTSAC 2 cut(s) 388, 620
TspDTI ATGAA 2 cut(s) 294, 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.