MD11G1273500.v1.1

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0013875
Physical Location & Seq
Forward (+)
39015215 .. 39017772
2558 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1273500.v1.1.491

Sequence Viewer

Length: 1050 bp
ATGGGAAAGGCTTTGGTTTTAGCGTTCTACATAACCATATGCTGTGTTGCTTTTATTATATCAAAGATTGTTATTTCAGTCCTCATCTATAAGCGCTGGAAGAAGAAGCACTTGGTCCATGAAGATGGCTTCTCTGGTGGGAGAATGGTTTTGTTCAGGGCACCAACAATGAAACCTCTGAAAACGGATGTGTTCTTGAAGAAGACACTGAAGTTGAGCAACAAGGACATCATTGGTTCCGGAGGCTACGGGACGGTTTATAAGCTGACAGTAAATGACTCCACAGCCTTTGCTGTGAAAAGATTGAGCAGAGGAAGTCCAGAGAGAGATCGAGGCTTCGAGAGAGAGCTCGAAGCAATGGGGGACATAAAACACCGCAACATCGTCACCCTTCATGGATATTACACTGCTCCAAACTATAATCTTCTCATATATGAACTGGTGCCTAATGGAAGTTTGGATGCAGTCCTGCATGGAAGATCAACGGACAAGATGCTTTTGGATTGGCCTACCAGATACAAAATAGCACTAGGTGCAGCAAGAGGAATATCGTACCTTCATCACGATTGCATCCCTCACATAATCCACAGAGATATCAAATCAAGCAACATCTTGTTGGATCAAAACATGGAGGCTCGAGTGTCTGATTTCGGATTGGCCACCTTGATGGAACCGGATAAGACTCATGTTTCGACACTTGTAGCTGGAACTTTCGGATACTTAGCTCCTGAATATTTTGATACGGGAAGAGCAACAGTGAAAGGCGATGTTTACAGTTTTGGAGTGGTTTTACTAGAGCTTCTAACCGGAAAGAAACCTACGGATGAAGCATTCATTGAGGAGGGAACAAAGCTTGTGACATGGGTGAAGGCAGTTGTTCAAGACAGAAGGGAGGAGTATGTACTTGACAGTAACTTAGGCTGCTGTTCGATCGATGAGATTAACACTGTTTTTAGTATTGCATTAATCTGCCTCGAACCGGAGCCTTCAAAGAGGCCTACCATGGATGAGGTTGTCAAGATGCTTGAGCAGATCAAAAATAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

350

Amino Acids

39.19

Weight (kDa)

8.82

Isoelectric Point (pI)

30.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 74 - 340 5.8e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 75 - 342 9e-45 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013875)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78530 AT1G78530
fragaria_vesca FvH4_3g17360
malus_domestica MD11G1273500.v1.1
prunus_persica Prupe.4G153600_v2.0.a1
pyrus_communis pycom11g24120
rosa_chinensis RchiOBHm_Chr5g0028881
rosa_laevigata RLG00000033122
rosa_multiflora Rmu_co8260251.1_g000001 Rmu_sc0000638.1_g000038
rosa_roxburghii Rroxscaffold_1G00051000
rosa_rugosa Rorug05G0111200
rosa_samantha Rh5AG203500 Rh5BG201600 Rh5CG222600 Rh5DG205200
rosa_wichuraiana Rw5G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 261
AccB1I GGYRCC 2 cut(s) 160, 442
AccIII TCCGGA 1 cut(s) 239
AciI CCGC 1 cut(s) 376
AclWI GGATC 1 cut(s) 627
AcoI YGGCCR 1 cut(s) 657
AcuI CTGAAG 1 cut(s) 230
AdeI CACNNNGTG 1 cut(s) 533
AfaI GTAC 2 cut(s) 554, 903
AfeI AGCGCT 1 cut(s) 95
AfiI CCNNNNNNNGG 1 cut(s) 979
AgsI TTSAA 3 cut(s) 199, 881, 990
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 6 cut(s) 265, 349, 704, 725, 799, 853
AluI AGCT 6 cut(s) 265, 349, 704, 725, 799, 853
Alw21I GWGCWC 1 cut(s) 351
AlwI GGATC 1 cut(s) 627
Ama87I CYCGRG 1 cut(s) 636
Aor13HI TCCGGA 1 cut(s) 239
Aor51HI AGCGCT 1 cut(s) 95
AoxI GGCC 3 cut(s) 506, 657, 995
ApeKI GCWGC 2 cut(s) 536, 921
ArsI GACNNNNNNTTYG 2 cut(s) 673, 705
AseI ATTAAT 1 cut(s) 965
AspLEI GCGC 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 115
AsuHPI GGTGA 2 cut(s) 379, 877
AvaI CYCGRG 1 cut(s) 636
AvaII GGWCC 1 cut(s) 115
BaeGI GKGCMC 1 cut(s) 163
BalI TGGCCA 1 cut(s) 659
BanI GGYRCC 2 cut(s) 160, 442
BanII GRGCYC 1 cut(s) 351
BbsI GAAGAC 1 cut(s) 209
Bbv12I GWGCWC 1 cut(s) 351
BbvI GCAGC 2 cut(s) 548, 908
BccI CCATC 2 cut(s) 119, 661
BciVI GTATCC 1 cut(s) 710
BfaI CTAG 2 cut(s) 530, 794
BfoI RGCGCY 1 cut(s) 97
BfuI GTATCC 1 cut(s) 710
BisI GCNGC 2 cut(s) 537, 922
BlsI GCNGC 2 cut(s) 538, 923
Bme18I GGWCC 1 cut(s) 115
BmeT110I CYCGRG 1 cut(s) 636
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 5 cut(s) 162, 238, 444, 672, 984
BmsI GCATC 4 cut(s) 451, 483, 579, 1011
BpiI GAAGAC 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 1046
Bsa29I ATCGAT 1 cut(s) 933
BsaJI CCNNGG 1 cut(s) 1002
BsaWI WCCGGW 4 cut(s) 239, 673, 806, 979
Bsc4I CCNNNNNNNGG 1 cut(s) 979
Bse1I ACTGG 1 cut(s) 444
Bse3DI GCAATG 1 cut(s) 363
BseAI TCCGGA 1 cut(s) 239
BseCI ATCGAT 1 cut(s) 933
BseDI CCNNGG 1 cut(s) 1002
BseGI GGATG 5 cut(s) 193, 466, 570, 829, 1012
BseLI CCNNNNNNNGG 1 cut(s) 979
BseMI GCAATG 1 cut(s) 363
BseNI ACTGG 1 cut(s) 444
BseRI GAGGAG 2 cut(s) 854, 908
BseSI GKGCMC 1 cut(s) 163
BseXI GCAGC 2 cut(s) 548, 908
BsgI GTGCAG 1 cut(s) 555
Bsh1285I CGRYCG 1 cut(s) 933
BshFI GGCC 3 cut(s) 508, 659, 997
BshNI GGYRCC 2 cut(s) 160, 442
BshVI ATCGAT 1 cut(s) 933
BsiEI CGRYCG 1 cut(s) 933
BsiHKAI GWGCWC 1 cut(s) 351
BsiHKCI CYCGRG 1 cut(s) 636
BsiSI CCGG 4 cut(s) 240, 674, 807, 980
BslFI GGGAC 2 cut(s) 265, 377
BslI CCNNNNNNNGG 1 cut(s) 979
BsmFI GGGAC 2 cut(s) 265, 377
BsmI GAATGC 1 cut(s) 830
BsnI GGCC 3 cut(s) 508, 659, 997
BsoBI CYCGRG 1 cut(s) 636
Bsp1286I GDGCHC 2 cut(s) 163, 351
Bsp13I TCCGGA 1 cut(s) 239
Bsp143I GATC 5 cut(s) 328, 479, 619, 930, 1032
Bsp19I CCATGG 1 cut(s) 1002
BspACI CCGC 1 cut(s) 376
BspANI GGCC 3 cut(s) 508, 659, 997
BspDI ATCGAT 1 cut(s) 933
BspEI TCCGGA 1 cut(s) 239
BspLI GGNNCC 5 cut(s) 162, 238, 444, 672, 984
BspPI GGATC 1 cut(s) 627
BspQI GCTCTTC 1 cut(s) 742
BspT107I GGYRCC 2 cut(s) 160, 442
BsrDI GCAATG 1 cut(s) 363
BsrI ACTGG 1 cut(s) 444
BssECI CCNNGG 1 cut(s) 1002
BssMI GATC 5 cut(s) 328, 479, 619, 930, 1032
BssT1I CCWWGG 1 cut(s) 1002
Bst4CI ACNGT 6 cut(s) 256, 271, 757, 776, 911, 949
Bst6I CTCTTC 1 cut(s) 742
BstAPI GCANNNNNTGC 1 cut(s) 533
BstDEI CTNAG 2 cut(s) 721, 916
BstDSI CCRYGG 1 cut(s) 1002
BstF5I GGATG 5 cut(s) 193, 466, 570, 829, 1012
BstH2I RGCGCY 1 cut(s) 97
BstHHI GCGC 1 cut(s) 96
BstKTI GATC 5 cut(s) 331, 482, 622, 933, 1035
BstMBI GATC 5 cut(s) 328, 479, 619, 930, 1032
BstMCI CGRYCG 1 cut(s) 933
BstMWI GCNNNNNNNGC 1 cut(s) 533
BstSLI GKGCMC 1 cut(s) 163
BstV1I GCAGC 2 cut(s) 548, 908
BstV2I GAAGAC 1 cut(s) 209
BstXI CCANNNNNNTGG 2 cut(s) 125, 667
Bsu15I ATCGAT 1 cut(s) 933
BsuI GTATCC 1 cut(s) 710
BsuRI GGCC 3 cut(s) 508, 659, 997
BsuTUI ATCGAT 1 cut(s) 933
BtgI CCRYGG 1 cut(s) 1002
BtgZI GCGATG 1 cut(s) 780
BtsCI GGATG 5 cut(s) 193, 466, 570, 829, 1012
BtsI GCAGTG 1 cut(s) 405
BtsIMutI CAGTG 4 cut(s) 206, 405, 762, 945
CfoI GCGC 1 cut(s) 96
Cfr13I GGNCC 1 cut(s) 115
ClaI ATCGAT 1 cut(s) 933
Csp6I GTAC 2 cut(s) 553, 902
CspCI CAANNNNNGTGG 2 cut(s) 271, 306
CviAII CATG 7 cut(s) 119, 395, 473, 628, 686, 861, 1003
CviQI GTAC 2 cut(s) 553, 902
DdeI CTNAG 2 cut(s) 721, 916
DpnI GATC 5 cut(s) 330, 481, 621, 932, 1034
DpnII GATC 5 cut(s) 328, 479, 619, 930, 1032
DraIII CACNNNGTG 1 cut(s) 533
EaeI YGGCCR 1 cut(s) 657
Eam1104I CTCTTC 1 cut(s) 742
EarI CTCTTC 1 cut(s) 742
Ecl136II GAGCTC 1 cut(s) 349
Eco130I CCWWGG 1 cut(s) 1002
Eco147I AGGCCT 1 cut(s) 997
Eco24I GRGCYC 1 cut(s) 351
Eco32I GATATC 1 cut(s) 595
Eco47I GGWCC 1 cut(s) 115
Eco47III AGCGCT 1 cut(s) 95
Eco53kI GAGCTC 1 cut(s) 349
Eco57I CTGAAG 1 cut(s) 230
Eco88I CYCGRG 1 cut(s) 636
EcoICRI GAGCTC 1 cut(s) 349
EcoRV GATATC 1 cut(s) 595
EcoT14I CCWWGG 1 cut(s) 1002
EcoT38I GRGCYC 1 cut(s) 351
ErhI CCWWGG 1 cut(s) 1002
FaeI CATG 7 cut(s) 122, 398, 476, 631, 689, 864, 1006
FalI AAGNNNNNCTT 2 cut(s) 95, 127
FaqI GGGAC 2 cut(s) 265, 377
FatI CATG 7 cut(s) 118, 394, 472, 627, 685, 860, 1002
FauNDI CATATG 1 cut(s) 38
Fnu4HI GCNGC 2 cut(s) 537, 922
FokI GGATG 5 cut(s) 200, 473, 557, 836, 1019
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 2 cut(s) 537, 922
FspBI CTAG 2 cut(s) 530, 794
GlaI GCGC 1 cut(s) 95
GluI GCNGC 2 cut(s) 537, 922
HaeII RGCGCY 1 cut(s) 97
HaeIII GGCC 3 cut(s) 508, 659, 997
HapII CCGG 4 cut(s) 240, 674, 807, 980
HhaI GCGC 1 cut(s) 96
Hin1II CATG 7 cut(s) 122, 398, 476, 631, 689, 864, 1006
Hin6I GCGC 1 cut(s) 94
HinP1I GCGC 1 cut(s) 94
HindIII AAGCTT 1 cut(s) 851
HinfI GANTC 2 cut(s) 278, 682
HpaII CCGG 4 cut(s) 240, 674, 807, 980
HphI GGTGA 2 cut(s) 379, 877
Hpy166II GTNNAC 1 cut(s) 772
Hpy188I TCNGA 4 cut(s) 180, 646, 653, 716
Hpy188III TCNNGA 8 cut(s) 196, 240, 320, 340, 563, 728, 881, 1018
Hpy8I GTNNAC 1 cut(s) 772
HpyAV CCTTC 5 cut(s) 401, 566, 862, 882, 996
HpyCH4III ACNGT 6 cut(s) 256, 271, 757, 776, 911, 949
HpyCH4V TGCA 5 cut(s) 464, 472, 536, 570, 962
HpyF10VI GCNNNNNNNGC 1 cut(s) 533
HpyF3I CTNAG 2 cut(s) 721, 916
Hsp92II CATG 7 cut(s) 122, 398, 476, 631, 689, 864, 1006
HspAI GCGC 1 cut(s) 94
Kpn2I TCCGGA 1 cut(s) 239
Kzo9I GATC 5 cut(s) 328, 479, 619, 930, 1032
LguI GCTCTTC 1 cut(s) 742
LmnI GCTCC 3 cut(s) 415, 730, 982
Lsp1109I GCAGC 2 cut(s) 548, 908
LweI GCATC 4 cut(s) 451, 483, 579, 1011
MaeI CTAG 2 cut(s) 530, 794
MaeIII GTNAC 3 cut(s) 385, 856, 911
MalI GATC 5 cut(s) 330, 481, 621, 932, 1034
MboI GATC 5 cut(s) 328, 479, 619, 930, 1032
MboII GAAGA 8 cut(s) 112, 115, 134, 211, 214, 416, 489, 759
MhlI GDGCHC 2 cut(s) 163, 351
MlsI TGGCCA 1 cut(s) 659
MluNI TGGCCA 1 cut(s) 659
MlyI GAGTC 2 cut(s) 272, 676
MmeI TCCRAC 1 cut(s) 597
Mox20I TGGCCA 1 cut(s) 659
MroI TCCGGA 1 cut(s) 239
MscI TGGCCA 1 cut(s) 659
MseI TTAA 2 cut(s) 942, 965
MslI CAYNNNNRTG 2 cut(s) 123, 665
Msp20I TGGCCA 1 cut(s) 659
MspI CCGG 4 cut(s) 240, 674, 807, 980
Mva1269I GAATGC 1 cut(s) 830
MwoI GCNNNNNNNGC 1 cut(s) 533
NcoI CCATGG 1 cut(s) 1002
NdeI CATATG 1 cut(s) 38
NdeII GATC 5 cut(s) 328, 479, 619, 930, 1032
NlaIII CATG 7 cut(s) 122, 398, 476, 631, 689, 864, 1006
NlaIV GGNNCC 5 cut(s) 162, 238, 444, 672, 984
NmuCI GTSAC 2 cut(s) 385, 856
PaeR7I CTCGAG 1 cut(s) 636
PceI AGGCCT 1 cut(s) 997
PciSI GCTCTTC 1 cut(s) 742
PctI GAATGC 1 cut(s) 830
PkrI GCNGC 2 cut(s) 538, 923
Ple19I CGATCG 1 cut(s) 933
PleI GAGTC 2 cut(s) 272, 676
PpsI GAGTC 2 cut(s) 272, 676
PshBI ATTAAT 1 cut(s) 965
PsiI TTATAA 1 cut(s) 261
Psp124BI GAGCTC 1 cut(s) 351
PspN4I GGNNCC 5 cut(s) 162, 238, 444, 672, 984
PspPI GGNCC 1 cut(s) 115
PspXI VCTCGAGB 1 cut(s) 636
PvuI CGATCG 1 cut(s) 933
RsaI GTAC 2 cut(s) 554, 903
RsaNI GTAC 2 cut(s) 553, 902
RseI CAYNNNNRTG 2 cut(s) 123, 665
SacI GAGCTC 1 cut(s) 351
SapI GCTCTTC 1 cut(s) 742
SaqAI TTAA 2 cut(s) 942, 965
SatI GCNGC 2 cut(s) 537, 922
Sau3AI GATC 5 cut(s) 328, 479, 619, 930, 1032
Sau96I GGNCC 1 cut(s) 115
SchI GAGTC 2 cut(s) 272, 676
SduI GDGCHC 2 cut(s) 163, 351
SfaNI GCATC 4 cut(s) 451, 483, 579, 1011
Sfr274I CTCGAG 1 cut(s) 636
SinI GGWCC 1 cut(s) 115
SlaI CTCGAG 1 cut(s) 636
SmiMI CAYNNNNRTG 2 cut(s) 123, 665
SmlI CTYRAG 2 cut(s) 636, 1025
SmoI CTYRAG 2 cut(s) 636, 1025
SseBI AGGCCT 1 cut(s) 997
SsiI CCGC 1 cut(s) 376
SspI AATATT 1 cut(s) 734
SspMI CTAG 2 cut(s) 530, 794
SstI GAGCTC 1 cut(s) 351
StuI AGGCCT 1 cut(s) 997
StyI CCWWGG 1 cut(s) 1002
TaaI ACNGT 6 cut(s) 256, 271, 757, 776, 911, 949
TaqI TCGA 8 cut(s) 331, 339, 351, 637, 692, 929, 933, 975
TatI WGTACW 1 cut(s) 901
Tru1I TTAA 2 cut(s) 942, 965
Tru9I TTAA 2 cut(s) 942, 965
TscAI CASTG 4 cut(s) 213, 412, 762, 952
TseFI GTSAC 2 cut(s) 385, 856
TseI GCWGC 2 cut(s) 536, 921
Tsp45I GTSAC 2 cut(s) 385, 856
TspDTI ATGAA 7 cut(s) 135, 185, 383, 450, 548, 823, 840
TspGWI ACGGA 3 cut(s) 200, 500, 836
TspRI CASTG 4 cut(s) 213, 412, 762, 952
VpaK11BI GGWCC 1 cut(s) 115
VspI ATTAAT 1 cut(s) 965
XhoI CTCGAG 1 cut(s) 636
XspI CTAG 2 cut(s) 530, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.