Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013875

Physical Location & Seq

Genomic Coordinates Reverse (-)

11056118 .. 11057838

Gene Structure 1721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g17360.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGAAATGCTTTGATTCTAGCATTCTACATAACCATATGCTGTATTGCTTTTGTAATATCGAAGATCATAATCGCAGTCCTCATCTATAGGCGATGGAAGAGAAAGCACTTGGTTTTCGAACATGGCTTCTCAGGTGGGAAAATGGTTTTGTTCAGGGCACCAGTTATGCAATCTCTCAAATCAGATGTGTTCTTAAAGAAGACACTGAAGTTGAGCAACAAGGACATCATTGGCTCTGGAGGGTATGGGACAGTTTATAAGCTTACAGTCAATGAGACCATGGCCTTTGCTGTGAAGAGATTGAACAGAGGAAGTGCAGATAGAGATCGAGGATTTGAGAGAGAACTCGAAGCCATGGGGGATATAAAGCACCGGAATATTGTGACTCTTCATGGATATTACACTGCTCCACATTATAATCTTCTCATATATGAACTGGTAGCTAATGGAAGCTTGGATGGAGTTCTTCATGGAAGATCAATGACCAACAAGCGTTTGGATTGGCCGGCCAGATACAAAGTAGCACTAGGTGCTGCAAGAGGAATATCATACCTTCATCATGATTGCATCCCTCATATAATCCATAGAGATATCAAGTCAAGCAATATATTGTTGGATCAAAACATGGAGGCTCGAGTGTCTGATTTTGGGCTGGCAACTTTGATGGAACCAGATAAGACTCATGTTTCAACTCTTGTTGCTGGAACTTTTGGATACTTAGCACCTGAATATTTTGATACCGGAAGAGCAACAGCAAAAGGGGATGTTTACAGTTTTGGAGTGGTTTTACTAGAGCTTCTAACTGGAAAAAAGCCTACCGATGAAGCATTTGTTGAGGAAGGAACAAAGCTTGTGACATGGGTGAAAGCGGTTGTTCAGGACAAGAAGGAGGAGTATGTACTTGACAATAAGTTAGGATGTTGTCCAGAGGACGAGATTAACAGTGCCTTTAGCATTGCATTAATGTGCCTTGAACCAGAGCCTTCCAAGAGGCCTACCATGGCTGAGGTTGTCAAGATGCTTGAGCAGATTAGAAGTGATAAAGTTCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

352

Amino Acids

39.35

Weight (kDa)

8.83

Isoelectric Point (pI)

32.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	74 - 340	1.4e-47	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	75 - 342	1.4e-46	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013875)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78530 AT1G78530
fragaria_vesca	FvH4_3g17360
malus_domestica	MD11G1273500.v1.1
prunus_persica	Prupe.4G153600_v2.0.a1
pyrus_communis	pycom11g24120
rosa_chinensis	RchiOBHm_Chr5g0028881
rosa_laevigata	RLG00000033122
rosa_multiflora	Rmu_co8260251.1_g000001 Rmu_sc0000638.1_g000038
rosa_roxburghii	Rroxscaffold_1G00051000
rosa_rugosa	Rorug05G0111200
rosa_samantha	Rh5AG203500 Rh5BG201600 Rh5CG222600 Rh5DG205200
rosa_wichuraiana	Rw5G018410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	261, 420
AccB1I	GGYRCC	1 cut(s)	160
AciI	CCGC	1 cut(s)	872
AclWI	GGATC	1 cut(s)	627
AcoI	YGGCCR	2 cut(s)	506, 510
AcuI	CTGAAG	1 cut(s)	230
AdeI	CACNNNGTG	1 cut(s)	533
AfaI	GTAC	1 cut(s)	903
AgsI	TTSAA	3 cut(s)	307, 693, 977
AluBI	AGCT	5 cut(s)	265, 446, 456, 799, 853
AluI	AGCT	5 cut(s)	265, 446, 456, 799, 853
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	627
Ama87I	CYCGRG	1 cut(s)	636
AoxI	GGCC	4 cut(s)	285, 506, 510, 995
ApeKI	GCWGC	1 cut(s)	536
AseI	ATTAAT	1 cut(s)	965
AsuHPI	GGTGA	1 cut(s)	877
AsuII	TTCGAA	1 cut(s)	120
AvaI	CYCGRG	1 cut(s)	636
BaeGI	GKGCMC	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	160
BbsI	GAAGAC	1 cut(s)	209
BbvCI	CCTCAGC	1 cut(s)	1008
BbvI	GCAGC	1 cut(s)	523
BccI	CCATC	3 cut(s)	90, 455, 661
BciVI	GTATCC	1 cut(s)	710
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	3 cut(s)	20, 530, 794
BfmI	CTRYAG	1 cut(s)	88
BfuI	GTATCC	1 cut(s)	710
BisI	GCNGC	1 cut(s)	537
BlsI	GCNGC	1 cut(s)	538
BmeT110I	CYCGRG	1 cut(s)	636
BmiI	GGNNCC	2 cut(s)	162, 672
BmsI	GCATC	2 cut(s)	579, 1011
BpiI	GAAGAC	1 cut(s)	209
BpmI	CTGGAG	1 cut(s)	261
Bpu10I	CCTNAGC	1 cut(s)	1008
Bpu14I	TTCGAA	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	1046
BsaBI	GATNNNNATC	2 cut(s)	71, 327
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	3 cut(s)	282, 357, 1002
BsaWI	WCCGGW	2 cut(s)	375, 743
Bse118I	RCCGGY	1 cut(s)	508
Bse1I	ACTGG	3 cut(s)	164, 444, 811
Bse3DI	GCAATG	1 cut(s)	957
Bse8I	GATNNNNATC	2 cut(s)	71, 327
BseDI	CCNNGG	3 cut(s)	282, 357, 1002
BseGI	GGATG	4 cut(s)	466, 570, 772, 926
BseJI	GATNNNNATC	2 cut(s)	71, 327
BseMI	GCAATG	1 cut(s)	957
BseMII	CTCAG	2 cut(s)	147, 999
BseNI	ACTGG	3 cut(s)	164, 444, 811
BseRI	GAGGAG	1 cut(s)	908
BseSI	GKGCMC	1 cut(s)	163
BseXI	GCAGC	1 cut(s)	523
BsgI	GTGCAG	1 cut(s)	339
BshFI	GGCC	4 cut(s)	287, 508, 512, 997
BshNI	GGYRCC	1 cut(s)	160
BsiHKCI	CYCGRG	1 cut(s)	636
BsiSI	CCGG	3 cut(s)	376, 509, 744
BslFI	GGGAC	1 cut(s)	265
BsmAI	GTCTC	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	265
BsmI	GAATGC	1 cut(s)	23
BsnI	GGCC	4 cut(s)	287, 508, 512, 997
Bso31I	GGTCTC	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	636
Bsp119I	TTCGAA	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	4 cut(s)	66, 328, 479, 619
Bsp19I	CCATGG	3 cut(s)	282, 357, 1002
BspACI	CCGC	1 cut(s)	872
BspANI	GGCC	4 cut(s)	287, 508, 512, 997
BspCNI	CTCAG	2 cut(s)	146, 1000
BspHI	TCATGA	1 cut(s)	562
BspLI	GGNNCC	2 cut(s)	162, 672
BspPI	GGATC	1 cut(s)	627
BspQI	GCTCTTC	1 cut(s)	742
BspT104I	TTCGAA	1 cut(s)	120
BspT107I	GGYRCC	1 cut(s)	160
BspTNI	GGTCTC	1 cut(s)	272
BsrDI	GCAATG	1 cut(s)	957
BsrFI	RCCGGY	1 cut(s)	508
BsrI	ACTGG	3 cut(s)	164, 444, 811
BssAI	RCCGGY	1 cut(s)	508
BssECI	CCNNGG	3 cut(s)	282, 357, 1002
BssMI	GATC	4 cut(s)	66, 328, 479, 619
BssT1I	CCWWGG	3 cut(s)	282, 357, 1002
Bst4CI	ACNGT	4 cut(s)	256, 271, 776, 947
Bst6I	CTCTTC	4 cut(s)	95, 293, 396, 742
BstAPI	GCANNNNNTGC	1 cut(s)	533
BstBI	TTCGAA	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	510, 657
BstDEI	CTNAG	3 cut(s)	133, 721, 1008
BstDSI	CCRYGG	3 cut(s)	282, 357, 1002
BstF5I	GGATG	4 cut(s)	466, 570, 772, 926
BstKTI	GATC	4 cut(s)	69, 331, 482, 622
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	4 cut(s)	66, 328, 479, 619
BstMWI	GCNNNNNNNGC	1 cut(s)	533
BstSFI	CTRYAG	1 cut(s)	88
BstSLI	GKGCMC	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	523
BstV2I	GAAGAC	1 cut(s)	209
BsuI	GTATCC	1 cut(s)	710
BsuRI	GGCC	4 cut(s)	287, 508, 512, 997
BtgI	CCRYGG	3 cut(s)	282, 357, 1002
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	4 cut(s)	466, 570, 772, 926
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	3 cut(s)	206, 405, 952
Cac8I	GCNNGC	2 cut(s)	510, 657
CciI	TCATGA	1 cut(s)	562
Cfr10I	RCCGGY	1 cut(s)	508
Csp6I	GTAC	1 cut(s)	902
CviQI	GTAC	1 cut(s)	902
DdeI	CTNAG	3 cut(s)	133, 721, 1008
DpnI	GATC	4 cut(s)	68, 330, 481, 621
DpnII	GATC	4 cut(s)	66, 328, 479, 619
DraIII	CACNNNGTG	1 cut(s)	533
EaeI	YGGCCR	2 cut(s)	506, 510
Eam1104I	CTCTTC	4 cut(s)	95, 293, 396, 742
EarI	CTCTTC	4 cut(s)	95, 293, 396, 742
Eco130I	CCWWGG	3 cut(s)	282, 357, 1002
Eco147I	AGGCCT	1 cut(s)	997
Eco31I	GGTCTC	1 cut(s)	272
Eco32I	GATATC	1 cut(s)	595
Eco57I	CTGAAG	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	636
EcoRV	GATATC	1 cut(s)	595
EcoT14I	CCWWGG	3 cut(s)	282, 357, 1002
ErhI	CCWWGG	3 cut(s)	282, 357, 1002
FaqI	GGGAC	1 cut(s)	265
FauNDI	CATATG	1 cut(s)	38
Fnu4HI	GCNGC	1 cut(s)	537
FokI	GGATG	4 cut(s)	473, 557, 779, 933
FseI	GGCCGGCC	1 cut(s)	512
Fsp4HI	GCNGC	1 cut(s)	537
FspBI	CTAG	3 cut(s)	20, 530, 794
GluI	GCNGC	1 cut(s)	537
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	4 cut(s)	287, 508, 512, 997
HapII	CCGG	3 cut(s)	376, 509, 744
HindIII	AAGCTT	3 cut(s)	263, 454, 851
HinfI	GANTC	3 cut(s)	16, 388, 682
HpaII	CCGG	3 cut(s)	376, 509, 744
HphI	GGTGA	1 cut(s)	877
Hpy166II	GTNNAC	1 cut(s)	772
Hpy188I	TCNGA	2 cut(s)	187, 646
Hpy188III	TCNNGA	5 cut(s)	240, 563, 881, 929, 1018
Hpy8I	GTNNAC	1 cut(s)	772
HpyAV	CCTTC	4 cut(s)	566, 836, 883, 996
HpyCH4III	ACNGT	4 cut(s)	256, 271, 776, 947
HpyCH4V	TGCA	5 cut(s)	172, 320, 539, 570, 962
HpyF10VI	GCNNNNNNNGC	1 cut(s)	533
HpyF3I	CTNAG	3 cut(s)	133, 721, 1008
KroI	GCCGGC	1 cut(s)	508
KroNI	GCCGGC	1 cut(s)	510
Kzo9I	GATC	4 cut(s)	66, 328, 479, 619
LguI	GCTCTTC	1 cut(s)	742
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	1 cut(s)	523
LweI	GCATC	2 cut(s)	579, 1011
MaeI	CTAG	3 cut(s)	20, 530, 794
MaeIII	GTNAC	2 cut(s)	385, 856
MalI	GATC	4 cut(s)	68, 330, 481, 621
MboI	GATC	4 cut(s)	66, 328, 479, 619
MboII	GAAGA	9 cut(s)	76, 112, 214, 310, 383, 416, 461, 489, 759
MhlI	GDGCHC	1 cut(s)	163
MlyI	GAGTC	2 cut(s)	382, 676
MmeI	TCCRAC	1 cut(s)	597
MroNI	GCCGGC	1 cut(s)	508
MseI	TTAA	3 cut(s)	197, 942, 965
MslI	CAYNNNNRTG	1 cut(s)	967
MspI	CCGG	3 cut(s)	376, 509, 744
Mva1269I	GAATGC	1 cut(s)	23
MwoI	GCNNNNNNNGC	1 cut(s)	533
NaeI	GCCGGC	1 cut(s)	510
NcoI	CCATGG	3 cut(s)	282, 357, 1002
NdeI	CATATG	1 cut(s)	38
NdeII	GATC	4 cut(s)	66, 328, 479, 619
NgoMIV	GCCGGC	1 cut(s)	508
NlaIV	GGNNCC	2 cut(s)	162, 672
NmuCI	GTSAC	2 cut(s)	385, 856
NspV	TTCGAA	1 cut(s)	120
PaeR7I	CTCGAG	1 cut(s)	636
PagI	TCATGA	1 cut(s)	562
PceI	AGGCCT	1 cut(s)	997
PciSI	GCTCTTC	1 cut(s)	742
PctI	GAATGC	1 cut(s)	23
PdiI	GCCGGC	1 cut(s)	510
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	1 cut(s)	538
PleI	GAGTC	2 cut(s)	382, 676
PpsI	GAGTC	2 cut(s)	382, 676
PshBI	ATTAAT	1 cut(s)	965
PsiI	TTATAA	2 cut(s)	261, 420
PspN4I	GGNNCC	2 cut(s)	162, 672
PspXI	VCTCGAGB	1 cut(s)	636
RigI	GGCCGGCC	1 cut(s)	512
RsaI	GTAC	1 cut(s)	903
RsaNI	GTAC	1 cut(s)	902
RseI	CAYNNNNRTG	1 cut(s)	967
SapI	GCTCTTC	1 cut(s)	742
SaqAI	TTAA	3 cut(s)	197, 942, 965
SatI	GCNGC	1 cut(s)	537
Sau3AI	GATC	4 cut(s)	66, 328, 479, 619
SchI	GAGTC	2 cut(s)	382, 676
SduI	GDGCHC	1 cut(s)	163
SfaNI	GCATC	2 cut(s)	579, 1011
SfcI	CTRYAG	1 cut(s)	88
Sfr274I	CTCGAG	1 cut(s)	636
SfuI	TTCGAA	1 cut(s)	120
SlaI	CTCGAG	1 cut(s)	636
SmiMI	CAYNNNNRTG	1 cut(s)	967
SmlI	CTYRAG	2 cut(s)	636, 1025
SmoI	CTYRAG	2 cut(s)	636, 1025
SseBI	AGGCCT	1 cut(s)	997
SsiI	CCGC	1 cut(s)	872
SspI	AATATT	2 cut(s)	382, 734
SspMI	CTAG	3 cut(s)	20, 530, 794
StuI	AGGCCT	1 cut(s)	997
StyI	CCWWGG	3 cut(s)	282, 357, 1002
TaaI	ACNGT	4 cut(s)	256, 271, 776, 947
TaqI	TCGA	5 cut(s)	62, 120, 331, 351, 637
TatI	WGTACW	1 cut(s)	901
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	3 cut(s)	197, 942, 965
Tru9I	TTAA	3 cut(s)	197, 942, 965
TscAI	CASTG	3 cut(s)	213, 412, 952
TseFI	GTSAC	2 cut(s)	385, 856
TseI	GCWGC	1 cut(s)	536
Tsp45I	GTSAC	2 cut(s)	385, 856
TspDTI	ATGAA	5 cut(s)	383, 450, 461, 548, 840
TspRI	CASTG	3 cut(s)	213, 412, 952
VspI	ATTAAT	1 cut(s)	965
XcmI	CCANNNNNNNNNTGG	1 cut(s)	496
XhoI	CTCGAG	1 cut(s)	636
XspI	CTAG	3 cut(s)	20, 530, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.