RLG00000033122

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0013875
Physical Location & Seq
Reverse (-)
23568493 .. 23569974
1482 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033122

Sequence Viewer

Length: 999 bp
ATGGGAAAAAATGCTTTGGGTCTGGCATTTTACATAACCATATGCTGTATTGCTTTTGTAATATCGAAGATTATAATCGCAGTCCTCATCTATAGGCGATGGAAGAGAAAGCACTTGGTTTTCGAACATGGCTTCTCAGGTGGGAAAATGGTTTTGTTCAGGGCACCAGTAATGCAATCTCTGAAATCAGATGTGTTCTTAAAGAAGACGCTGAAGTTAAGCAACAAGGACATCATTGGCTCAGGAGGGTATGGGACAGTTTATAAACTTACAATAAATGAAACCATGGCCTTTGCTGTGAAAAGACTGAACAGAGGAAGTGCAGATAGAGATCGAGGATTTGAGAGAGAACTCGAAGCAATGGGGGACATAAAGCACCGGAACATTGTGACTCTTCATGGATATTATACGGCTCCACATTATAACCTTCTCATATACGAACTGGTAGCTAACGGCAGCTTGGATGGAGTACTTTATGGAAGATCAATGACCAACAAGCGTTTAGATTGGCCGTCCAGATACAAAATAGCACTAGGTGCTGCAAGAGGAATATCATACCTTCATCATGATTGCATCCCTCACATAATCCATAGAGATATCAAGTCAAGCAATATATTGTTGGATCAAAACATGGAGGCTCGAGTGTCTGATTTCGGGCTGGCAACTTTGATGGAACCGGATAAGACTCATGTTTCAACACTTGTAGCTGGAACTTTTGGATACTTAGCTCCTGAATATTTTGATACCGGAAGAGCAACAGCAAAAGGGGATGTTTACAGTTTTGGAGTGGTATTACTAGAGCTTCTAACCGGTAAAAAGCCTACAGATGGAGCATTTGTTGAGGAAGGAACAAAGCTTGTGACGTGGGTAAGTTATGAAAGAATATCAGAGATTGACCATGGAGAAGTTAACAACTATCAGAGATTTTGGGTTTTATTAAGAGCAAAAGAGTATTATCTTTCAGAACCAACTGTTTCTGTTACTGAAGGCCAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

333

Amino Acids

37.42

Weight (kDa)

9.17

Isoelectric Point (pI)

24.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 75 - 277 1e-43 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 76 - 282 1.2e-41 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013875)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78530 AT1G78530
fragaria_vesca FvH4_3g17360
malus_domestica MD11G1273500.v1.1
prunus_persica Prupe.4G153600_v2.0.a1
pyrus_communis pycom11g24120
rosa_chinensis RchiOBHm_Chr5g0028881
rosa_laevigata RLG00000033122
rosa_multiflora Rmu_co8260251.1_g000001 Rmu_sc0000638.1_g000038
rosa_roxburghii Rroxscaffold_1G00051000
rosa_rugosa Rorug05G0111200
rosa_samantha Rh5AG203500 Rh5BG201600 Rh5CG222600 Rh5DG205200
rosa_wichuraiana Rw5G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 74, 264, 423
AccB1I GGYRCC 1 cut(s) 163
AclWI GGATC 1 cut(s) 630
AcoI YGGCCR 1 cut(s) 509
AcuI CTGAAG 1 cut(s) 233
AdeI CACNNNGTG 1 cut(s) 536
AfaI GTAC 1 cut(s) 471
AfiI CCNNNNNNNGG 1 cut(s) 827
AgeI ACCGGT 1 cut(s) 809
AgsI TTSAA 1 cut(s) 696
AjiI CACGTC 1 cut(s) 864
AluBI AGCT 6 cut(s) 449, 459, 707, 728, 802, 856
AluI AGCT 6 cut(s) 449, 459, 707, 728, 802, 856
AlwI GGATC 1 cut(s) 630
Ama87I CYCGRG 1 cut(s) 639
AoxI GGCC 3 cut(s) 288, 509, 988
ApeKI GCWGC 2 cut(s) 456, 539
AsiGI ACCGGT 1 cut(s) 809
AsuII TTCGAA 1 cut(s) 123
AvaI CYCGRG 1 cut(s) 639
BaeGI GKGCMC 1 cut(s) 166
BanI GGYRCC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 212
BbvI GCAGC 2 cut(s) 468, 526
BccI CCATC 4 cut(s) 93, 458, 664, 821
BceAI ACGGC 3 cut(s) 426, 469, 496
BciVI GTATCC 1 cut(s) 713
BfaI CTAG 2 cut(s) 533, 797
BfmI CTRYAG 2 cut(s) 91, 822
BfuI GTATCC 1 cut(s) 713
BisI GCNGC 2 cut(s) 457, 540
BlsI GCNGC 2 cut(s) 458, 541
BmcAI AGTACT 1 cut(s) 471
BmeT110I CYCGRG 1 cut(s) 639
BmgBI CACGTC 1 cut(s) 864
BmiI GGNNCC 3 cut(s) 165, 414, 675
BmsI GCATC 1 cut(s) 582
BpiI GAAGAC 1 cut(s) 212
Bpu10I CCTNAGC 1 cut(s) 241
Bpu14I TTCGAA 1 cut(s) 123
BsaBI GATNNNNATC 2 cut(s) 74, 330
BsaJI CCNNGG 2 cut(s) 285, 898
BsaWI WCCGGW 4 cut(s) 378, 676, 746, 809
BsaXI ACNNNNNCTCC 2 cut(s) 822, 852
Bsc4I CCNNNNNNNGG 1 cut(s) 827
Bse118I RCCGGY 1 cut(s) 809
Bse1I ACTGG 2 cut(s) 167, 447
Bse3DI GCAATG 1 cut(s) 366
Bse8I GATNNNNATC 2 cut(s) 74, 330
BseDI CCNNGG 2 cut(s) 285, 898
BseGI GGATG 3 cut(s) 469, 573, 775
BseJI GATNNNNATC 2 cut(s) 74, 330
BseLI CCNNNNNNNGG 1 cut(s) 827
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 2 cut(s) 150, 255
BseNI ACTGG 2 cut(s) 167, 447
BseSI GKGCMC 1 cut(s) 166
BseXI GCAGC 2 cut(s) 468, 526
BsgI GTGCAG 1 cut(s) 342
BshFI GGCC 3 cut(s) 290, 511, 990
BshNI GGYRCC 1 cut(s) 163
BshTI ACCGGT 1 cut(s) 809
BsiHKCI CYCGRG 1 cut(s) 639
BsiSI CCGG 4 cut(s) 379, 677, 747, 810
BslFI GGGAC 2 cut(s) 268, 380
BslI CCNNNNNNNGG 1 cut(s) 827
BsmFI GGGAC 2 cut(s) 268, 380
BsnI GGCC 3 cut(s) 290, 511, 990
BsoBI CYCGRG 1 cut(s) 639
Bsp119I TTCGAA 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 3 cut(s) 331, 482, 622
Bsp19I CCATGG 2 cut(s) 285, 898
BspANI GGCC 3 cut(s) 290, 511, 990
BspCNI CTCAG 2 cut(s) 149, 254
BspHI TCATGA 1 cut(s) 565
BspLI GGNNCC 3 cut(s) 165, 414, 675
BspPI GGATC 1 cut(s) 630
BspQI GCTCTTC 1 cut(s) 745
BspT104I TTCGAA 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 163
BsrDI GCAATG 1 cut(s) 366
BsrFI RCCGGY 1 cut(s) 809
BsrI ACTGG 2 cut(s) 167, 447
BssAI RCCGGY 1 cut(s) 809
BssECI CCNNGG 2 cut(s) 285, 898
BssMI GATC 3 cut(s) 331, 482, 622
BssT1I CCWWGG 2 cut(s) 285, 898
Bst4CI ACNGT 3 cut(s) 259, 779, 973
Bst6I CTCTTC 3 cut(s) 98, 399, 745
BstAPI GCANNNNNTGC 1 cut(s) 536
BstBI TTCGAA 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 660
BstDEI CTNAG 3 cut(s) 136, 241, 724
BstDSI CCRYGG 2 cut(s) 285, 898
BstF5I GGATG 3 cut(s) 469, 573, 775
BstKTI GATC 3 cut(s) 334, 485, 625
BstMBI GATC 3 cut(s) 331, 482, 622
BstMWI GCNNNNNNNGC 1 cut(s) 536
BstSFI CTRYAG 2 cut(s) 91, 822
BstSLI GKGCMC 1 cut(s) 166
BstV1I GCAGC 2 cut(s) 468, 526
BstV2I GAAGAC 1 cut(s) 212
BsuI GTATCC 1 cut(s) 713
BsuRI GGCC 3 cut(s) 290, 511, 990
BtgI CCRYGG 2 cut(s) 285, 898
BtgZI GCGATG 1 cut(s) 112
BtrI CACGTC 1 cut(s) 864
BtsCI GGATG 3 cut(s) 469, 573, 775
Cac8I GCNNGC 1 cut(s) 660
CciI TCATGA 1 cut(s) 565
Cfr10I RCCGGY 1 cut(s) 809
CseI GACGC 1 cut(s) 217
Csp6I GTAC 1 cut(s) 470
CspAI ACCGGT 1 cut(s) 809
CviAII CATG 7 cut(s) 128, 286, 398, 566, 631, 689, 899
CviQI GTAC 1 cut(s) 470
DdeI CTNAG 3 cut(s) 136, 241, 724
DpnI GATC 3 cut(s) 333, 484, 624
DpnII GATC 3 cut(s) 331, 482, 622
DraIII CACNNNGTG 1 cut(s) 536
EaeI YGGCCR 1 cut(s) 509
Eam1104I CTCTTC 3 cut(s) 98, 399, 745
EarI CTCTTC 3 cut(s) 98, 399, 745
Eco130I CCWWGG 2 cut(s) 285, 898
Eco32I GATATC 1 cut(s) 598
Eco57I CTGAAG 1 cut(s) 233
Eco88I CYCGRG 1 cut(s) 639
EcoRV GATATC 1 cut(s) 598
EcoT14I CCWWGG 2 cut(s) 285, 898
ErhI CCWWGG 2 cut(s) 285, 898
FaeI CATG 7 cut(s) 131, 289, 401, 569, 634, 692, 902
FaqI GGGAC 2 cut(s) 268, 380
FatI CATG 7 cut(s) 127, 285, 397, 565, 630, 688, 898
FauNDI CATATG 1 cut(s) 41
Fnu4HI GCNGC 2 cut(s) 457, 540
FokI GGATG 3 cut(s) 476, 560, 782
Fsp4HI GCNGC 2 cut(s) 457, 540
FspBI CTAG 2 cut(s) 533, 797
GluI GCNGC 2 cut(s) 457, 540
HaeIII GGCC 3 cut(s) 290, 511, 990
HapII CCGG 4 cut(s) 379, 677, 747, 810
HgaI GACGC 1 cut(s) 217
Hin1II CATG 7 cut(s) 131, 289, 401, 569, 634, 692, 902
HincII GTYRAC 1 cut(s) 910
HindII GTYRAC 1 cut(s) 910
HindIII AAGCTT 1 cut(s) 854
HinfI GANTC 2 cut(s) 391, 685
HpaI GTTAAC 1 cut(s) 910
HpaII CCGG 4 cut(s) 379, 677, 747, 810
Hpy166II GTNNAC 2 cut(s) 775, 910
Hpy188I TCNGA 6 cut(s) 183, 190, 649, 889, 921, 964
Hpy188III TCNNGA 4 cut(s) 243, 516, 566, 731
Hpy8I GTNNAC 2 cut(s) 775, 910
HpyAV CCTTC 4 cut(s) 437, 569, 839, 980
HpyCH4III ACNGT 3 cut(s) 259, 779, 973
HpyCH4IV ACGT 1 cut(s) 863
HpyCH4V TGCA 4 cut(s) 175, 323, 542, 573
HpyF10VI GCNNNNNNNGC 1 cut(s) 536
HpyF3I CTNAG 3 cut(s) 136, 241, 724
HpySE526I ACGT 1 cut(s) 863
Hsp92II CATG 7 cut(s) 131, 289, 401, 569, 634, 692, 902
KspAI GTTAAC 1 cut(s) 910
Kzo9I GATC 3 cut(s) 331, 482, 622
LguI GCTCTTC 1 cut(s) 745
LmnI GCTCC 3 cut(s) 418, 733, 830
Lsp1109I GCAGC 2 cut(s) 468, 526
LweI GCATC 1 cut(s) 582
MaeI CTAG 2 cut(s) 533, 797
MaeII ACGT 1 cut(s) 863
MaeIII GTNAC 3 cut(s) 388, 859, 979
MalI GATC 3 cut(s) 333, 484, 624
MboI GATC 3 cut(s) 331, 482, 622
MboII GAAGA 6 cut(s) 79, 115, 217, 386, 492, 762
MhlI GDGCHC 1 cut(s) 166
MlyI GAGTC 2 cut(s) 385, 679
MmeI TCCRAC 1 cut(s) 600
MnlI CCTC 8 cut(s) 95, 239, 308, 329, 539, 588, 628, 835
MseI TTAA 4 cut(s) 200, 218, 909, 938
MspI CCGG 4 cut(s) 379, 677, 747, 810
MwoI GCNNNNNNNGC 1 cut(s) 536
NcoI CCATGG 2 cut(s) 285, 898
NdeI CATATG 1 cut(s) 41
NdeII GATC 3 cut(s) 331, 482, 622
NlaIII CATG 7 cut(s) 131, 289, 401, 569, 634, 692, 902
NlaIV GGNNCC 3 cut(s) 165, 414, 675
NmuCI GTSAC 2 cut(s) 388, 859
NspV TTCGAA 1 cut(s) 123
PaeR7I CTCGAG 1 cut(s) 639
PagI TCATGA 1 cut(s) 565
PciSI GCTCTTC 1 cut(s) 745
PinAI ACCGGT 1 cut(s) 809
PkrI GCNGC 2 cut(s) 458, 541
PleI GAGTC 2 cut(s) 385, 679
PpsI GAGTC 2 cut(s) 385, 679
PsiI TTATAA 3 cut(s) 74, 264, 423
PspN4I GGNNCC 3 cut(s) 165, 414, 675
PspXI VCTCGAGB 1 cut(s) 639
RsaI GTAC 1 cut(s) 471
RsaNI GTAC 1 cut(s) 470
SapI GCTCTTC 1 cut(s) 745
SaqAI TTAA 4 cut(s) 200, 218, 909, 938
SatI GCNGC 2 cut(s) 457, 540
Sau3AI GATC 3 cut(s) 331, 482, 622
ScaI AGTACT 1 cut(s) 471
SchI GAGTC 2 cut(s) 385, 679
SduI GDGCHC 1 cut(s) 166
SfaNI GCATC 1 cut(s) 582
SfcI CTRYAG 2 cut(s) 91, 822
Sfr274I CTCGAG 1 cut(s) 639
SfuI TTCGAA 1 cut(s) 123
SlaI CTCGAG 1 cut(s) 639
SmlI CTYRAG 1 cut(s) 639
SmoI CTYRAG 1 cut(s) 639
SspI AATATT 1 cut(s) 737
SspMI CTAG 2 cut(s) 533, 797
StyI CCWWGG 2 cut(s) 285, 898
TaaI ACNGT 3 cut(s) 259, 779, 973
TaiI ACGT 1 cut(s) 866
TaqI TCGA 5 cut(s) 65, 123, 334, 354, 640
TatI WGTACW 1 cut(s) 469
Tru1I TTAA 4 cut(s) 200, 218, 909, 938
Tru9I TTAA 4 cut(s) 200, 218, 909, 938
TseFI GTSAC 2 cut(s) 388, 859
TseI GCWGC 2 cut(s) 456, 539
Tsp45I GTSAC 2 cut(s) 388, 859
TspDTI ATGAA 4 cut(s) 294, 386, 551, 891
XhoI CTCGAG 1 cut(s) 639
XspI CTAG 2 cut(s) 533, 797
ZrmI AGTACT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.