Rorug05G0111200

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
9923849 .. 9929857
6009 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0111200.1

Sequence Viewer

Length: 1392 bp
ATGGCGACGAGGGCGGGCAGTAGTTCGAGTCGGACTCGGGTCGGGAGGTACGATCTGGGTCGGACCCTAGGGGAGGGCAATTTCGCCAAGGTCAAGTTTGCGAGGAACATCGAGACTGGTGAGAATTTCGCTATTAAGATTCTGGACAAAGAGAAGGTCCTCAAGCACAAGATGATCGGCCAGATCAAACGAGAAATATCAACGATGAAGTTAATTAGACATCCCAATGTAATCCGTATGTATGAGGTGATGGCTAGCAAGACAAAAATATACATCGTTTTGGAGTTTGTGACTGGTGGAGAACTATTTGACAAAATTGCAAGTAAAGGAAGATTGAAAGAAGATGAAGCAAGGAAGTATTTTCAGCAGCTTATAAATGCAGTGGATTACTGCCATAGCAGAGGTGTTTTCCATAGAGACCTGAAGCCTGAGAATTTGCTGCTGGATGCTAATGGAGTGCTTAAAGTTTCAGATTTTGGGCTCAGTGCGCTGCCTCAGCAAGTTCGAGAAGATGGATTACTTCACACAACATGTGGGACACCAAATTATGTTGCCCCTGAGGTCATCAACAACAAAGGGTATGATGGAGCAAAGGCTGATCTATGGTCTTGTGGTGTGATTCTTTTTGTCTTGATGGCTGGCTATCTGCCTTTTGAAGATTCCAATCTCATGTCATTATATAAAAAGATATTCAAGGCTGAGTTCTCATGTCCTCCATGGTTCTCCTCAAGTGCAAAGAAGCTAATTAAGAGAATCTTGGACCCTAACCCCTTGACACGAATTACAATTGCTGAGGTCATTGAGAATGAGTGGTTCAAGAAAGGGTATAAAGCACCTAATTTTGAACAAGTTGATGTTAGTCTCGATGATGTGGATGCGATATTCAATGATTCAGGGGATACTCAGAACCTTGTAGTTGAGAGGCGAGAGGAACGACATGTGCCTGTTACCATGAATGCCTTTGAGCTTATCTCTACATCTCAGGGCCTGAATCTCAATAGTCTTTTTGAGAAACAGATGGAACTTGTTAAACGAGAAACAAGATTCACATCCAAACGTCCTGCTAATGAGATTATTTCTAAAATTGAGGAAGCTGCAGCACCATTGGGTTTTGGTGTGAAGAAAAATAATTTTAAGTTGAAGCTTCAAGGTGAAAAAACTGGGCGTAAAGGTCATCTATCTGTTGCAACAGAGATTTTTGAGGTGGCCCCTTCACTCTACATGGTTGAAGTCCGCAAGTCAGGGGGAGACACACTGGAATTTCACAATTTCTACAAGAACCTTTCCACGGGGCTGAAGGATATTGTCTGGAAGTCGGGAGATGAGTCAAGGAGGGAAGCAGAACTTGGTTCTGGTGCTGTTGTTGGTGCAGGTGCAGTGCCATCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

463

Amino Acids

51.9

Weight (kDa)

9.08

Isoelectric Point (pI)

35.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 17 - 272 1.2e-76 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 19 - 268 8.7e-39 Protein tyrosine and serine/threonine kinase
Kinase-like PF14531 105 - 222 3.9e-06 Kinase-like
NAF PF03822 315 - 375 9.3e-23 NAF domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013875)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78530 AT1G78530
fragaria_vesca FvH4_3g17360
malus_domestica MD11G1273500.v1.1
prunus_persica Prupe.4G153600_v2.0.a1
pyrus_communis pycom11g24120
rosa_chinensis RchiOBHm_Chr5g0028881
rosa_laevigata RLG00000033122
rosa_multiflora Rmu_co8260251.1_g000001 Rmu_sc0000638.1_g000038
rosa_roxburghii Rroxscaffold_1G00051000
rosa_rugosa Rorug05G0111200
rosa_samantha Rh5AG203500 Rh5BG201600 Rh5CG222600 Rh5DG205200
rosa_wichuraiana Rw5G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 374
AarI CACCTGC 1 cut(s) 1361
Acc36I ACCTGC 1 cut(s) 1361
AciI CCGC 2 cut(s) 14, 1234
AcoI YGGCCR 1 cut(s) 178
AcsI RAATTY 3 cut(s) 124, 433, 1259
AcuI CTGAAG 2 cut(s) 443, 1316
AfaI GTAC 1 cut(s) 50
AfiI CCNNNNNNNGG 2 cut(s) 73, 1288
AflIII ACRYGT 2 cut(s) 530, 937
AgsI TTSAA 9 cut(s) 337, 656, 694, 817, 845, 886, 1141, 1148, 1229
AjuI GAANNNNNNNTTGG 2 cut(s) 1329, 1361
AluBI AGCT 5 cut(s) 370, 742, 967, 1094, 1144
AluI AGCT 5 cut(s) 370, 742, 967, 1094, 1144
Alw26I GTCTC 4 cut(s) 107, 411, 866, 1242
AlwNI CAGNNNCTG 1 cut(s) 988
Ama87I CYCGRG 1 cut(s) 36
AoxI GGCC 3 cut(s) 178, 985, 1206
ApeKI GCWGC 5 cut(s) 367, 439, 490, 1094, 1097
ApoI RAATTY 3 cut(s) 124, 433, 1259
ArsI GACNNNNNNTTYG 2 cut(s) 141, 173
AspA2I CCTAGG 1 cut(s) 67
AspLEI GCGC 1 cut(s) 490
AspS9I GGNCC 5 cut(s) 63, 157, 760, 985, 1207
AsuHPI GGTGA 3 cut(s) 131, 259, 1163
AsuNHI GCTAGC 1 cut(s) 254
AvaI CYCGRG 1 cut(s) 36
AvaII GGWCC 3 cut(s) 63, 157, 760
AvrII CCTAGG 1 cut(s) 67
AxyI CCTNAGG 1 cut(s) 558
BanII GRGCYC 1 cut(s) 483
BarI GAAGNNNNNNTAC 2 cut(s) 501, 533
BbvCI CCTCAGC 2 cut(s) 495, 792
BbvI GCAGC 5 cut(s) 379, 426, 477, 1081, 1109
BccI CCATC 6 cut(s) 244, 506, 578, 628, 1012, 1390
BciVI GTATCC 1 cut(s) 892
BcoDI GTCTC 4 cut(s) 107, 411, 866, 1242
BfaI CTAG 2 cut(s) 68, 255
BfmI CTRYAG 1 cut(s) 1095
BfuAI ACCTGC 1 cut(s) 1361
BfuI GTATCC 1 cut(s) 892
BisI GCNGC 5 cut(s) 368, 440, 491, 1095, 1098
BlnI CCTAGG 1 cut(s) 67
BlsI GCNGC 5 cut(s) 369, 441, 492, 1096, 1099
Bme18I GGWCC 3 cut(s) 63, 157, 760
BmeT110I CYCGRG 1 cut(s) 36
BmgT120I GGNCC 5 cut(s) 63, 157, 760, 985, 1207
BmiI GGNNCC 3 cut(s) 65, 762, 1209
BmrI ACTGGG 1 cut(s) 1170
BmsI GCATC 2 cut(s) 436, 865
BmtI GCTAGC 1 cut(s) 258
BmuI ACTGGG 1 cut(s) 1170
BoxI GACNNNNGTC 1 cut(s) 38
BplI GAGNNNNNCTC 4 cut(s) 19, 51, 956, 988
Bpu10I CCTNAGC 2 cut(s) 495, 792
BpuEI CTTGAG 2 cut(s) 146, 712
BsaBI GATNNNNATC 2 cut(s) 663, 1048
BsaI GGTCTC 1 cut(s) 411
BsaJI CCNNGG 4 cut(s) 67, 87, 716, 1287
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 1288
Bse1I ACTGG 4 cut(s) 121, 298, 1165, 1260
Bse21I CCTNAGG 1 cut(s) 558
Bse8I GATNNNNATC 2 cut(s) 663, 1048
BseDI CCNNGG 4 cut(s) 67, 87, 716, 1287
BseGI GGATG 4 cut(s) 220, 451, 880, 1049
BseJI GATNNNNATC 2 cut(s) 663, 1048
BseLI CCNNNNNNNGG 2 cut(s) 73, 1288
BseMII CTCAG 8 cut(s) 420, 496, 509, 549, 690, 783, 917, 995
BseNI ACTGG 4 cut(s) 121, 298, 1165, 1260
BseRI GAGGAG 1 cut(s) 715
BseXI GCAGC 5 cut(s) 379, 426, 477, 1081, 1109
BsgI GTGCAG 1 cut(s) 1389
BshFI GGCC 3 cut(s) 180, 987, 1208
BsiHKCI CYCGRG 1 cut(s) 36
BslFI GGGAC 1 cut(s) 550
BslI CCNNNNNNNGG 2 cut(s) 73, 1288
BsmAI GTCTC 4 cut(s) 107, 411, 866, 1242
BsmFI GGGAC 1 cut(s) 550
BsmI GAATGC 1 cut(s) 961
BsnI GGCC 3 cut(s) 180, 987, 1208
Bso31I GGTCTC 1 cut(s) 411
BsoBI CYCGRG 1 cut(s) 36
Bsp1286I GDGCHC 1 cut(s) 483
Bsp143I GATC 4 cut(s) 52, 174, 183, 598
Bsp19I CCATGG 1 cut(s) 716
BspACI CCGC 2 cut(s) 14, 1234
BspANI GGCC 3 cut(s) 180, 987, 1208
BspCNI CTCAG 8 cut(s) 421, 495, 508, 550, 691, 784, 916, 994
BspLI GGNNCC 3 cut(s) 65, 762, 1209
BspMAI CTGCAG 1 cut(s) 1099
BspMI ACCTGC 1 cut(s) 1361
BspOI GCTAGC 1 cut(s) 258
BspTNI GGTCTC 1 cut(s) 411
BsrI ACTGG 4 cut(s) 121, 298, 1165, 1260
BssECI CCNNGG 4 cut(s) 67, 87, 716, 1287
BssMI GATC 4 cut(s) 52, 174, 183, 598
BssT1I CCWWGG 3 cut(s) 67, 87, 716
BstC8I GCNNGC 3 cut(s) 16, 256, 640
BstDEI CTNAG 8 cut(s) 429, 482, 495, 558, 699, 792, 903, 981
BstDSI CCRYGG 2 cut(s) 716, 1287
BstENI CCTNNNNNAGG 1 cut(s) 71
BstF5I GGATG 4 cut(s) 220, 451, 880, 1049
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 4 cut(s) 55, 177, 186, 601
BstMAI GTCTC 4 cut(s) 107, 411, 866, 1242
BstMBI GATC 4 cut(s) 52, 174, 183, 598
BstMWI GCNNNNNNNGC 3 cut(s) 11, 487, 496
BstNSI RCATGY 2 cut(s) 534, 941
BstPAI GACNNNNGTC 1 cut(s) 38
BstSFI CTRYAG 1 cut(s) 1095
BstV1I GCAGC 5 cut(s) 379, 426, 477, 1081, 1109
Bsu36I CCTNAGG 1 cut(s) 558
BsuI GTATCC 1 cut(s) 892
BsuRI GGCC 3 cut(s) 180, 987, 1208
BtgI CCRYGG 2 cut(s) 716, 1287
BtsCI GGATG 4 cut(s) 220, 451, 880, 1049
BtsI GCAGTG 2 cut(s) 387, 1383
BtsIMutI CAGTG 4 cut(s) 387, 490, 1253, 1383
BveI ACCTGC 1 cut(s) 1361
Cac8I GCNNGC 3 cut(s) 16, 256, 640
CaiI CAGNNNCTG 1 cut(s) 988
CfoI GCGC 1 cut(s) 490
Cfr13I GGNCC 5 cut(s) 63, 157, 760, 985, 1207
Csp6I GTAC 1 cut(s) 49
CviAII CATG 8 cut(s) 531, 670, 708, 717, 938, 952, 1222, 1389
CviQI GTAC 1 cut(s) 49
DdeI CTNAG 8 cut(s) 429, 482, 495, 558, 699, 792, 903, 981
DpnI GATC 4 cut(s) 54, 176, 185, 600
DpnII GATC 4 cut(s) 52, 174, 183, 598
EaeI YGGCCR 1 cut(s) 178
Eco130I CCWWGG 3 cut(s) 67, 87, 716
Eco24I GRGCYC 1 cut(s) 483
Eco31I GGTCTC 1 cut(s) 411
Eco47I GGWCC 3 cut(s) 63, 157, 760
Eco57I CTGAAG 2 cut(s) 443, 1316
Eco81I CCTNAGG 1 cut(s) 558
Eco88I CYCGRG 1 cut(s) 36
EcoNI CCTNNNNNAGG 1 cut(s) 71
EcoO109I RGGNCCY 2 cut(s) 157, 985
EcoT14I CCWWGG 3 cut(s) 67, 87, 716
EcoT38I GRGCYC 1 cut(s) 483
ErhI CCWWGG 3 cut(s) 67, 87, 716
FaeI CATG 8 cut(s) 534, 673, 711, 720, 941, 955, 1225, 1392
FalI AAGNNNNNCTT 4 cut(s) 740, 772, 1329, 1361
FaqI GGGAC 1 cut(s) 550
FatI CATG 8 cut(s) 530, 669, 707, 716, 937, 951, 1221, 1388
FauI CCCGC 1 cut(s) 7
Fnu4HI GCNGC 5 cut(s) 368, 440, 491, 1095, 1098
FokI GGATG 4 cut(s) 207, 458, 887, 1036
FriOI GRGCYC 1 cut(s) 483
Fsp4HI GCNGC 5 cut(s) 368, 440, 491, 1095, 1098
FspBI CTAG 2 cut(s) 68, 255
GlaI GCGC 1 cut(s) 489
GluI GCNGC 5 cut(s) 368, 440, 491, 1095, 1098
HaeIII GGCC 3 cut(s) 180, 987, 1208
HhaI GCGC 1 cut(s) 490
Hin1II CATG 8 cut(s) 534, 673, 711, 720, 941, 955, 1225, 1392
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HindIII AAGCTT 1 cut(s) 1142
HphI GGTGA 3 cut(s) 131, 259, 1163
Hpy188I TCNGA 4 cut(s) 33, 63, 472, 906
Hpy188III TCNNGA 9 cut(s) 43, 112, 143, 506, 631, 817, 863, 1309, 1317
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 148, 1221, 1291
HpyCH4IV ACGT 1 cut(s) 1057
HpyCH4V TGCA 7 cut(s) 320, 380, 734, 1097, 1187, 1370, 1376
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 487, 496
HpyF3I CTNAG 8 cut(s) 429, 482, 495, 558, 699, 792, 903, 981
HpySE526I ACGT 1 cut(s) 1057
Hsp92II CATG 8 cut(s) 534, 673, 711, 720, 941, 955, 1225, 1392
HspAI GCGC 1 cut(s) 488
Kzo9I GATC 4 cut(s) 52, 174, 183, 598
LmnI GCTCC 1 cut(s) 587
Lsp1109I GCAGC 5 cut(s) 379, 426, 477, 1081, 1109
LweI GCATC 2 cut(s) 436, 865
MaeI CTAG 2 cut(s) 68, 255
MaeII ACGT 1 cut(s) 1057
MaeIII GTNAC 2 cut(s) 289, 946
MalI GATC 4 cut(s) 54, 176, 185, 600
MboI GATC 4 cut(s) 52, 174, 183, 598
MboII GAAGA 5 cut(s) 342, 353, 521, 668, 1132
MfeI CAATTG 1 cut(s) 786
MhlI GDGCHC 1 cut(s) 483
MlyI GAGTC 3 cut(s) 28, 37, 1334
MmeI TCCRAC 2 cut(s) 11, 41
MseI TTAA 6 cut(s) 135, 212, 462, 747, 1029, 1134
MslI CAYNNNNRTG 2 cut(s) 225, 1387
MunI CAATTG 1 cut(s) 786
Mva1269I GAATGC 1 cut(s) 961
MwoI GCNNNNNNNGC 3 cut(s) 11, 487, 496
NcoI CCATGG 1 cut(s) 716
NdeII GATC 4 cut(s) 52, 174, 183, 598
NheI GCTAGC 1 cut(s) 254
NlaIII CATG 8 cut(s) 534, 673, 711, 720, 941, 955, 1225, 1392
NlaIV GGNNCC 3 cut(s) 65, 762, 1209
NmuCI GTSAC 1 cut(s) 289
NspI RCATGY 2 cut(s) 534, 941
PaqCI CACCTGC 1 cut(s) 1361
PciI ACATGT 2 cut(s) 530, 937
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PctI GAATGC 1 cut(s) 961
PfeI GAWTC 7 cut(s) 139, 619, 659, 753, 890, 991, 1044
PkrI GCNGC 5 cut(s) 369, 441, 492, 1096, 1099
PleI GAGTC 3 cut(s) 28, 36, 1333
PpsI GAGTC 3 cut(s) 28, 36, 1333
PpuMI RGGWCCY 1 cut(s) 157
PscI ACATGT 2 cut(s) 530, 937
PshAI GACNNNNGTC 1 cut(s) 38
PsiI TTATAA 1 cut(s) 374
Psp5II RGGWCCY 1 cut(s) 157
PspN4I GGNNCC 3 cut(s) 65, 762, 1209
PspPI GGNCC 5 cut(s) 63, 157, 760, 985, 1207
PspPPI RGGWCCY 1 cut(s) 157
PstI CTGCAG 1 cut(s) 1099
PstNI CAGNNNCTG 1 cut(s) 988
RsaI GTAC 1 cut(s) 50
RsaNI GTAC 1 cut(s) 49
RseI CAYNNNNRTG 2 cut(s) 225, 1387
SaqAI TTAA 6 cut(s) 135, 212, 462, 747, 1029, 1134
SatI GCNGC 5 cut(s) 368, 440, 491, 1095, 1098
Sau3AI GATC 4 cut(s) 52, 174, 183, 598
Sau96I GGNCC 5 cut(s) 63, 157, 760, 985, 1207
SchI GAGTC 3 cut(s) 28, 37, 1334
SduI GDGCHC 1 cut(s) 483
SfaNI GCATC 2 cut(s) 436, 865
SfcI CTRYAG 1 cut(s) 1095
SinI GGWCC 3 cut(s) 63, 157, 760
SmiMI CAYNNNNRTG 2 cut(s) 225, 1387
SmlI CTYRAG 2 cut(s) 161, 727
SmoI CTYRAG 2 cut(s) 161, 727
SsiI CCGC 2 cut(s) 14, 1234
SspMI CTAG 2 cut(s) 68, 255
StyI CCWWGG 3 cut(s) 67, 87, 716
TaiI ACGT 1 cut(s) 1060
TaqI TCGA 4 cut(s) 26, 111, 505, 864
TfiI GAWTC 7 cut(s) 139, 619, 659, 753, 890, 991, 1044
Tru1I TTAA 6 cut(s) 135, 212, 462, 747, 1029, 1134
Tru9I TTAA 6 cut(s) 135, 212, 462, 747, 1029, 1134
TscAI CASTG 4 cut(s) 387, 490, 1260, 1383
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 5 cut(s) 367, 439, 490, 1094, 1097
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 3 cut(s) 221, 360, 968
TspGWI ACGGA 1 cut(s) 224
TspRI CASTG 4 cut(s) 387, 490, 1260, 1383
VpaK11BI GGWCC 3 cut(s) 63, 157, 760
XagI CCTNNNNNAGG 1 cut(s) 71
XapI RAATTY 3 cut(s) 124, 433, 1259
XceI RCATGY 2 cut(s) 534, 941
XmaJI CCTAGG 1 cut(s) 67
XspI CTAG 2 cut(s) 68, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.