RchiOBHm_Chr5g0028881

receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0013875
Physical Location & Seq
Reverse (-)
22678372 .. 22680326
1955 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30829

Sequence Viewer

Length: 1065 bp
ATGGGAAAACATGCTTCGGTTCTGGCATTTTACATAACCATATGCTGTATTGCTTTTGTAATATCGAAGATTATAATCGCAGTCCTCATCTATAGGCGATGGAAGAGAAAGCACTTGGTTTTCGAACATGGCTTCTCAGGTGGGAAAATGGTTTTGTTCAGGGCACCGGTAATGCAATCTCTGAAATCAGATGTGTTCTTAAAGAAGACGCTGAAGTTAAGCAACAAGGACATCATTGGCTCAGGAGGGTATGGGACAGTTTATAAACTTACAATAAATGAAACCATGGCCTTTGCTGTGAAAAGACTGAACAGAGGAAGTGCAGATAGAGATCGAGGATTTGAGAGAGAACTCGAAGCAATGGGGGACATAAAGCACCGGAACATTGTGACTCTTCATGGATATTATACTGCTCCACATTATAACCTTCTCATATACGAACTGGTAGCTAATGGCAGCTTGGATGGAGTACTTTATGGAAGATCAATGACCAACAAGCGTTTAGATTGGCCGTCCAGATACAAAATAGCACTAGGTGCTGCAAGAGGAATATCATACCTTCATCATGATTGCATCCCTCACATAATCCATAGAGATATCAAGTCAAGCAATATATTGTTGGATCAAAACATGGAGGCTCGAGTGTCTGATTTCGGGCTGGCAACTTTGATGGAACCGGATAAGACTCATGTTTCAACACTAGTAGCTGGAACTTTTGGATACTTAGCTCCTGAATATTTTGATACTGGAAGAGCAACAGCCAAAGGGGATGTTTACAGTTTTGGAGTGGTTTTACTAGAGCTTCTAACTGGTAAAAAGCCTACAGATGAAGCATTTGTTGAGGAAGGAACAAAGCTTGTGACGTGGGTGAAGGGAGTTGTTCAGGACAAGAGGGAGGAGTATGTACTTGACAGTAGCTTAGGGTGTTGTCCAGGAGATGAGATTAACAATGCCTTTAGCATTGCACTAATGTGCCTTGAACCAGAGGCTTCCAAGCGGCCTACCATGGCTGAGGTTGTCAAGATGCTTGAGCAGATAAGAAGTGACAAAGTTATAGATACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

354

Amino Acids

39.63

Weight (kDa)

8.83

Isoelectric Point (pI)

30.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 75 - 341 3.7e-46 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 76 - 343 1.6e-44 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013875)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78530 AT1G78530
fragaria_vesca FvH4_3g17360
malus_domestica MD11G1273500.v1.1
prunus_persica Prupe.4G153600_v2.0.a1
pyrus_communis pycom11g24120
rosa_chinensis RchiOBHm_Chr5g0028881
rosa_laevigata RLG00000033122
rosa_multiflora Rmu_co8260251.1_g000001 Rmu_sc0000638.1_g000038
rosa_roxburghii Rroxscaffold_1G00051000
rosa_rugosa Rorug05G0111200
rosa_samantha Rh5AG203500 Rh5BG201600 Rh5CG222600 Rh5DG205200
rosa_wichuraiana Rw5G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 3 cut(s) 74, 264, 423
AccB1I GGYRCC 1 cut(s) 163
AciI CCGC 1 cut(s) 997
AclWI GGATC 1 cut(s) 630
AcoI YGGCCR 1 cut(s) 509
AcuI CTGAAG 1 cut(s) 233
AdeI CACNNNGTG 1 cut(s) 536
AfaI GTAC 2 cut(s) 471, 906
AgeI ACCGGT 1 cut(s) 166
AgsI TTSAA 2 cut(s) 696, 980
AhlI ACTAGT 1 cut(s) 700
AjiI CACGTC 1 cut(s) 864
AjnI CCWGG 1 cut(s) 931
AleI CACNNNNGTG 1 cut(s) 970
AluBI AGCT 7 cut(s) 449, 459, 707, 728, 802, 856, 918
AluI AGCT 7 cut(s) 449, 459, 707, 728, 802, 856, 918
AlwI GGATC 1 cut(s) 630
Ama87I CYCGRG 1 cut(s) 639
AoxI GGCC 3 cut(s) 288, 509, 998
ApeKI GCWGC 2 cut(s) 456, 539
AsiGI ACCGGT 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 880
AsuII TTCGAA 1 cut(s) 123
AvaI CYCGRG 1 cut(s) 639
BaeGI GKGCMC 1 cut(s) 166
BanI GGYRCC 1 cut(s) 163
BbsI GAAGAC 1 cut(s) 212
BbvCI CCTCAGC 1 cut(s) 1011
BbvI GCAGC 2 cut(s) 468, 526
BccI CCATC 3 cut(s) 93, 458, 664
BceAI ACGGC 1 cut(s) 496
BciT130I CCWGG 1 cut(s) 933
BciVI GTATCC 1 cut(s) 713
BcuI ACTAGT 1 cut(s) 700
BfaI CTAG 3 cut(s) 533, 701, 797
BfmI CTRYAG 2 cut(s) 91, 822
BfuI GTATCC 1 cut(s) 713
BisI GCNGC 3 cut(s) 457, 540, 998
BlsI GCNGC 3 cut(s) 458, 541, 999
BmcAI AGTACT 1 cut(s) 471
Bme1390I CCNGG 1 cut(s) 933
BmeT110I CYCGRG 1 cut(s) 639
BmgBI CACGTC 1 cut(s) 864
BmiI GGNNCC 2 cut(s) 165, 675
BmrFI CCNGG 1 cut(s) 933
BmsI GCATC 2 cut(s) 582, 1014
BpiI GAAGAC 1 cut(s) 212
Bpu10I CCTNAGC 3 cut(s) 241, 919, 1011
Bpu14I TTCGAA 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 1049
BsaBI GATNNNNATC 2 cut(s) 74, 330
BsaJI CCNNGG 2 cut(s) 285, 1005
BsaWI WCCGGW 3 cut(s) 166, 378, 676
Bse118I RCCGGY 1 cut(s) 166
Bse1I ACTGG 3 cut(s) 447, 751, 814
Bse3DI GCAATG 2 cut(s) 366, 960
Bse8I GATNNNNATC 2 cut(s) 74, 330
BseBI CCWGG 1 cut(s) 933
BseDI CCNNGG 2 cut(s) 285, 1005
BseGI GGATG 3 cut(s) 469, 573, 775
BseJI GATNNNNATC 2 cut(s) 74, 330
BseMI GCAATG 2 cut(s) 366, 960
BseMII CTCAG 3 cut(s) 150, 255, 1002
BseNI ACTGG 3 cut(s) 447, 751, 814
BseRI GAGGAG 1 cut(s) 911
BseSI GKGCMC 1 cut(s) 166
BseXI GCAGC 2 cut(s) 468, 526
BsgI GTGCAG 1 cut(s) 342
BshFI GGCC 3 cut(s) 290, 511, 1000
BshNI GGYRCC 1 cut(s) 163
BshTI ACCGGT 1 cut(s) 166
BsiHKCI CYCGRG 1 cut(s) 639
BsiSI CCGG 3 cut(s) 167, 379, 677
BslFI GGGAC 2 cut(s) 268, 380
BsmFI GGGAC 2 cut(s) 268, 380
BsnI GGCC 3 cut(s) 290, 511, 1000
BsoBI CYCGRG 1 cut(s) 639
Bsp119I TTCGAA 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 3 cut(s) 331, 482, 622
Bsp19I CCATGG 2 cut(s) 285, 1005
BspACI CCGC 1 cut(s) 997
BspANI GGCC 3 cut(s) 290, 511, 1000
BspCNI CTCAG 3 cut(s) 149, 254, 1003
BspHI TCATGA 1 cut(s) 565
BspLI GGNNCC 2 cut(s) 165, 675
BspPI GGATC 1 cut(s) 630
BspQI GCTCTTC 1 cut(s) 745
BspT104I TTCGAA 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 163
BsrDI GCAATG 2 cut(s) 366, 960
BsrFI RCCGGY 1 cut(s) 166
BsrI ACTGG 3 cut(s) 447, 751, 814
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 2 cut(s) 285, 1005
BssMI GATC 3 cut(s) 331, 482, 622
BssT1I CCWWGG 2 cut(s) 285, 1005
Bst2UI CCWGG 1 cut(s) 933
Bst4CI ACNGT 3 cut(s) 259, 779, 914
Bst6I CTCTTC 3 cut(s) 98, 399, 745
BstAPI GCANNNNNTGC 1 cut(s) 536
BstBI TTCGAA 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 660
BstDEI CTNAG 5 cut(s) 136, 241, 724, 919, 1011
BstDSI CCRYGG 2 cut(s) 285, 1005
BstF5I GGATG 3 cut(s) 469, 573, 775
BstKTI GATC 3 cut(s) 334, 485, 625
BstMBI GATC 3 cut(s) 331, 482, 622
BstMWI GCNNNNNNNGC 1 cut(s) 536
BstNI CCWGG 1 cut(s) 933
BstNSI RCATGY 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 931
BstSFI CTRYAG 2 cut(s) 91, 822
BstSLI GKGCMC 1 cut(s) 166
BstV1I GCAGC 2 cut(s) 468, 526
BstV2I GAAGAC 1 cut(s) 212
BsuI GTATCC 1 cut(s) 713
BsuRI GGCC 3 cut(s) 290, 511, 1000
BtgI CCRYGG 2 cut(s) 285, 1005
BtgZI GCGATG 1 cut(s) 112
BtrI CACGTC 1 cut(s) 864
BtsCI GGATG 3 cut(s) 469, 573, 775
Cac8I GCNNGC 1 cut(s) 660
CciI TCATGA 1 cut(s) 565
Cfr10I RCCGGY 1 cut(s) 166
CseI GACGC 1 cut(s) 217
Csp6I GTAC 2 cut(s) 470, 905
CspAI ACCGGT 1 cut(s) 166
CviAII CATG 8 cut(s) 11, 128, 286, 398, 566, 631, 689, 1006
CviQI GTAC 2 cut(s) 470, 905
DdeI CTNAG 5 cut(s) 136, 241, 724, 919, 1011
DpnI GATC 3 cut(s) 333, 484, 624
DpnII GATC 3 cut(s) 331, 482, 622
DraIII CACNNNGTG 1 cut(s) 536
EaeI YGGCCR 1 cut(s) 509
Eam1104I CTCTTC 3 cut(s) 98, 399, 745
EarI CTCTTC 3 cut(s) 98, 399, 745
Eco130I CCWWGG 2 cut(s) 285, 1005
Eco32I GATATC 1 cut(s) 598
Eco57I CTGAAG 1 cut(s) 233
Eco88I CYCGRG 1 cut(s) 639
EcoRII CCWGG 1 cut(s) 931
EcoRV GATATC 1 cut(s) 598
EcoT14I CCWWGG 2 cut(s) 285, 1005
ErhI CCWWGG 2 cut(s) 285, 1005
FaeI CATG 8 cut(s) 14, 131, 289, 401, 569, 634, 692, 1009
FaqI GGGAC 2 cut(s) 268, 380
FatI CATG 8 cut(s) 10, 127, 285, 397, 565, 630, 688, 1005
FauNDI CATATG 1 cut(s) 41
Fnu4HI GCNGC 3 cut(s) 457, 540, 998
FokI GGATG 3 cut(s) 476, 560, 782
Fsp4HI GCNGC 3 cut(s) 457, 540, 998
FspBI CTAG 3 cut(s) 533, 701, 797
GluI GCNGC 3 cut(s) 457, 540, 998
HaeIII GGCC 3 cut(s) 290, 511, 1000
HapII CCGG 3 cut(s) 167, 379, 677
HgaI GACGC 1 cut(s) 217
Hin1II CATG 8 cut(s) 14, 131, 289, 401, 569, 634, 692, 1009
HindIII AAGCTT 1 cut(s) 854
HinfI GANTC 2 cut(s) 391, 685
HpaII CCGG 3 cut(s) 167, 379, 677
HphI GGTGA 1 cut(s) 880
Hpy166II GTNNAC 1 cut(s) 775
Hpy188I TCNGA 3 cut(s) 183, 190, 649
Hpy188III TCNNGA 6 cut(s) 243, 516, 566, 731, 884, 1021
Hpy8I GTNNAC 1 cut(s) 775
HpyAV CCTTC 4 cut(s) 437, 569, 839, 865
HpyCH4III ACNGT 3 cut(s) 259, 779, 914
HpyCH4IV ACGT 1 cut(s) 863
HpyCH4V TGCA 5 cut(s) 175, 323, 542, 573, 965
HpyF10VI GCNNNNNNNGC 1 cut(s) 536
HpyF3I CTNAG 5 cut(s) 136, 241, 724, 919, 1011
HpySE526I ACGT 1 cut(s) 863
Hsp92II CATG 8 cut(s) 14, 131, 289, 401, 569, 634, 692, 1009
Kzo9I GATC 3 cut(s) 331, 482, 622
LguI GCTCTTC 1 cut(s) 745
LmnI GCTCC 2 cut(s) 418, 733
Lsp1109I GCAGC 2 cut(s) 468, 526
LweI GCATC 2 cut(s) 582, 1014
MaeI CTAG 3 cut(s) 533, 701, 797
MaeII ACGT 1 cut(s) 863
MaeIII GTNAC 3 cut(s) 388, 859, 1043
MalI GATC 3 cut(s) 333, 484, 624
MboI GATC 3 cut(s) 331, 482, 622
MboII GAAGA 6 cut(s) 79, 115, 217, 386, 492, 762
MhlI GDGCHC 1 cut(s) 166
MlyI GAGTC 2 cut(s) 385, 679
MmeI TCCRAC 1 cut(s) 600
MseI TTAA 3 cut(s) 200, 218, 945
MslI CAYNNNNRTG 1 cut(s) 970
MspI CCGG 3 cut(s) 167, 379, 677
MspR9I CCNGG 1 cut(s) 933
MvaI CCWGG 1 cut(s) 933
MwoI GCNNNNNNNGC 1 cut(s) 536
NcoI CCATGG 2 cut(s) 285, 1005
NdeI CATATG 1 cut(s) 41
NdeII GATC 3 cut(s) 331, 482, 622
NlaIII CATG 8 cut(s) 14, 131, 289, 401, 569, 634, 692, 1009
NlaIV GGNNCC 2 cut(s) 165, 675
NmuCI GTSAC 3 cut(s) 388, 859, 1043
NspI RCATGY 1 cut(s) 14
NspV TTCGAA 1 cut(s) 123
OliI CACNNNNGTG 1 cut(s) 970
PaeR7I CTCGAG 1 cut(s) 639
PagI TCATGA 1 cut(s) 565
PciSI GCTCTTC 1 cut(s) 745
PfoI TCCNGGA 1 cut(s) 931
PinAI ACCGGT 1 cut(s) 166
PkrI GCNGC 3 cut(s) 458, 541, 999
PleI GAGTC 2 cut(s) 385, 679
PpsI GAGTC 2 cut(s) 385, 679
PsiI TTATAA 3 cut(s) 74, 264, 423
Psp6I CCWGG 1 cut(s) 931
PspGI CCWGG 1 cut(s) 931
PspN4I GGNNCC 2 cut(s) 165, 675
PspXI VCTCGAGB 1 cut(s) 639
RsaI GTAC 2 cut(s) 471, 906
RsaNI GTAC 2 cut(s) 470, 905
RseI CAYNNNNRTG 1 cut(s) 970
SapI GCTCTTC 1 cut(s) 745
SaqAI TTAA 3 cut(s) 200, 218, 945
SatI GCNGC 3 cut(s) 457, 540, 998
Sau3AI GATC 3 cut(s) 331, 482, 622
ScaI AGTACT 1 cut(s) 471
SchI GAGTC 2 cut(s) 385, 679
ScrFI CCNGG 1 cut(s) 933
SduI GDGCHC 1 cut(s) 166
SfaNI GCATC 2 cut(s) 582, 1014
SfcI CTRYAG 2 cut(s) 91, 822
Sfr274I CTCGAG 1 cut(s) 639
SfuI TTCGAA 1 cut(s) 123
SlaI CTCGAG 1 cut(s) 639
SmiMI CAYNNNNRTG 1 cut(s) 970
SmlI CTYRAG 2 cut(s) 639, 1028
SmoI CTYRAG 2 cut(s) 639, 1028
SpeI ACTAGT 1 cut(s) 700
SsiI CCGC 1 cut(s) 997
SspI AATATT 1 cut(s) 737
SspMI CTAG 3 cut(s) 533, 701, 797
StyD4I CCNGG 1 cut(s) 931
StyI CCWWGG 2 cut(s) 285, 1005
TaaI ACNGT 3 cut(s) 259, 779, 914
TaiI ACGT 1 cut(s) 866
TaqI TCGA 5 cut(s) 65, 123, 334, 354, 640
TatI WGTACW 2 cut(s) 469, 904
TauI GCSGC 1 cut(s) 1000
Tru1I TTAA 3 cut(s) 200, 218, 945
Tru9I TTAA 3 cut(s) 200, 218, 945
TseFI GTSAC 3 cut(s) 388, 859, 1043
TseI GCWGC 2 cut(s) 456, 539
Tsp45I GTSAC 3 cut(s) 388, 859, 1043
TspDTI ATGAA 4 cut(s) 294, 386, 551, 843
XceI RCATGY 1 cut(s) 14
XhoI CTCGAG 1 cut(s) 639
XspI CTAG 3 cut(s) 533, 701, 797
ZrmI AGTACT 1 cut(s) 471
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.