Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004728

Physical Location & Seq

Genomic Coordinates Forward (+)

29585677 .. 29588389

Gene Structure 2713 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G78660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGATCGACAACAATTGTTTATATAAAGAAGAGCTGAATCGCAATTCTTACTCAGGTCTGGCCAAGGAGGCTTCTGAGTCGATTTTGCTCCCTAGTGAATCCGGATTTGACGGTTCTCGGAGTCCGGTTTGCTCCTCGCCGGATCCGAACCTCAACTACAGACCTGTCATCGGTATCCTGAGTCACCCTGGAGATGGTGCGTCTGGTCGGTTGACCAATGATACGAGCTCGACGTACATCGCTGCTTCGTATGTGAAGTTCGCTGAGGCAGGTGGTGCTCGTGTTATCCCACTCATCTACAACGAACCTGAAGAAGTGCTCTTCCAGAAGCTAGAGTTGGTCAACGGTGTGATATTCACTGGTGGTTGGGCTAAAAAATATGATTATTTCGAGATCGTCAAAAAAATCTTCACTAAAGCTTTGGAGAGAAATGATGCTGGAGAGCATTTCCCAGTATATGGCATTTGCCTCGGATTCGAGCTTATGTCAATTATCATAAGTCAGAACAGAGACATTCTTGAAAGATTTGATGCAGAGGATAATGCATCAAGTCTCCAGTTTGTTGATAATGTTAATAACGATGGAACATTATTCCAAAGATTTCCGCCAGAGTTGTTGAAAAAACTCAGTACAGATTGTTTGGTTATGCAGAAACACAAGTATGGTATCACACCAGCAAACTTTCAAGCCAATCCTGCTTTGTCTAGTTTCTTTGAAATTCTCACAACCTGCATTGATGAAAACAGCAAGACTTATGTTTCAACTGTTAAAGCAAAGAGATACCCAATAACTGGCTTCCAGTGGCATCCTGAGAAAAATGCATTTGAATGGGGATCATCTGCGATTCCACACTCTGAGGATGCAATCCAGGTGACACAGCATGCTGCTAGTTATTTAGTCAGTGAAGCTAGGAAGTCACTGAACAGACCAGAGTCTCAGAAAGTGCTGAGCAATCTCATTTACAACTATAAGCCTACTTACTGTGGATACGCAGGGAGGGGTTACGACGAGGTTTACATTTTTACACAACCAAGATCCCGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006082 GO:0006508 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009987 GO:0016787 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034722 GO:0042558 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044281 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046900 GO:0051186 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00790 ko01523 map00790 map01523

Pfam Domains

Protein Families

GATase Peptidase_C26

Protein Analysis

348

Amino Acids

39.06

Weight (kDa)

5.64

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C26	PF07722	54 - 270	1.2e-12	Peptidase C26
GATase	PF00117	92 - 278	2e-12	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78660 AT1G78660 AT1G78660 AT1G78680 AT1G78680
fragaria_vesca	FvH4_3g18102 FvH4_3g18102 FvH4_3g18102 FvH4_3g18102 FvH4_3g18102 FvH4_3g18102 FvH4_3g18102
malus_domestica	MD00G1184200.v1.1 MD03G1244700.v1.1 MD03G1244800.v1.1
prunus_persica	Prupe.4G159900_v2.0.a1
pyrus_communis	pycom03g19410 pycom11g23430
rosa_chinensis	RchiOBHm_Chr5g0030171 RchiOBHm_Chr5g0030241 RchiOBHm_Chr5g0030431 RchiOBHm_Chr5g0030511
rosa_laevigata	RLG00000033221
rosa_multiflora	Rmu_sc0000280.1_g000003 Rmu_sc0015917.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049790
rosa_rugosa	Rorug05G0118100
rosa_samantha	Rh5AG210300 Rh5BG209500 Rh5DG213700
rosa_wichuraiana	Rw5G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	260
Acc36I	ACCTGC	2 cut(s)	260, 737
AccB7I	CCANNNNNTGG	2 cut(s)	458, 791
AccIII	TCCGGA	1 cut(s)	101
AciI	CCGC	1 cut(s)	605
AclWI	GGATC	4 cut(s)	137, 150, 841, 1029
AcoI	YGGCCR	1 cut(s)	60
AcsI	RAATTY	1 cut(s)	717
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	2 cut(s)	236, 631
AfiI	CCNNNNNNNGG	4 cut(s)	170, 194, 458, 791
AgsI	TTSAA	6 cut(s)	521, 619, 686, 716, 762, 827
AjnI	CCWGG	2 cut(s)	187, 867
AjuI	GAANNNNNNNTTGG	2 cut(s)	320, 352
AluBI	AGCT	6 cut(s)	34, 228, 331, 419, 481, 908
AluI	AGCT	6 cut(s)	34, 228, 331, 419, 481, 908
Alw21I	GWGCWC	3 cut(s)	230, 280, 321
Alw26I	GTCTC	3 cut(s)	504, 557, 939
AlwI	GGATC	4 cut(s)	137, 150, 841, 1029
Aor13HI	TCCGGA	1 cut(s)	101
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	2 cut(s)	242, 884
ApoI	RAATTY	1 cut(s)	717
AsuHPI	GGTGA	2 cut(s)	176, 883
BalI	TGGCCA	1 cut(s)	62
BamHI	GGATCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	230
BauI	CACGAG	1 cut(s)	279
Bbv12I	GWGCWC	3 cut(s)	230, 280, 321
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	2 cut(s)	229, 871
BccI	CCATC	2 cut(s)	188, 575
BcgI	CGANNNNNNTGC	2 cut(s)	451, 485
BciT130I	CCWGG	2 cut(s)	189, 869
BciVI	GTATCC	2 cut(s)	185, 980
BcoDI	GTCTC	3 cut(s)	504, 557, 939
BfaI	CTAG	5 cut(s)	93, 332, 705, 888, 909
BfmI	CTRYAG	1 cut(s)	157
BfuAI	ACCTGC	2 cut(s)	260, 737
BfuI	GTATCC	2 cut(s)	185, 980
BglI	GCCNNNNNGGC	1 cut(s)	68
BisI	GCNGC	2 cut(s)	243, 885
BlpI	GCTNAGC	1 cut(s)	947
BlsI	GCNGC	2 cut(s)	244, 886
Bme1390I	CCNGG	2 cut(s)	189, 869
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	2 cut(s)	189, 869
BmrI	ACTGGG	1 cut(s)	446
BmsI	GCATC	5 cut(s)	424, 520, 554, 814, 850
BmuI	ACTGGG	1 cut(s)	446
BoxI	GACNNNNGTC	1 cut(s)	931
BpmI	CTGGAG	3 cut(s)	210, 459, 539
Bpu10I	CCTNAGC	1 cut(s)	264
Bpu1102I	GCTNAGC	1 cut(s)	947
BsaJI	CCNNGG	3 cut(s)	63, 187, 469
BsaWI	WCCGGW	2 cut(s)	101, 124
Bsc4I	CCNNNNNNNGG	4 cut(s)	170, 194, 458, 791
Bse1I	ACTGG	5 cut(s)	364, 452, 556, 796, 799
BseAI	TCCGGA	1 cut(s)	101
BseBI	CCWGG	2 cut(s)	189, 869
BseDI	CCNNGG	3 cut(s)	63, 187, 469
BseGI	GGATG	2 cut(s)	805, 865
BseLI	CCNNNNNNNGG	4 cut(s)	170, 194, 458, 791
BseMII	CTCAG	9 cut(s)	66, 66, 170, 255, 640, 801, 846, 938, 950
BseNI	ACTGG	5 cut(s)	364, 452, 556, 796, 799
BseRI	GAGGAG	1 cut(s)	124
BseXI	GCAGC	2 cut(s)	229, 871
BshFI	GGCC	1 cut(s)	62
BsiHKAI	GWGCWC	3 cut(s)	230, 280, 321
BsiSI	CCGG	3 cut(s)	102, 125, 140
BslI	CCNNNNNNNGG	4 cut(s)	170, 194, 458, 791
BsmAI	GTCTC	3 cut(s)	504, 557, 939
BsnI	GGCC	1 cut(s)	62
Bsp1286I	GDGCHC	3 cut(s)	230, 280, 321
Bsp13I	TCCGGA	1 cut(s)	101
Bsp143I	GATC	5 cut(s)	3, 142, 393, 833, 1034
Bsp1720I	GCTNAGC	1 cut(s)	947
BspACI	CCGC	1 cut(s)	605
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	9 cut(s)	65, 67, 171, 256, 639, 802, 847, 939, 949
BspEI	TCCGGA	1 cut(s)	101
BspLI	GGNNCC	1 cut(s)	144
BspMI	ACCTGC	2 cut(s)	260, 737
BspPI	GGATC	4 cut(s)	137, 150, 841, 1029
BspQI	GCTCTTC	2 cut(s)	24, 326
BsrI	ACTGG	5 cut(s)	364, 452, 556, 796, 799
BssECI	CCNNGG	3 cut(s)	63, 187, 469
BssMI	GATC	5 cut(s)	3, 142, 393, 833, 1034
BssSI	CACGAG	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	63
Bst2BI	CACGAG	1 cut(s)	279
Bst2UI	CCWGG	2 cut(s)	189, 869
Bst4CI	ACNGT	4 cut(s)	113, 347, 766, 983
Bst6I	CTCTTC	2 cut(s)	24, 326
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstC8I	GCNNGC	1 cut(s)	882
BstDEI	CTNAG	9 cut(s)	52, 75, 179, 264, 626, 810, 855, 936, 947
BstF5I	GGATG	2 cut(s)	805, 865
BstKTI	GATC	5 cut(s)	6, 145, 396, 836, 1037
BstMAI	GTCTC	3 cut(s)	504, 557, 939
BstMBI	GATC	5 cut(s)	3, 142, 393, 833, 1034
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 275, 695
BstNI	CCWGG	2 cut(s)	189, 869
BstNSI	RCATGY	1 cut(s)	884
BstPAI	GACNNNNGTC	1 cut(s)	931
BstSCI	CCNGG	2 cut(s)	187, 867
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	2 cut(s)	229, 871
BstX2I	RGATCY	2 cut(s)	142, 1034
BstYI	RGATCY	2 cut(s)	142, 1034
BsuI	GTATCC	2 cut(s)	185, 980
BsuRI	GGCC	1 cut(s)	62
BtgZI	GCGATG	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	805, 865
BtsIMutI	CAGTG	4 cut(s)	357, 806, 907, 917
BveI	ACCTGC	2 cut(s)	260, 737
Cac8I	GCNNGC	1 cut(s)	882
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	2 cut(s)	235, 630
CviAII	CATG	1 cut(s)	881
CviQI	GTAC	2 cut(s)	235, 630
DdeI	CTNAG	9 cut(s)	52, 75, 179, 264, 626, 810, 855, 936, 947
DpnI	GATC	5 cut(s)	5, 144, 395, 835, 1036
DpnII	GATC	5 cut(s)	3, 142, 393, 833, 1034
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	2 cut(s)	24, 326
EarI	CTCTTC	2 cut(s)	24, 326
EciI	GGCGGA	1 cut(s)	594
Ecl136II	GAGCTC	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	230
Eco53kI	GAGCTC	1 cut(s)	228
Eco57I	CTGAAG	1 cut(s)	330
EcoICRI	GAGCTC	1 cut(s)	228
EcoRII	CCWGG	2 cut(s)	187, 867
EcoT14I	CCWWGG	1 cut(s)	63
EcoT22I	ATGCAT	2 cut(s)	547, 823
EcoT38I	GRGCYC	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	63
FaeI	CATG	1 cut(s)	884
FatI	CATG	1 cut(s)	880
Fnu4HI	GCNGC	2 cut(s)	243, 885
FokI	GGATG	2 cut(s)	792, 872
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	2 cut(s)	243, 885
FspBI	CTAG	5 cut(s)	93, 332, 705, 888, 909
GluI	GCNGC	2 cut(s)	243, 885
GsuI	CTGGAG	3 cut(s)	210, 459, 539
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	3 cut(s)	102, 125, 140
HgaI	GACGC	1 cut(s)	189
Hin1II	CATG	1 cut(s)	884
HincII	GTYRAC	2 cut(s)	213, 343
HindII	GTYRAC	2 cut(s)	213, 343
HindIII	AAGCTT	1 cut(s)	417
HinfI	GANTC	8 cut(s)	37, 77, 98, 121, 181, 474, 844, 932
HpaII	CCGG	3 cut(s)	102, 125, 140
HphI	GGTGA	2 cut(s)	176, 883
Hpy166II	GTNNAC	3 cut(s)	213, 343, 1015
Hpy188I	TCNGA	7 cut(s)	76, 120, 147, 473, 504, 856, 939
Hpy188III	TCNNGA	6 cut(s)	102, 178, 325, 391, 518, 809
Hpy8I	GTNNAC	3 cut(s)	213, 343, 1015
Hpy99I	CGWCG	2 cut(s)	235, 1010
HpyCH4III	ACNGT	4 cut(s)	113, 347, 766, 983
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	6 cut(s)	533, 545, 649, 732, 821, 863
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 275, 695
HpyF3I	CTNAG	9 cut(s)	52, 75, 179, 264, 626, 810, 855, 936, 947
HpySE526I	ACGT	1 cut(s)	233
Hsp92II	CATG	1 cut(s)	884
Kpn2I	TCCGGA	1 cut(s)	101
Kzo9I	GATC	5 cut(s)	3, 142, 393, 833, 1034
LguI	GCTCTTC	2 cut(s)	24, 326
LmnI	GCTCC	2 cut(s)	93, 137
Lsp1109I	GCAGC	2 cut(s)	229, 871
LweI	GCATC	5 cut(s)	424, 520, 554, 814, 850
MaeI	CTAG	5 cut(s)	93, 332, 705, 888, 909
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	4 cut(s)	182, 871, 915, 1001
MalI	GATC	5 cut(s)	5, 144, 395, 835, 1036
MboI	GATC	5 cut(s)	3, 142, 393, 833, 1034
MboII	GAAGA	4 cut(s)	41, 313, 323, 400
MfeI	CAATTG	1 cut(s)	13
MflI	RGATCY	2 cut(s)	142, 1034
MhlI	GDGCHC	3 cut(s)	230, 280, 321
MlsI	TGGCCA	1 cut(s)	62
MluCI	AATT	4 cut(s)	13, 43, 489, 717
MluNI	TGGCCA	1 cut(s)	62
MlyI	GAGTC	4 cut(s)	86, 130, 190, 941
MnlI	CCTC	9 cut(s)	61, 145, 161, 259, 479, 529, 850, 990, 1003
Mox20I	TGGCCA	1 cut(s)	62
Mph1103I	ATGCAT	2 cut(s)	547, 823
MroI	TCCGGA	1 cut(s)	101
MscI	TGGCCA	1 cut(s)	62
MseI	TTAA	2 cut(s)	573, 768
MslI	CAYNNNNRTG	2 cut(s)	660, 826
Msp20I	TGGCCA	1 cut(s)	62
MspI	CCGG	3 cut(s)	102, 125, 140
MspR9I	CCNGG	2 cut(s)	189, 869
MunI	CAATTG	1 cut(s)	13
MvaI	CCWGG	2 cut(s)	189, 869
MwoI	GCNNNNNNNGC	3 cut(s)	68, 275, 695
NdeII	GATC	5 cut(s)	3, 142, 393, 833, 1034
NlaIII	CATG	1 cut(s)	884
NlaIV	GGNNCC	1 cut(s)	144
NmuCI	GTSAC	3 cut(s)	182, 871, 915
NsiI	ATGCAT	2 cut(s)	547, 823
NspI	RCATGY	1 cut(s)	884
PaeI	GCATGC	1 cut(s)	884
PaqCI	CACCTGC	1 cut(s)	260
PciSI	GCTCTTC	2 cut(s)	24, 326
PcsI	WCGNNNNNNNCGW	2 cut(s)	143, 230
PfeI	GAWTC	4 cut(s)	37, 98, 474, 844
PflMI	CCANNNNNTGG	2 cut(s)	458, 791
PkrI	GCNGC	2 cut(s)	244, 886
PleI	GAGTC	4 cut(s)	85, 129, 189, 940
PpsI	GAGTC	4 cut(s)	85, 129, 189, 940
PshAI	GACNNNNGTC	1 cut(s)	931
Psp124BI	GAGCTC	1 cut(s)	230
Psp6I	CCWGG	2 cut(s)	187, 867
PspGI	CCWGG	2 cut(s)	187, 867
PspN4I	GGNNCC	1 cut(s)	144
PsrI	GAACNNNNNNTAC	4 cut(s)	140, 172, 242, 274
PsuI	RGATCY	2 cut(s)	142, 1034
RsaI	GTAC	2 cut(s)	236, 631
RsaNI	GTAC	2 cut(s)	235, 630
RseI	CAYNNNNRTG	2 cut(s)	660, 826
SacI	GAGCTC	1 cut(s)	230
SapI	GCTCTTC	2 cut(s)	24, 326
SaqAI	TTAA	2 cut(s)	573, 768
SatI	GCNGC	2 cut(s)	243, 885
Sau3AI	GATC	5 cut(s)	3, 142, 393, 833, 1034
SchI	GAGTC	4 cut(s)	86, 130, 190, 941
ScrFI	CCNGG	2 cut(s)	189, 869
SduI	GDGCHC	3 cut(s)	230, 280, 321
SfaNI	GCATC	5 cut(s)	424, 520, 554, 814, 850
SfcI	CTRYAG	1 cut(s)	157
SmiMI	CAYNNNNRTG	2 cut(s)	660, 826
SphI	GCATGC	1 cut(s)	884
Sse9I	AATT	4 cut(s)	13, 43, 489, 717
SsiI	CCGC	1 cut(s)	605
SspMI	CTAG	5 cut(s)	93, 332, 705, 888, 909
SstI	GAGCTC	1 cut(s)	230
StyD4I	CCNGG	2 cut(s)	187, 867
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	4 cut(s)	113, 347, 766, 983
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	5 cut(s)	6, 80, 230, 390, 477
TasI	AATT	4 cut(s)	13, 43, 489, 717
TatI	WGTACW	1 cut(s)	629
TfiI	GAWTC	4 cut(s)	37, 98, 474, 844
Tru1I	TTAA	2 cut(s)	573, 768
Tru9I	TTAA	2 cut(s)	573, 768
TscAI	CASTG	4 cut(s)	364, 806, 907, 924
TseFI	GTSAC	3 cut(s)	182, 871, 915
TseI	GCWGC	2 cut(s)	242, 884
Tsp45I	GTSAC	3 cut(s)	182, 871, 915
TspDTI	ATGAA	1 cut(s)	753
TspRI	CASTG	4 cut(s)	364, 806, 907, 924
Van91I	CCANNNNNTGG	2 cut(s)	458, 791
XapI	RAATTY	1 cut(s)	717
XceI	RCATGY	1 cut(s)	884
XspI	CTAG	5 cut(s)	93, 332, 705, 888, 909
Zsp2I	ATGCAT	2 cut(s)	547, 823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.