Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004728

Physical Location & Seq

Genomic Coordinates Forward (+)

29593756 .. 29596308

Gene Structure 2553 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G78680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGTGGAGCTACGTTTGGTTACCGTTGGTAGCTCTATCTCTCTTTAAGGATAGCATCATAATGGCCAAGGCTGCGACGATTCTCCTCCCTAGTCAAACCGGATTTGATATTTCTCGGAGTCCGGTATGCTCTGCTCCGGATCCGAACCTAAATTACAGACCGGTTATTGGTATTCTGAGCCATCCTGGCGACGGTGCGTCAGGTCGTTTGAGCAATGCTACAGACGCGTCCTCCATTGCGGCTTCGTATGTGAAATTAGCTGAGTCTGGTGGAGCACGTGTGATCCCACTCATCTTTAACGAGCCTGAAGAAATTCTCTTTCAGAAGCTAGAATTGGTCAACGGTGTGATACTAACTGGTGGTTGGGCTAAAGAAGGATTGTATTTTGAAATCGTCAAGAAAATCTTCAATAAAGTTTTGGAAAGAAATGATGCTGGAGAGCATTTTCCTATATACGCTATTTGCCTCGGATTTGAGCTCTTGACAATGATCATAAGCCAGAACAGAGACATTTTTGAAAAAATGGATGCAAGAAATTCTGCATCAAGTCTTCAGTTCGTTGAAAATGTTAATATCCAAGGAACCATATTCCAAAGATTTCCTCCAGAGCTGTTGAAAAAACTCGGTACAGATTGTCTGGTTATGCAGAATCATCGGTTTGGTATCTCACCACAAAGCTTTGAAGGAAATATTGCTCTGTCTAATTTCTTTAAAATTGTCACAACATGCGTTGATGACAACGGCAAGGTTTATGTTTCAACAGTTCAATCAACAAAATATCCAGTGACCGGCTTCCAGTGGCATCCTGAGAAAAATGCATTCGAGTGGGGATCATCTAAAATTCCACACTCTGAGGACGCGATCCAGGTGACTCAGCACGCCGCAAATCATCTAGTCAGTGAAGCTAGGAAGTCACTGAACAGACCAGAGTCTAAGAAAGTGCTGAGCAATCTCATTTACAACTATAAGCCTACTTACTGTGGATACGCAGGGATTGGTTACGACGAGGTTTACATCTTCACACAACAACGATCCCTTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006082 GO:0006508 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009987 GO:0016787 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034722 GO:0042558 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044281 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046900 GO:0051186 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00790 ko01523 map00790 map01523

Pfam Domains

Protein Families

Peptidase_C26

Protein Analysis

347

Amino Acids

38.64

Weight (kDa)

6.66

Isoelectric Point (pI)

36.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C26	PF07722	54 - 270	3.1e-12	Peptidase C26
GATase	PF00117	87 - 278	9.7e-12	Glutamine amidotransferase class-I

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78660 AT1G78660 AT1G78660 AT1G78680 AT1G78680
fragaria_vesca	FvH4_3g18102 FvH4_3g18102 FvH4_3g18102 FvH4_3g18102 FvH4_3g18102 FvH4_3g18102 FvH4_3g18102
malus_domestica	MD00G1184200.v1.1 MD03G1244700.v1.1 MD03G1244800.v1.1
prunus_persica	Prupe.4G159900_v2.0.a1
pyrus_communis	pycom03g19410 pycom11g23430
rosa_chinensis	RchiOBHm_Chr5g0030171 RchiOBHm_Chr5g0030241 RchiOBHm_Chr5g0030431 RchiOBHm_Chr5g0030511
rosa_laevigata	RLG00000033221
rosa_multiflora	Rmu_sc0000280.1_g000003 Rmu_sc0015917.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049790
rosa_rugosa	Rorug05G0118100
rosa_samantha	Rh5AG210300 Rh5BG209500 Rh5DG213700
rosa_wichuraiana	Rw5G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	227, 860
AccIII	TCCGGA	1 cut(s)	136
AciI	CCGC	2 cut(s)	239, 882
AclWI	GGATC	6 cut(s)	134, 147, 277, 838, 856, 1026
AcoI	YGGCCR	1 cut(s)	63
AcsI	RAATTY	3 cut(s)	312, 535, 840
AcuI	CTGAAG	2 cut(s)	327, 536
AcvI	CACGTG	1 cut(s)	278
AfaI	GTAC	1 cut(s)	628
AfiI	CCNNNNNNNGG	3 cut(s)	167, 191, 788
AflIII	ACRYGT	2 cut(s)	225, 277
AgeI	ACCGGT	1 cut(s)	160
AgsI	TTSAA	8 cut(s)	389, 409, 518, 563, 616, 683, 759, 767
AhdI	GACNNNNNGTC	1 cut(s)	196
AjnI	CCWGG	2 cut(s)	184, 864
AjuI	GAANNNNNNNTTGG	2 cut(s)	317, 349
AluBI	AGCT	8 cut(s)	9, 32, 260, 328, 478, 610, 678, 905
AluI	AGCT	8 cut(s)	9, 32, 260, 328, 478, 610, 678, 905
Alw21I	GWGCWC	2 cut(s)	277, 480
Alw26I	GTCTC	1 cut(s)	501
AlwI	GGATC	6 cut(s)	134, 147, 277, 838, 856, 1026
Aor13HI	TCCGGA	1 cut(s)	136
AoxI	GGCC	1 cut(s)	63
ApeKI	GCWGC	1 cut(s)	71
ApoI	RAATTY	3 cut(s)	312, 535, 840
AsiGI	ACCGGT	1 cut(s)	160
Asp700I	GAANNNNTTC	2 cut(s)	312, 404
AsuHPI	GGTGA	2 cut(s)	660, 880
BalI	TGGCCA	1 cut(s)	65
BamHI	GGATCC	1 cut(s)	139
BanII	GRGCYC	1 cut(s)	480
BbrPI	CACGTG	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	542
Bbv12I	GWGCWC	2 cut(s)	277, 480
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	1 cut(s)	189
BceAI	ACGGC	1 cut(s)	757
BcgI	CGANNNNNNTGC	2 cut(s)	635, 669
BciT130I	CCWGG	2 cut(s)	186, 866
BciVI	GTATCC	1 cut(s)	977
BclI	TGATCA	1 cut(s)	489
BcoDI	GTCTC	1 cut(s)	501
BfaI	CTAG	4 cut(s)	90, 329, 893, 906
BfmI	CTRYAG	1 cut(s)	219
BfuI	GTATCC	1 cut(s)	977
BglI	GCCNNNNNGGC	1 cut(s)	186
BisI	GCNGC	3 cut(s)	72, 240, 882
BlpI	GCTNAGC	1 cut(s)	944
BlsI	GCNGC	3 cut(s)	73, 241, 883
Bme1390I	CCNGG	2 cut(s)	186, 866
BmeRI	GACNNNNNGTC	1 cut(s)	196
BmiI	GGNNCC	2 cut(s)	141, 583
BmrFI	CCNGG	2 cut(s)	186, 866
BmsI	GCATC	5 cut(s)	63, 421, 517, 551, 811
BoxI	GACNNNNGTC	1 cut(s)	928
BpiI	GAAGAC	1 cut(s)	542
BpmI	CTGGAG	2 cut(s)	456, 588
Bpu1102I	GCTNAGC	1 cut(s)	944
BsaAI	YACGTR	1 cut(s)	278
BsaJI	CCNNGG	3 cut(s)	66, 466, 577
BsaWI	WCCGGW	4 cut(s)	98, 121, 136, 160
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 264, 294
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 191, 788
Bse118I	RCCGGY	2 cut(s)	160, 788
Bse1I	ACTGG	3 cut(s)	361, 782, 796
Bse3DI	GCAATG	2 cut(s)	220, 234
BseAI	TCCGGA	1 cut(s)	136
BseBI	CCWGG	2 cut(s)	186, 866
BseDI	CCNNGG	3 cut(s)	66, 466, 577
BseGI	GGATG	3 cut(s)	181, 532, 802
BseLI	CCNNNNNNNGG	3 cut(s)	167, 191, 788
BseMI	GCAATG	2 cut(s)	220, 234
BseMII	CTCAG	6 cut(s)	167, 252, 798, 843, 887, 935
BseNI	ACTGG	3 cut(s)	361, 782, 796
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	58
Bsh1236I	CGCG	2 cut(s)	227, 860
BshFI	GGCC	1 cut(s)	65
BshTI	ACCGGT	1 cut(s)	160
BsiHKAI	GWGCWC	2 cut(s)	277, 480
BsiSI	CCGG	5 cut(s)	99, 122, 137, 161, 789
BslI	CCNNNNNNNGG	3 cut(s)	167, 191, 788
BsmAI	GTCTC	1 cut(s)	501
BsmI	GAATGC	1 cut(s)	818
BsnI	GGCC	1 cut(s)	65
Bsp1286I	GDGCHC	2 cut(s)	277, 480
Bsp13I	TCCGGA	1 cut(s)	136
Bsp143I	GATC	6 cut(s)	139, 282, 489, 830, 861, 1031
Bsp1720I	GCTNAGC	1 cut(s)	944
BspACI	CCGC	2 cut(s)	239, 882
BspANI	GGCC	1 cut(s)	65
BspCNI	CTCAG	6 cut(s)	168, 253, 799, 844, 886, 936
BspEI	TCCGGA	1 cut(s)	136
BspFNI	CGCG	2 cut(s)	227, 860
BspLI	GGNNCC	2 cut(s)	141, 583
BspPI	GGATC	6 cut(s)	134, 147, 277, 838, 856, 1026
BsrDI	GCAATG	2 cut(s)	220, 234
BsrFI	RCCGGY	2 cut(s)	160, 788
BsrI	ACTGG	3 cut(s)	361, 782, 796
BssAI	RCCGGY	2 cut(s)	160, 788
BssECI	CCNNGG	3 cut(s)	66, 466, 577
BssMI	GATC	6 cut(s)	139, 282, 489, 830, 861, 1031
BssT1I	CCWWGG	2 cut(s)	66, 577
Bst2UI	CCWGG	2 cut(s)	186, 866
Bst4CI	ACNGT	5 cut(s)	24, 194, 344, 763, 980
BstBAI	YACGTR	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	879
BstDEI	CTNAG	7 cut(s)	176, 261, 807, 852, 873, 933, 944
BstEII	GGTNACC	1 cut(s)	18
BstF5I	GGATG	3 cut(s)	181, 532, 802
BstFNI	CGCG	2 cut(s)	227, 860
BstKTI	GATC	6 cut(s)	142, 285, 492, 833, 864, 1034
BstMAI	GTCTC	1 cut(s)	501
BstMBI	GATC	6 cut(s)	139, 282, 489, 830, 861, 1031
BstMWI	GCNNNNNNNGC	3 cut(s)	71, 186, 224
BstNI	CCWGG	2 cut(s)	186, 866
BstNSI	RCATGY	1 cut(s)	729
BstPAI	GACNNNNGTC	1 cut(s)	928
BstPI	GGTNACC	1 cut(s)	18
BstSCI	CCNGG	2 cut(s)	184, 864
BstSFI	CTRYAG	1 cut(s)	219
BstUI	CGCG	2 cut(s)	227, 860
BstV1I	GCAGC	1 cut(s)	58
BstV2I	GAAGAC	1 cut(s)	542
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuI	GTATCC	1 cut(s)	977
BsuRI	GGCC	1 cut(s)	65
BtsCI	GGATG	3 cut(s)	181, 532, 802
BtsIMutI	CAGTG	4 cut(s)	789, 803, 904, 914
Cac8I	GCNNGC	1 cut(s)	879
Cfr10I	RCCGGY	2 cut(s)	160, 788
CseI	GACGC	4 cut(s)	186, 216, 233, 866
Csp6I	GTAC	1 cut(s)	627
CspAI	ACCGGT	1 cut(s)	160
CviAII	CATG	1 cut(s)	726
CviQI	GTAC	1 cut(s)	627
DdeI	CTNAG	7 cut(s)	176, 261, 807, 852, 873, 933, 944
DpnI	GATC	6 cut(s)	141, 284, 491, 832, 863, 1033
DpnII	GATC	6 cut(s)	139, 282, 489, 830, 861, 1031
DraI	TTTAAA	1 cut(s)	712
DriI	GACNNNNNGTC	1 cut(s)	196
EaeI	YGGCCR	1 cut(s)	63
Eam1105I	GACNNNNNGTC	1 cut(s)	196
Ecl136II	GAGCTC	1 cut(s)	478
Eco130I	CCWWGG	2 cut(s)	66, 577
Eco24I	GRGCYC	1 cut(s)	480
Eco53kI	GAGCTC	1 cut(s)	478
Eco57I	CTGAAG	2 cut(s)	327, 536
Eco72I	CACGTG	1 cut(s)	278
Eco91I	GGTNACC	1 cut(s)	18
EcoICRI	GAGCTC	1 cut(s)	478
EcoO65I	GGTNACC	1 cut(s)	18
EcoRII	CCWGG	2 cut(s)	184, 864
EcoT14I	CCWWGG	2 cut(s)	66, 577
EcoT22I	ATGCAT	1 cut(s)	820
EcoT38I	GRGCYC	1 cut(s)	480
ErhI	CCWWGG	2 cut(s)	66, 577
FaeI	CATG	1 cut(s)	729
FalI	AAGNNNNNCTT	2 cut(s)	389, 421
FatI	CATG	1 cut(s)	725
FbaI	TGATCA	1 cut(s)	489
Fnu4HI	GCNGC	3 cut(s)	72, 240, 882
FokI	GGATG	3 cut(s)	168, 539, 789
FriOI	GRGCYC	1 cut(s)	480
Fsp4HI	GCNGC	3 cut(s)	72, 240, 882
FspBI	CTAG	4 cut(s)	90, 329, 893, 906
GluI	GCNGC	3 cut(s)	72, 240, 882
GsuI	CTGGAG	2 cut(s)	456, 588
HaeIII	GGCC	1 cut(s)	65
HapII	CCGG	5 cut(s)	99, 122, 137, 161, 789
HgaI	GACGC	4 cut(s)	186, 216, 233, 866
Hin1II	CATG	1 cut(s)	729
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HindIII	AAGCTT	1 cut(s)	676
HinfI	GANTC	6 cut(s)	79, 118, 263, 649, 871, 929
HpaII	CCGG	5 cut(s)	99, 122, 137, 161, 789
HphI	GGTGA	2 cut(s)	660, 880
Hpy166II	GTNNAC	2 cut(s)	340, 1012
Hpy188I	TCNGA	6 cut(s)	117, 144, 177, 324, 470, 853
Hpy188III	TCNNGA	5 cut(s)	137, 397, 481, 605, 806
Hpy8I	GTNNAC	2 cut(s)	340, 1012
Hpy99I	CGWCG	3 cut(s)	79, 194, 1007
HpyAV	CCTTC	2 cut(s)	368, 677
HpyCH4III	ACNGT	5 cut(s)	24, 194, 344, 763, 980
HpyCH4IV	ACGT	2 cut(s)	12, 277
HpyCH4V	TGCA	4 cut(s)	530, 542, 646, 818
HpyF10VI	GCNNNNNNNGC	3 cut(s)	71, 186, 224
HpyF3I	CTNAG	7 cut(s)	176, 261, 807, 852, 873, 933, 944
HpySE526I	ACGT	2 cut(s)	12, 277
Hsp92II	CATG	1 cut(s)	729
Kpn2I	TCCGGA	1 cut(s)	136
Ksp22I	TGATCA	1 cut(s)	489
Kzo9I	GATC	6 cut(s)	139, 282, 489, 830, 861, 1031
LmnI	GCTCC	3 cut(s)	6, 139, 272
Lsp1109I	GCAGC	1 cut(s)	58
LweI	GCATC	5 cut(s)	63, 421, 517, 551, 811
MaeI	CTAG	4 cut(s)	90, 329, 893, 906
MaeII	ACGT	2 cut(s)	12, 277
MaeIII	GTNAC	6 cut(s)	18, 718, 784, 868, 912, 998
MalI	GATC	6 cut(s)	141, 284, 491, 832, 863, 1033
MboI	GATC	6 cut(s)	139, 282, 489, 830, 861, 1031
MboII	GAAGA	4 cut(s)	320, 397, 542, 1009
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	2 cut(s)	277, 480
MlsI	TGGCCA	1 cut(s)	65
MluCI	AATT	8 cut(s)	151, 254, 312, 332, 535, 703, 714, 840
MluI	ACGCGT	1 cut(s)	225
MluNI	TGGCCA	1 cut(s)	65
MlyI	GAGTC	4 cut(s)	127, 272, 865, 938
MnlI	CCTC	6 cut(s)	95, 241, 476, 612, 847, 1000
Mox20I	TGGCCA	1 cut(s)	65
Mph1103I	ATGCAT	1 cut(s)	820
MroI	TCCGGA	1 cut(s)	136
MroXI	GAANNNNTTC	2 cut(s)	312, 404
MscI	TGGCCA	1 cut(s)	65
MseI	TTAA	4 cut(s)	45, 297, 570, 711
MslI	CAYNNNNRTG	2 cut(s)	59, 823
Msp20I	TGGCCA	1 cut(s)	65
MspI	CCGG	5 cut(s)	99, 122, 137, 161, 789
MspR9I	CCNGG	2 cut(s)	186, 866
Mva1269I	GAATGC	1 cut(s)	818
MvaI	CCWGG	2 cut(s)	186, 866
MvnI	CGCG	2 cut(s)	227, 860
MwoI	GCNNNNNNNGC	3 cut(s)	71, 186, 224
NdeII	GATC	6 cut(s)	139, 282, 489, 830, 861, 1031
NlaIII	CATG	1 cut(s)	729
NlaIV	GGNNCC	2 cut(s)	141, 583
NmuCI	GTSAC	4 cut(s)	718, 784, 868, 912
NsiI	ATGCAT	1 cut(s)	820
NspI	RCATGY	1 cut(s)	729
PctI	GAATGC	1 cut(s)	818
PdmI	GAANNNNTTC	2 cut(s)	312, 404
PfeI	GAWTC	2 cut(s)	79, 649
PinAI	ACCGGT	1 cut(s)	160
PkrI	GCNGC	3 cut(s)	73, 241, 883
PleI	GAGTC	4 cut(s)	126, 271, 865, 937
PmaCI	CACGTG	1 cut(s)	278
PmlI	CACGTG	1 cut(s)	278
PpsI	GAGTC	4 cut(s)	126, 271, 865, 937
Ppu21I	YACGTR	1 cut(s)	278
PshAI	GACNNNNGTC	1 cut(s)	928
Psp124BI	GAGCTC	1 cut(s)	480
Psp6I	CCWGG	2 cut(s)	184, 864
PspCI	CACGTG	1 cut(s)	278
PspEI	GGTNACC	1 cut(s)	18
PspGI	CCWGG	2 cut(s)	184, 864
PspN4I	GGNNCC	2 cut(s)	141, 583
PsrI	GAACNNNNNNTAC	2 cut(s)	137, 169
PsuI	RGATCY	1 cut(s)	139
RsaI	GTAC	1 cut(s)	628
RsaNI	GTAC	1 cut(s)	627
RseI	CAYNNNNRTG	2 cut(s)	59, 823
SacI	GAGCTC	1 cut(s)	480
SaqAI	TTAA	4 cut(s)	45, 297, 570, 711
SatI	GCNGC	3 cut(s)	72, 240, 882
Sau3AI	GATC	6 cut(s)	139, 282, 489, 830, 861, 1031
SchI	GAGTC	4 cut(s)	127, 272, 865, 938
ScrFI	CCNGG	2 cut(s)	186, 866
SduI	GDGCHC	2 cut(s)	277, 480
SfaNI	GCATC	5 cut(s)	63, 421, 517, 551, 811
SfcI	CTRYAG	1 cut(s)	219
SmiMI	CAYNNNNRTG	2 cut(s)	59, 823
Sse9I	AATT	8 cut(s)	151, 254, 312, 332, 535, 703, 714, 840
SsiI	CCGC	2 cut(s)	239, 882
SspI	AATATT	1 cut(s)	691
SspMI	CTAG	4 cut(s)	90, 329, 893, 906
SstI	GAGCTC	1 cut(s)	480
StyD4I	CCNGG	2 cut(s)	184, 864
StyI	CCWWGG	2 cut(s)	66, 577
TaaI	ACNGT	5 cut(s)	24, 194, 344, 763, 980
TaiI	ACGT	2 cut(s)	15, 280
TaqI	TCGA	1 cut(s)	822
TasI	AATT	8 cut(s)	151, 254, 312, 332, 535, 703, 714, 840
TauI	GCSGC	2 cut(s)	242, 884
TfiI	GAWTC	2 cut(s)	79, 649
Tru1I	TTAA	4 cut(s)	45, 297, 570, 711
Tru9I	TTAA	4 cut(s)	45, 297, 570, 711
TscAI	CASTG	4 cut(s)	789, 803, 904, 921
TseFI	GTSAC	4 cut(s)	718, 784, 868, 912
TseI	GCWGC	1 cut(s)	71
Tsp45I	GTSAC	4 cut(s)	718, 784, 868, 912
TspRI	CASTG	4 cut(s)	789, 803, 904, 921
XapI	RAATTY	3 cut(s)	312, 535, 840
XceI	RCATGY	1 cut(s)	729
XmnI	GAANNNNTTC	2 cut(s)	312, 404
XspI	CTAG	4 cut(s)	90, 329, 893, 906
Zsp2I	ATGCAT	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.