RchiOBHm_Chr5g0030171

Gamma-glutamyl

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Forward (+)
23918220 .. 23923312
5093 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30950

Sequence Viewer

Length: 1179 bp
ATGCCCTCCCCCTTTCTCGCTAATCCCACCTCTATCCCTCCTCCCAACTCCGCCGAGTCCACCTCCTCCGACGCCCCAAACGACGCCGTTCCCGCCTCCTCCTCCTCCTCCTCCTCGCGCTGCTCGGAAATGTGGAACTATCTCTGGATCCCCTTCCTGATTTCCCTCTCCAAGGAGCTCACCTCCGCCAAGGCGCAGTCCACGCCGACGATTCTGCTCCCGAGTCAACTCGCTGGCTCCGACTCGTCGCAGAGGTGTACGGCGCTCGACCCCAAGCTCAATTACCGCCCGGTGATCGGTATTCTCAGCCATCCCGGCGACGGCGCCTCCGGTCGGCTCAGTAATGCTACCGGTACTTCCTACATCGCCGCCTCCTACGTCAAGTTCGTTGAATCCGCCGGTGCTCGCGTTATTCCGCTCATCTACAACGAGCCTTCTGATGTTCTCTTCCAGAAGCTCAATCTGGTCAATGGCGTGCTTTTCACTGGAGGCTGGGCTAAAAGTGGGCGGTACTATGGAGTTGCTGAGAAAATATTTAAGATGATTTTAAAGAAGAATGATGCTGGTGACCATTTTCCATTATATGCCATCTGCTTGGGTTTCGAACTTCTAACAATGATCATCAGCAAGAACAAGAAAATTCTGGAGTCATTCAGTGCTGCAGATATGGCATCAACTTTACAATTTACCGAGACAAATATTGAGGGAACTGTGTTTCAAAGATTTCCGCCTGATTTGCTTAGAAAGTTGAGCACAGATTGTATTGTCATGCAAAACCACCATTATGGTATCTCACCAGAGACGTTGGAAGAGAGCCAAGATCTATCAAGTTTTTTTAAGATCTTGACAACCAGTACTGATAAAGATGATAAGGTCTATGTCTCCACAGTACATGCATACCACTATCCTGTGACTGCCTTCCAATGGCATCCGGAGAAAAATGCTTTTGAATGGGGGTTACCGATGATTCCACACTCAGAAGATGCCATTCACGTGACTCAGCACATAGCAAACTTTTTATCAGAATACACCGAGGCAAGGAAGTCATTAAACAGGCCACCTATTCAGGATGTCCTCGACAATCTCATCTACAATTACAGTCCAACATTTTGTGGGAAGGCAGGGAAGGGATACGATGAAGTTTACATCTTTAAACAACCTTCACTCGCACATTTGTAA

Protein Analysis

392

Amino Acids

43.3

Weight (kDa)

6.0

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C26 PF07722 97 - 312 1.5e-13 Peptidase C26
GATase PF00117 130 - 316 2.2e-10 Glutamine amidotransferase class-I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 323
AccBSI CCGCTC 1 cut(s) 418
AccII CGCG 2 cut(s) 118, 408
AccIII TCCGGA 1 cut(s) 931
AciI CCGC 9 cut(s) 51, 93, 186, 286, 369, 396, 416, 508, 728
AclWI GGATC 2 cut(s) 142, 155
AcsI RAATTY 1 cut(s) 639
AcvI CACGTG 1 cut(s) 994
AcyI GRCGYC 3 cut(s) 72, 84, 324
AfaI GTAC 5 cut(s) 259, 355, 512, 856, 891
AfiI CCNNNNNNNGG 6 cut(s) 172, 296, 320, 333, 924, 1038
AgeI ACCGGT 1 cut(s) 350
AgsI TTSAA 3 cut(s) 392, 719, 950
AluBI AGCT 3 cut(s) 178, 277, 457
AluI AGCT 3 cut(s) 178, 277, 457
Alw21I GWGCWC 3 cut(s) 180, 406, 755
Alw26I GTCTC 3 cut(s) 686, 794, 886
AlwI GGATC 2 cut(s) 142, 155
Ama87I CYCGRG 1 cut(s) 220
Aor13HI TCCGGA 1 cut(s) 931
AoxI GGCC 1 cut(s) 1055
ApeKI GCWGC 2 cut(s) 120, 659
ApoI RAATTY 1 cut(s) 639
AsiGI ACCGGT 1 cut(s) 350
AspLEI GCGC 4 cut(s) 120, 196, 265, 326
AsuC2I CCSGG 2 cut(s) 290, 315
AsuHPI GGTGA 4 cut(s) 172, 304, 578, 786
AsuII TTCGAA 1 cut(s) 603
AvaI CYCGRG 1 cut(s) 220
BamHI GGATCC 1 cut(s) 147
BanI GGYRCC 1 cut(s) 323
BanII GRGCYC 1 cut(s) 180
BbrPI CACGTG 1 cut(s) 994
Bbv12I GWGCWC 3 cut(s) 180, 406, 755
BbvI GCAGC 2 cut(s) 107, 646
BccI CCATC 2 cut(s) 318, 596
BceAI ACGGC 3 cut(s) 71, 276, 337
BcgI CGANNNNNNTGC 2 cut(s) 196, 230
BciVI GTATCC 1 cut(s) 1124
BclI TGATCA 1 cut(s) 618
BcnI CCSGG 2 cut(s) 290, 315
BcoDI GTCTC 3 cut(s) 686, 794, 886
BfmI CTRYAG 1 cut(s) 660
BfoI RGCGCY 2 cut(s) 266, 327
BfuI GTATCC 1 cut(s) 1124
BglI GCCNNNNNGGC 1 cut(s) 315
BglII AGATCT 2 cut(s) 820, 840
BisI GCNGC 3 cut(s) 121, 369, 660
BlsI GCNGC 3 cut(s) 122, 370, 661
BmcAI AGTACT 1 cut(s) 856
Bme1390I CCNGG 2 cut(s) 290, 315
BmeT110I CYCGRG 1 cut(s) 220
BmiI GGNNCC 3 cut(s) 149, 238, 325
BmrFI CCNGG 2 cut(s) 290, 315
BmsI GCATC 4 cut(s) 550, 680, 937, 973
BplI GAGNNNNNCTC 4 cut(s) 47, 79, 167, 199
BpmI CTGGAG 2 cut(s) 507, 665
Bpu14I TTCGAA 1 cut(s) 603
BpuMI CCSGG 2 cut(s) 290, 315
BsaAI YACGTR 1 cut(s) 994
BsaHI GRCGYC 3 cut(s) 72, 84, 324
BsaJI CCNNGG 3 cut(s) 171, 189, 1032
BsaWI WCCGGW 3 cut(s) 329, 350, 931
BsaXI ACNNNNNCTCC 2 cut(s) 311, 341
Bsc4I CCNNNNNNNGG 6 cut(s) 172, 296, 320, 333, 924, 1038
Bse118I RCCGGY 2 cut(s) 350, 398
Bse1I ACTGG 2 cut(s) 490, 852
BseAI TCCGGA 1 cut(s) 931
BseDI CCNNGG 3 cut(s) 171, 189, 1032
BseGI GGATG 3 cut(s) 310, 928, 1075
BseLI CCNNNNNNNGG 6 cut(s) 172, 296, 320, 333, 924, 1038
BseMII CTCAG 5 cut(s) 319, 352, 516, 990, 1013
BseNI ACTGG 2 cut(s) 490, 852
BseRI GAGGAG 8 cut(s) 30, 55, 88, 91, 94, 97, 100, 103
BseXI GCAGC 2 cut(s) 107, 646
BseYI CCCAGC 1 cut(s) 492
Bsh1236I CGCG 2 cut(s) 118, 408
Bsh1285I CGRYCG 1 cut(s) 334
BshFI GGCC 1 cut(s) 1057
BshNI GGYRCC 1 cut(s) 323
BshTI ACCGGT 1 cut(s) 350
BsiEI CGRYCG 1 cut(s) 334
BsiHKAI GWGCWC 3 cut(s) 180, 406, 755
BsiHKCI CYCGRG 1 cut(s) 220
BsiSI CCGG 6 cut(s) 290, 315, 330, 351, 399, 932
BslI CCNNNNNNNGG 6 cut(s) 172, 296, 320, 333, 924, 1038
BsmAI GTCTC 3 cut(s) 686, 794, 886
BsmBI CGTCTC 1 cut(s) 794
BsnI GGCC 1 cut(s) 1057
BsoBI CYCGRG 1 cut(s) 220
Bsp119I TTCGAA 1 cut(s) 603
Bsp1286I GDGCHC 3 cut(s) 180, 406, 755
Bsp13I TCCGGA 1 cut(s) 931
Bsp143I GATC 5 cut(s) 147, 294, 618, 820, 840
BspACI CCGC 9 cut(s) 51, 93, 186, 286, 369, 396, 416, 508, 728
BspANI GGCC 1 cut(s) 1057
BspCNI CTCAG 5 cut(s) 318, 351, 517, 989, 1012
BspEI TCCGGA 1 cut(s) 931
BspFNI CGCG 2 cut(s) 118, 408
BspLI GGNNCC 3 cut(s) 149, 238, 325
BspMAI CTGCAG 1 cut(s) 664
BspPI GGATC 2 cut(s) 142, 155
BspT104I TTCGAA 1 cut(s) 603
BspT107I GGYRCC 1 cut(s) 323
BsrBI CCGCTC 1 cut(s) 418
BsrFI RCCGGY 2 cut(s) 350, 398
BsrI ACTGG 2 cut(s) 490, 852
BssAI RCCGGY 2 cut(s) 350, 398
BssECI CCNNGG 3 cut(s) 171, 189, 1032
BssMI GATC 5 cut(s) 147, 294, 618, 820, 840
BssNI GRCGYC 3 cut(s) 72, 84, 324
BssT1I CCWWGG 2 cut(s) 171, 189
Bst4CI ACNGT 3 cut(s) 712, 889, 1100
Bst6I CTCTTC 2 cut(s) 452, 804
BstACI GRCGYC 3 cut(s) 72, 84, 324
BstBAI YACGTR 1 cut(s) 994
BstBI TTCGAA 1 cut(s) 603
BstC8I GCNNGC 3 cut(s) 235, 406, 476
BstDEI CTNAG 6 cut(s) 305, 338, 525, 740, 976, 999
BstEII GGTNACC 2 cut(s) 566, 957
BstENI CCTNNNNNAGG 1 cut(s) 170
BstF5I GGATG 3 cut(s) 310, 928, 1075
BstFNI CGCG 2 cut(s) 118, 408
BstH2I RGCGCY 2 cut(s) 266, 327
BstHHI GCGC 4 cut(s) 120, 196, 265, 326
BstKTI GATC 5 cut(s) 150, 297, 621, 823, 843
BstMAI GTCTC 3 cut(s) 686, 794, 886
BstMBI GATC 5 cut(s) 147, 294, 618, 820, 840
BstMCI CGRYCG 1 cut(s) 334
BstMWI GCNNNNNNNGC 5 cut(s) 92, 202, 315, 668, 736
BstNSI RCATGY 1 cut(s) 896
BstPI GGTNACC 2 cut(s) 566, 957
BstSCI CCNGG 2 cut(s) 288, 313
BstSFI CTRYAG 1 cut(s) 660
BstUI CGCG 2 cut(s) 118, 408
BstV1I GCAGC 2 cut(s) 107, 646
BstX2I RGATCY 3 cut(s) 147, 820, 840
BstXI CCANNNNNNTGG 2 cut(s) 595, 785
BstYI RGATCY 3 cut(s) 147, 820, 840
BsuI GTATCC 1 cut(s) 1124
BsuRI GGCC 1 cut(s) 1057
BtgZI GCGATG 1 cut(s) 349
BtsCI GGATG 3 cut(s) 310, 928, 1075
BtsIMutI CAGTG 2 cut(s) 483, 661
Cac8I GCNNGC 3 cut(s) 235, 406, 476
CfoI GCGC 4 cut(s) 120, 196, 265, 326
Cfr10I RCCGGY 2 cut(s) 350, 398
CseI GACGC 2 cut(s) 80, 92
Csp6I GTAC 5 cut(s) 258, 354, 511, 855, 890
CspAI ACCGGT 1 cut(s) 350
CviAII CATG 2 cut(s) 769, 893
CviQI GTAC 5 cut(s) 258, 354, 511, 855, 890
DdeI CTNAG 6 cut(s) 305, 338, 525, 740, 976, 999
DinI GGCGCC 1 cut(s) 325
DpnI GATC 5 cut(s) 149, 296, 620, 822, 842
DpnII GATC 5 cut(s) 147, 294, 618, 820, 840
DraI TTTAAA 2 cut(s) 549, 1153
Eam1104I CTCTTC 2 cut(s) 452, 804
EarI CTCTTC 2 cut(s) 452, 804
EciI GGCGGA 4 cut(s) 40, 175, 385, 717
Ecl136II GAGCTC 1 cut(s) 178
Eco130I CCWWGG 2 cut(s) 171, 189
Eco24I GRGCYC 1 cut(s) 180
Eco53kI GAGCTC 1 cut(s) 178
Eco72I CACGTG 1 cut(s) 994
Eco88I CYCGRG 1 cut(s) 220
Eco91I GGTNACC 2 cut(s) 566, 957
EcoICRI GAGCTC 1 cut(s) 178
EcoNI CCTNNNNNAGG 1 cut(s) 170
EcoO65I GGTNACC 2 cut(s) 566, 957
EcoT14I CCWWGG 2 cut(s) 171, 189
EcoT22I ATGCAT 1 cut(s) 898
EcoT38I GRGCYC 1 cut(s) 180
EgeI GGCGCC 1 cut(s) 325
EheI GGCGCC 1 cut(s) 325
ErhI CCWWGG 2 cut(s) 171, 189
Esp3I CGTCTC 1 cut(s) 794
FaeI CATG 2 cut(s) 772, 896
FatI CATG 2 cut(s) 768, 892
FauI CCCGC 1 cut(s) 100
FbaI TGATCA 1 cut(s) 618
Fnu4HI GCNGC 3 cut(s) 121, 369, 660
FokI GGATG 3 cut(s) 297, 915, 1082
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 3 cut(s) 121, 369, 660
GlaI GCGC 4 cut(s) 119, 195, 264, 325
GluI GCNGC 3 cut(s) 121, 369, 660
GsaI CCCAGC 1 cut(s) 496
GsuI CTGGAG 2 cut(s) 507, 665
HaeII RGCGCY 2 cut(s) 266, 327
HaeIII GGCC 1 cut(s) 1057
HapII CCGG 6 cut(s) 290, 315, 330, 351, 399, 932
HgaI GACGC 2 cut(s) 80, 92
HhaI GCGC 4 cut(s) 120, 196, 265, 326
Hin1I GRCGYC 3 cut(s) 72, 84, 324
Hin1II CATG 2 cut(s) 772, 896
Hin6I GCGC 4 cut(s) 118, 194, 263, 324
HinP1I GCGC 4 cut(s) 118, 194, 263, 324
HincII GTYRAC 1 cut(s) 227
HindII GTYRAC 1 cut(s) 227
HinfI GANTC 8 cut(s) 56, 211, 223, 242, 392, 647, 967, 997
HpaII CCGG 6 cut(s) 290, 315, 330, 351, 399, 932
HphI GGTGA 4 cut(s) 172, 304, 578, 786
Hpy166II GTNNAC 5 cut(s) 60, 201, 227, 258, 1144
Hpy188I TCNGA 6 cut(s) 70, 127, 241, 439, 979, 1024
Hpy188III TCNNGA 8 cut(s) 145, 157, 220, 451, 644, 844, 932, 1067
Hpy8I GTNNAC 5 cut(s) 60, 201, 227, 258, 1144
Hpy99I CGWCG 5 cut(s) 74, 86, 211, 250, 323
HpyAV CCTTC 6 cut(s) 163, 444, 928, 1111, 1120, 1170
HpyCH4III ACNGT 3 cut(s) 712, 889, 1100
HpyCH4IV ACGT 3 cut(s) 378, 803, 993
HpyCH4V TGCA 3 cut(s) 662, 772, 896
HpyF10VI GCNNNNNNNGC 5 cut(s) 92, 202, 315, 668, 736
HpyF3I CTNAG 6 cut(s) 305, 338, 525, 740, 976, 999
HpySE526I ACGT 3 cut(s) 378, 803, 993
Hsp92I GRCGYC 3 cut(s) 72, 84, 324
Hsp92II CATG 2 cut(s) 772, 896
HspAI GCGC 4 cut(s) 118, 194, 263, 324
KasI GGCGCC 1 cut(s) 323
Kpn2I TCCGGA 1 cut(s) 931
Ksp22I TGATCA 1 cut(s) 618
Kzo9I GATC 5 cut(s) 147, 294, 618, 820, 840
LmnI GCTCC 3 cut(s) 175, 222, 242
Lsp1109I GCAGC 2 cut(s) 107, 646
LweI GCATC 4 cut(s) 550, 680, 937, 973
MaeII ACGT 3 cut(s) 378, 803, 993
MaeIII GTNAC 4 cut(s) 566, 910, 957, 994
MalI GATC 5 cut(s) 149, 296, 620, 822, 842
MbiI CCGCTC 1 cut(s) 418
MboI GATC 5 cut(s) 147, 294, 618, 820, 840
MboII GAAGA 4 cut(s) 439, 565, 821, 992
MflI RGATCY 3 cut(s) 147, 820, 840
MhlI GDGCHC 3 cut(s) 180, 406, 755
MluCI AATT 4 cut(s) 280, 639, 683, 1093
Mly113I GGCGCC 1 cut(s) 324
MlyI GAGTC 5 cut(s) 65, 232, 236, 656, 991
MmeI TCCRAC 4 cut(s) 93, 264, 786, 1127
Mph1103I ATGCAT 1 cut(s) 898
MroI TCCGGA 1 cut(s) 931
MseI TTAA 5 cut(s) 537, 548, 837, 1049, 1152
MslI CAYNNNNRTG 2 cut(s) 783, 992
MspI CCGG 6 cut(s) 290, 315, 330, 351, 399, 932
MspR9I CCNGG 2 cut(s) 290, 315
MvnI CGCG 2 cut(s) 118, 408
MwoI GCNNNNNNNGC 5 cut(s) 92, 202, 315, 668, 736
NarI GGCGCC 1 cut(s) 324
NciI CCSGG 2 cut(s) 290, 315
NdeII GATC 5 cut(s) 147, 294, 618, 820, 840
NlaIII CATG 2 cut(s) 772, 896
NlaIV GGNNCC 3 cut(s) 149, 238, 325
NmeAIII GCCGAG 1 cut(s) 79
NmuCI GTSAC 3 cut(s) 566, 910, 994
NsiI ATGCAT 1 cut(s) 898
NspI RCATGY 1 cut(s) 896
NspV TTCGAA 1 cut(s) 603
PcsI WCGNNNNNNNCGW 3 cut(s) 78, 237, 384
PfeI GAWTC 3 cut(s) 211, 392, 967
PinAI ACCGGT 1 cut(s) 350
PkrI GCNGC 3 cut(s) 122, 370, 661
PleI GAGTC 5 cut(s) 64, 231, 236, 655, 991
PluTI GGCGCC 1 cut(s) 327
PmaCI CACGTG 1 cut(s) 994
PmlI CACGTG 1 cut(s) 994
PpsI GAGTC 5 cut(s) 64, 231, 236, 655, 991
Ppu21I YACGTR 1 cut(s) 994
Psp124BI GAGCTC 1 cut(s) 180
PspCI CACGTG 1 cut(s) 994
PspEI GGTNACC 2 cut(s) 566, 957
PspFI CCCAGC 1 cut(s) 492
PspN4I GGNNCC 3 cut(s) 149, 238, 325
PstI CTGCAG 1 cut(s) 664
PsuI RGATCY 3 cut(s) 147, 820, 840
RsaI GTAC 5 cut(s) 259, 355, 512, 856, 891
RsaNI GTAC 5 cut(s) 258, 354, 511, 855, 890
RseI CAYNNNNRTG 2 cut(s) 783, 992
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 5 cut(s) 537, 548, 837, 1049, 1152
SatI GCNGC 3 cut(s) 121, 369, 660
Sau3AI GATC 5 cut(s) 147, 294, 618, 820, 840
ScaI AGTACT 1 cut(s) 856
SchI GAGTC 5 cut(s) 65, 232, 236, 656, 991
ScrFI CCNGG 2 cut(s) 290, 315
SduI GDGCHC 3 cut(s) 180, 406, 755
SfaNI GCATC 4 cut(s) 550, 680, 937, 973
SfcI CTRYAG 1 cut(s) 660
SfoI GGCGCC 1 cut(s) 325
SfuI TTCGAA 1 cut(s) 603
SgrAI CRCCGGYG 1 cut(s) 398
SmiMI CAYNNNNRTG 2 cut(s) 783, 992
Sse9I AATT 4 cut(s) 280, 639, 683, 1093
SsiI CCGC 9 cut(s) 51, 93, 186, 286, 369, 396, 416, 508, 728
SspDI GGCGCC 1 cut(s) 323
SspI AATATT 2 cut(s) 534, 700
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 2 cut(s) 288, 313
StyI CCWWGG 2 cut(s) 171, 189
TaaI ACNGT 3 cut(s) 712, 889, 1100
TaiI ACGT 3 cut(s) 381, 806, 996
TaqI TCGA 3 cut(s) 267, 603, 1077
TasI AATT 4 cut(s) 280, 639, 683, 1093
TatI WGTACW 2 cut(s) 854, 889
TauI GCSGC 1 cut(s) 371
TfiI GAWTC 3 cut(s) 211, 392, 967
Tru1I TTAA 5 cut(s) 537, 548, 837, 1049, 1152
Tru9I TTAA 5 cut(s) 537, 548, 837, 1049, 1152
TscAI CASTG 2 cut(s) 490, 661
TseFI GTSAC 3 cut(s) 566, 910, 994
TseI GCWGC 2 cut(s) 120, 659
Tsp45I GTSAC 3 cut(s) 566, 910, 994
TspDTI ATGAA 1 cut(s) 1152
TspRI CASTG 2 cut(s) 490, 661
XagI CCTNNNNNAGG 1 cut(s) 170
XapI RAATTY 1 cut(s) 639
XceI RCATGY 1 cut(s) 896
ZrmI AGTACT 1 cut(s) 856
Zsp2I ATGCAT 1 cut(s) 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.