Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004728

Physical Location & Seq

Genomic Coordinates Reverse (-)

20007855 .. 20010866

Gene Structure 3012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g19410.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGATCATCAGCAAGAACAAGAACATTCTGGAGACATTCAGTGCAGTAGATGCGGCCTCAACTTTACAATTTACCGAAAACGCCATTATTGAAGGAACTGTTTTTCAAAGATTTCCTCCGGACTTGCTTAAGAAGTTGAGTACAGATTGTCTTGTAATGCAAAACCATAAATATGGTATCTCACCAGAGAGGCTTATGGAGAACGAGAATCTGTCGAGTTTCTTTAAGATCTTGACAACTTGTGCTGATGAAGATGATAAGGTCTATGTGTCCACAGTACACGCATACAACTATCCTGTGACTGCCTTCCAATGGCATCCAGAGAAAAATGCTTTCGAATGGGGCTTATCAATGATTCCGCACTCAGAGGATGCTATTCAAGTGACCCAGCACGCTGCAAACTTCTTGGTCAGTGAGGCAAGGAAATCATTGAACAGACCGCCTGTCCAGGAAGTCCTTGACAATCTCATCTACAACTACAGTCCCACTTTTTGTGGGAAGGCTGGGGGGGGATTCGACGAAGTTTACATCTTTACACAACCTTCACTCGCTCGTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006082 GO:0006508 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009987 GO:0016787 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034722 GO:0042558 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044281 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046900 GO:0051186 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00790 ko01523 map00790 map01523

Pfam Domains

Protein Families

Peptidase_C26

Protein Analysis

187

Amino Acids

21.03

Weight (kDa)

5.18

Isoelectric Point (pI)

36.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78660 AT1G78660 AT1G78660 AT1G78680 AT1G78680
fragaria_vesca	FvH4_3g18102 FvH4_3g18102 FvH4_3g18102 FvH4_3g18102 FvH4_3g18102 FvH4_3g18102 FvH4_3g18102
malus_domestica	MD00G1184200.v1.1 MD03G1244700.v1.1 MD03G1244800.v1.1
prunus_persica	Prupe.4G159900_v2.0.a1
pyrus_communis	pycom03g19410 pycom11g23430
rosa_chinensis	RchiOBHm_Chr5g0030171 RchiOBHm_Chr5g0030241 RchiOBHm_Chr5g0030431 RchiOBHm_Chr5g0030511
rosa_laevigata	RLG00000033221
rosa_multiflora	Rmu_sc0000280.1_g000003 Rmu_sc0015917.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049790
rosa_rugosa	Rorug05G0118100
rosa_samantha	Rh5AG210300 Rh5BG209500 Rh5DG213700
rosa_wichuraiana	Rw5G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	118
AciI	CCGC	3 cut(s)	53, 359, 440
AfaI	GTAC	2 cut(s)	142, 279
AfiI	CCNNNNNNNGG	1 cut(s)	312
AflII	CTTAAG	1 cut(s)	128
AgsI	TTSAA	4 cut(s)	92, 107, 380, 433
AhdI	GACNNNNNGTC	1 cut(s)	443
AjnI	CCWGG	1 cut(s)	447
Alw26I	GTCTC	1 cut(s)	26
Aor13HI	TCCGGA	1 cut(s)	118
AoxI	GGCC	1 cut(s)	54
ApeKI	GCWGC	1 cut(s)	395
AsuHPI	GGTGA	1 cut(s)	174
AsuII	TTCGAA	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	382
BciT130I	CCWGG	1 cut(s)	449
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	478
BfrI	CTTAAG	1 cut(s)	128
BglII	AGATCT	1 cut(s)	228
BisI	GCNGC	2 cut(s)	54, 396
BlsI	GCNGC	2 cut(s)	55, 397
Bme1390I	CCNGG	1 cut(s)	449
BmeRI	GACNNNNNGTC	1 cut(s)	443
BmrFI	CCNGG	1 cut(s)	449
BmsI	GCATC	3 cut(s)	40, 325, 361
BpmI	CTGGAG	1 cut(s)	50
Bpu14I	TTCGAA	1 cut(s)	336
BsaWI	WCCGGW	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
BseAI	TCCGGA	1 cut(s)	118
BseBI	CCWGG	1 cut(s)	449
BseGI	GGATG	2 cut(s)	316, 376
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	378
BseXI	GCAGC	1 cut(s)	382
BseYI	CCCAGC	2 cut(s)	387, 503
BsgI	GTGCAG	1 cut(s)	63
BshFI	GGCC	1 cut(s)	56
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	468
BsnI	GGCC	1 cut(s)	56
Bsp119I	TTCGAA	1 cut(s)	336
Bsp13I	TCCGGA	1 cut(s)	118
Bsp143I	GATC	2 cut(s)	3, 228
BspACI	CCGC	3 cut(s)	53, 359, 440
BspANI	GGCC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	377
BspEI	TCCGGA	1 cut(s)	118
BspT104I	TTCGAA	1 cut(s)	336
BspTI	CTTAAG	1 cut(s)	128
BssMI	GATC	2 cut(s)	3, 228
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	3 cut(s)	100, 277, 482
BstAFI	CTTAAG	1 cut(s)	128
BstAPI	GCANNNNNTGC	1 cut(s)	50
BstBI	TTCGAA	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	1 cut(s)	364
BstF5I	GGATG	2 cut(s)	316, 376
BstKTI	GATC	2 cut(s)	6, 231
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	2 cut(s)	3, 228
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	1 cut(s)	449
BstSCI	CCNGG	1 cut(s)	447
BstSFI	CTRYAG	1 cut(s)	478
BstV1I	GCAGC	1 cut(s)	382
BstX2I	RGATCY	1 cut(s)	228
BstXI	CCANNNNNNTGG	1 cut(s)	173
BstYI	RGATCY	1 cut(s)	228
BsuRI	GGCC	1 cut(s)	56
BtsCI	GGATG	2 cut(s)	316, 376
BtsIMutI	CAGTG	2 cut(s)	46, 418
Cac8I	GCNNGC	1 cut(s)	393
Csp6I	GTAC	2 cut(s)	141, 278
CviJI	RGCY	4 cut(s)	56, 193, 345, 503
CviKI_1	RGCY	4 cut(s)	56, 193, 345, 503
CviQI	GTAC	2 cut(s)	141, 278
DdeI	CTNAG	1 cut(s)	364
DpnI	GATC	2 cut(s)	5, 230
DpnII	GATC	2 cut(s)	3, 228
DriI	GACNNNNNGTC	1 cut(s)	443
Eam1105I	GACNNNNNGTC	1 cut(s)	443
EcoRII	CCWGG	1 cut(s)	447
FaiI	YATR	5 cut(s)	168, 174, 197, 267, 286
FaqI	GGGAC	1 cut(s)	468
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	2 cut(s)	54, 396
FokI	GGATG	2 cut(s)	303, 383
Fsp4HI	GCNGC	2 cut(s)	54, 396
GluI	GCNGC	2 cut(s)	54, 396
GsaI	CCCAGC	2 cut(s)	391, 507
GsuI	CTGGAG	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	1 cut(s)	119
HinfI	GANTC	3 cut(s)	208, 355, 513
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	1 cut(s)	174
Hpy166II	GTNNAC	3 cut(s)	273, 280, 526
Hpy188I	TCNGA	1 cut(s)	367
Hpy188III	TCNNGA	4 cut(s)	29, 119, 232, 320
Hpy8I	GTNNAC	3 cut(s)	273, 280, 526
Hpy99I	CGWCG	1 cut(s)	521
HpyAV	CCTTC	4 cut(s)	86, 316, 493, 552
HpyCH4III	ACNGT	3 cut(s)	100, 277, 482
HpyCH4V	TGCA	3 cut(s)	44, 160, 398
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	364
Kpn2I	TCCGGA	1 cut(s)	118
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	2 cut(s)	3, 228
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	3 cut(s)	40, 325, 361
MaeIII	GTNAC	2 cut(s)	298, 382
MalI	GATC	2 cut(s)	5, 230
MboI	GATC	2 cut(s)	3, 228
MboII	GAAGA	1 cut(s)	263
MflI	RGATCY	1 cut(s)	228
MluCI	AATT	1 cut(s)	68
MnlI	CCTC	5 cut(s)	67, 126, 183, 361, 409
MroI	TCCGGA	1 cut(s)	118
MseI	TTAA	2 cut(s)	129, 225
MslI	CAYNNNNRTG	1 cut(s)	171
MspCI	CTTAAG	1 cut(s)	128
MspI	CCGG	1 cut(s)	119
MspR9I	CCNGG	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	449
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	2 cut(s)	3, 228
NmuCI	GTSAC	2 cut(s)	298, 382
NspV	TTCGAA	1 cut(s)	336
PfeI	GAWTC	3 cut(s)	208, 355, 513
PfoI	TCCNGGA	1 cut(s)	447
PkrI	GCNGC	2 cut(s)	55, 397
Psp6I	CCWGG	1 cut(s)	447
PspFI	CCCAGC	2 cut(s)	387, 503
PspGI	CCWGG	1 cut(s)	447
PsuI	RGATCY	1 cut(s)	228
RsaI	GTAC	2 cut(s)	142, 279
RsaNI	GTAC	2 cut(s)	141, 278
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	2 cut(s)	129, 225
SatI	GCNGC	2 cut(s)	54, 396
Sau3AI	GATC	2 cut(s)	3, 228
ScrFI	CCNGG	1 cut(s)	449
SetI	ASST	2 cut(s)	264, 544
SfaNI	GCATC	3 cut(s)	40, 325, 361
SfcI	CTRYAG	1 cut(s)	478
SfuI	TTCGAA	1 cut(s)	336
SmiMI	CAYNNNNRTG	1 cut(s)	171
SmlI	CTYRAG	1 cut(s)	128
SmoI	CTYRAG	1 cut(s)	128
Sse9I	AATT	1 cut(s)	68
SsiI	CCGC	3 cut(s)	53, 359, 440
StyD4I	CCNGG	1 cut(s)	447
TaaI	ACNGT	3 cut(s)	100, 277, 482
TaqI	TCGA	3 cut(s)	215, 336, 516
TasI	AATT	1 cut(s)	68
TatI	WGTACW	2 cut(s)	140, 277
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	3 cut(s)	208, 355, 513
Tru1I	TTAA	2 cut(s)	129, 225
Tru9I	TTAA	2 cut(s)	129, 225
TscAI	CASTG	2 cut(s)	46, 418
TseFI	GTSAC	2 cut(s)	298, 382
TseI	GCWGC	1 cut(s)	395
Tsp45I	GTSAC	2 cut(s)	298, 382
TspDTI	ATGAA	1 cut(s)	264
TspRI	CASTG	2 cut(s)	46, 418
Vha464I	CTTAAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.