Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0004728

Physical Location & Seq

Genomic Coordinates Forward (+)

10421175 .. 10433660

Gene Structure 12486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0118100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4893 bp

ATGGGTTTTAAAGCCCTGGATTGGTATTGTCGCCCGGTGGCCAATGGGGTCTGGGCAAAAGCTGTGCTGAATGCGTTTGGTGCATACACTCCGTGCGCGGTTGAGTCTATAGTTGTCACCGTTTCTCAGTTGGCACTTCTAGCTCTGTGCATCTATCGGATATGGAGGACCAAGAACGACTTCAAAGCCAAAAGGTTCTGTTTGAAGTCCAAACTGTACAACTATATGCTGGCCTTATTGGCTGGTTACTGTACTGCCGAGCCTCTGTATAGATTGATCATGGGAATTTCAGTGATGAATTTAGATGGTCAGTTTGGCCTTGCGCCATTTGAGGTGGTTTCTCTGATCTTACAGTCTCTTTCTTGGTGCTCTATGCTGGTCATGATTGGTGTGGAAACCAAGATCTATATCTGTGAGTTTCGATGGTTTGTAAGATTTGGAGTAATTTATACTATAGTAGGGGATGCTGTGGTGTTCAATCTCATTCTTACAGTGAAGGACTTCTACAGCAGATCTGTATTTTATTTGTACATCAGTGAAGTTGTTGCTCAGGTTTTGTTTGGAATTCTTTTGGCTGTGTATGTTCCAAATTTGGTTGCATATCCTGGTTACACTCCAATCCAAACTGAATCAATTGATGATGCTGCATATGAAGAACTTCCTGGAGGAGAGCATATATGTCCTGAGAGGCAGGCCAACATATTGTCAAGAGTAATATTTTCATGGATGAATCCCCTTATGAAGCTAGGCTATCAAAGACCCCTCACGGAGAAAGATATTTGGAAATTGGATACTTGGGAACGAACTGAAACACTGAACAATAAGTTTCTAAAATGTTGGGCTGAGGAAATACGAAAGCCTAAACCATGGCTTTTAAGAGCATTGAACTCTAGCCTTGGGGGAAGGTTTTGGTGGGGAGGCTTTTGGAAGATTGGCAATGATCTTTCCCAGTTTACGGGGCCGCTTATTTTGAATCAGCTCTTACAGTCTATGCAACGAGGGGATCCAGCATGGATTGGTTACATCTATGCCTTCTCAATATTTCTTGGAGTGAGCGCTGGTGTGCTATGTGAAGCTCAGTATTTTCAAAATGTTATGCGTGTTGGTTACCGACTACGGTCAACATTGGTTGCTGCTGTATTTCGGAAATCTTTAAGGCTTACTCATGAAGCTCGAAAGAAGTTTCCATCCGGAAAGATAACCAACCTGATGACAACTGATGCTGAAGCACTTCAGCAAGTAACCCAGTCTCTTCACACTTTGTGGTCAGCACCATTTCGTATCACAATCTGCATGGTTCTCCTTTACCAAGAATTGGGTGTTGCTTCACTACTTGGTGCACTCATGTTAGTTCTTATGTTCCCCCTACAGACTTTAGTTATAAGCAAAATGCAGAAATTGTCTAAGGAGGGGTTGCAACGTACAGACAAGAGAATTGGCCTAATGAATGAAATTTTGGCTGCAATGGACACTGTGAAATGTTATGCATGGGAGAGTAGTTTTCAATCCAAGGTACAAAGTGTCCGAACTGAAGAATTGTACTGGTTTCGGAAAGCATCACTACTGGGAGCGTGTAATGGATTTCTACTAAATAGCGTCCCAGTTGTGGTCACTGTGATTTCCTTTGGATTGTTCACTTTGCTTGGGGGAAATCTCACACCTGCAAGGGCATTTACATCACTGTCTCTATTTGCTGTGCTTCGATTTCCCCTATTCATGCTTCCTAATATAATAACTCAGGCGGTTAATGCTAACGTATCCGTAAAGCGCCTGGAGGAATTACTTTTAGCTGAAGAGCGAGTTCTTCTGCCAAATCCTCCTCTTGATCCAGGACTACCGGCCATCTCAATTAAGAATGGATTCTTTTCTTGGGATTCAAAGGCAGAGAAGCCCACGTTGACAAATATCAATTTGGATATTCCTGTTGGGAGCTTGGTCGCAGTTGTTGGCAGTACTGGTGAAGGGAAGACATCACTTATATCTGCAATGCTAGGGGAGCTTCCTTCTGTAGCAAACACGAGTGTTGTAATGAGAGGAATGGTTGCTTATGTTCCACAAGTTTCATGGATTTTTAACGCAACCGTACGTGACAACATTTTATTTGGATCGTTCTTTGAGTCTTCAAGATATCAGAAGGCAATTGATGTGACTGCATTGCAGCATGACCTTGATTTATTGCCTGGTGGTGATCTGACTGAGATTGGTGAAAGAGGAGTGAATATTAGTGGTGGACAGAAGCAAAGAGTCTCTATGGCTAGGGCTGTCTACTCCAATTCTGATGTATATGTTTTTGATGATCCCTTGAGTGCCCTTGATGCTCATGTGGCTCGACAGGTTTTTGATAAATGCATCAAGGGAGAGTTAAGAGGGAAAACCAGAGTCCTTGTTACCAATCAGCTACATTTTCTTTCACAAGTTGATAGAATCATTCTAGTTCATGATGGAATGGTGAAAGAGGAGGGAACATTTGAGGAGCTTTCCAACAATGGCGTGATGTTCCAAAGGCTAATGGAAAATGCGGGAAAGATGGAAGAGTATGGGGAAGAGAAAGAAGATGATGAAACTGTTGATCAGAATGGCGAAACAATTGATCATAATGCCTCTTTGAAACCTATTGTCAACGGGGTTGTCCATGATATGTCAAAAACTGCAAGCCATGCAAGTAAACAAAAAGAAGGAAAATCTGTTCTTATTAAACAAGAAGAAAGGGAAACAGGAGTTGTCAGCTTGAAGGTGTTGGCGAGGTATAAGAATGCGTTAGGAGGCTTGTGGGTGGTTCTCATACTCTTTACATGCTATATTTCAACTGAGGTTCTACGAGTTTCAAGTAGCACGTGGTTGAGCCATTGGACTAATCAAGGCATAACAGGGAAATATGACCCTGGTTTCTACAATCTGATATACGCACTTCTATCTTTTGGTCAGGTTATGGTGACACTGGCAAACTCTTATTGGTTGATTCTTTCTAGTCTTTATGCTGCGAGGAGGTTGCATGATGCCATGCTTGGGTCCATATTAAGAGCTCCTATGGTCTTTTTCCAGACCAATCCCCTTGGCAGGATCATTAACAGATTTGCAAAGGATCTTGGAGATATTGATCGGGGTGTGGCTCTATTTGTAAACATGTTTCTTGGTCAAGTTTCTCAGCTCTTTTCTACTTTCATCTTAATAGGGATCGTGAGCACTATGTCCTTGTGGGCCATTCTGCCTCTTTTGGTTTTGTTTTATGCAGCCTATCTATACTATCAGAGCATGGCCCGTGAGGTGAAGCGCTTGGACTCCATCAGCAGATCCCCTGTTTATGCCCAATTTGGAGAAGCATTGAATGGTCTATCATCGATTCGTGCATATAAGGCTTATGATCGGATGGCAGAGATTAATGGAAAGTCTGTGGACAACAGTATCAGATTCACGCTGGTGAATATAAGTGCAAATCGTTGGCTTGCAATCCGTTTGGAAGCATTGGGAGGTATCATGATATGGTTTACAGCTACCTTTGCTGTTATGCAGAATGGAAGGGCAGAGAACCAGCAGGAGTTTGCATCCACTATGGGTCTCCTTCTTAGTTATGCTCTTAATATTACAAGTCTAATGACTGGTGTACTGAGACTTGCAAGTCTGGCTGAGAATAGCTTAAATGCTGTTGAGCGGGTTGGCACATATATAGAGTTGCCTTCAGAAGCTCCTGCTGTAATTGAGAGCAACCGCCCCCCTCCAGGATGGCCTTCATCTGGATCCATTAAATTTGAAGATGTTGTTCTGCGTTATAGACCTGAACTTCCTCCAGTTTTGCATGAGTTGTCTTTCACAATTTCTCCAACCGACAAGGTCGGAATAGTTGGAAGGACTGGGGCAGGGAAGTCCAGCATGCTAAATGCTTTATTTCGAATTGTTGAATTGGAGAGAGGAAGAATTTTGATTGATGGTTGTGATATTGGTAAGTTTGGACTCGAAGATCTTCGGAAAGTTCTTGGTATTATTCCACAGGCACCCGTTCTTTTTTCAGGAACTGTGAGATTTAATCTCGATCCATTTCAAGAACATAATGATGCTGACCTATGGGAGGCTTTAGAGAGGGCACATTTGAAGGATGCCATCAGGAGGAATTCTTTGGGTTTAGATGCCGAGGTCTCGGAGTCAGGAGAGAATTTCAGTGTTGGACAGCGGCAACTATTGAGTCTTGCTCGAGCACTCTTGCGAAGATCAAAAATACTTGTTCTTGACGAAGCAACTGCAGCTGTTGATGTCAGAACTGATGCTCTTATTCAGAAAACTATTCGTGAAGAATTTAGATCATGTACGATGCTCATTATTGCTCATCGTCTAAATACCATTATTGACTGTGACCGAATCCTTCTGCTTGATAATGGCCGGGTTCGAGAATATGATACTCCAGAGCACCTGCTGTCAAATGAAAGAAGCGCTTTCTCTAAAATGGTGCAGAGCACAGGCGCAGCAAATGCCCAATATTTACGAAGCTTGGTCCTTGGGGAGGGAGGAGAAAACAGAAGAGAGGACAACAGCCAACTAGATGGACAGAGGAGATGGCTGGCCTCTTCTCGCTGGGCTGCAGCTGCCCAGTTTGCCGTTGCTGTTAGCCTTACTTCATCCCAGAATGACCTTCAAAGATTGGAGTTTGAAGACCAGGACAGTATCCTCTATAAGACGAAGGATGCGGTGATAACTCTCCGGGGAGTCTTGGAAGGGAAGCATGACAAACTTATTGAAGAGTCACTTGATCAATACCAGATCTCTAGAGATGGGTGGTGGTCATCTCTCTACCGAATGGTTGAAGGTCTTGCTGTAATGAGCAGGCTGTCGAGGAGTAGGCTTCACCAGTCAGAAATTGGTTTCGAAGACAGATCGATCAACTGGGACCATGCTGACATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006082 GO:0006508 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009987 GO:0016787 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034722 GO:0042558 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044281 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046900 GO:0051186 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00790 ko01523 map00790 map01523

Pfam Domains

Protein Families

Peptidase_C26

Protein Analysis

1630

Amino Acids

182.63

Weight (kDa)

7.92

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_membrane	PF00664	307 - 571	2.9e-35	ABC transporter transmembrane region
ABC_tran	PF00005	633 - 768	2.3e-16	ABC transporter
ABC_membrane	PF00664	927 - 1170	3.3e-34	ABC transporter transmembrane region
ABC_tran	PF00005	1264 - 1412	2e-26	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78660 AT1G78660 AT1G78660 AT1G78680 AT1G78680
fragaria_vesca	FvH4_3g18102 FvH4_3g18102 FvH4_3g18102 FvH4_3g18102 FvH4_3g18102 FvH4_3g18102 FvH4_3g18102
malus_domestica	MD00G1184200.v1.1 MD03G1244700.v1.1 MD03G1244800.v1.1
prunus_persica	Prupe.4G159900_v2.0.a1
pyrus_communis	pycom03g19410 pycom11g23430
rosa_chinensis	RchiOBHm_Chr5g0030171 RchiOBHm_Chr5g0030241 RchiOBHm_Chr5g0030431 RchiOBHm_Chr5g0030511
rosa_laevigata	RLG00000033221
rosa_multiflora	Rmu_sc0000280.1_g000003 Rmu_sc0015917.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049790
rosa_rugosa	Rorug05G0118100
rosa_samantha	Rh5AG210300 Rh5BG209500 Rh5DG213700
rosa_wichuraiana	Rw5G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1382
AarI	CACCTGC	2 cut(s)	1669, 4410
AasI	GACNNNNNNGTC	1 cut(s)	3615
Acc36I	ACCTGC	2 cut(s)	1669, 4410
AccB1I	GGYRCC	1 cut(s)	3988
AccB7I	CCANNNNNTGG	1 cut(s)	1315
AccBSI	CCGCTC	1 cut(s)	3649
AccI	GTMKAC	1 cut(s)	2265
AccII	CGCG	1 cut(s)	98
AccIII	TCCGGA	1 cut(s)	1190
AciI	CCGC	8 cut(s)	98, 962, 1742, 2519, 3649, 3706, 4165, 4676
AcoI	YGGCCR	3 cut(s)	39, 1839, 4369
AcuI	CTGAAG	5 cut(s)	1217, 1245, 1551, 1812, 3660
AcvI	CACGTG	1 cut(s)	2835
AdeI	CACNNNGTG	2 cut(s)	93, 1263
AfeI	AGCGCT	3 cut(s)	1057, 3272, 4423
AflIII	ACRYGT	2 cut(s)	3123, 4887
AjnI	CCWGG	9 cut(s)	15, 604, 661, 1770, 1828, 2179, 2881, 3715, 4644
AjuI	GAANNNNNNNTTGG	4 cut(s)	164, 196, 1439, 1471
AleI	CACNNNNGTG	1 cut(s)	3416
AloI	GAACNNNNNNTCC	2 cut(s)	2670, 2702
Alw21I	GWGCWC	7 cut(s)	371, 1342, 3025, 3185, 4192, 4401, 4448
Alw26I	GTCTC	7 cut(s)	360, 1254, 1689, 2251, 3560, 3601, 4135
Alw44I	GTGCAC	1 cut(s)	1338
AlwNI	CAGNNNCTG	1 cut(s)	4010
Ama87I	CYCGRG	1 cut(s)	4185
Aor13HI	TCCGGA	1 cut(s)	1190
Aor51HI	AGCGCT	3 cut(s)	1057, 3272, 4423
ApaLI	GTGCAC	1 cut(s)	1338
AseI	ATTAAT	1 cut(s)	3378
Asp700I	GAANNNNTTC	6 cut(s)	179, 500, 657, 1230, 1859, 3957
AspLEI	GCGC	7 cut(s)	98, 325, 1058, 1770, 3273, 4424, 4454
AspS9I	GGNCC	7 cut(s)	168, 959, 3009, 3198, 3256, 4483, 4876
AsuC2I	CCSGG	3 cut(s)	35, 4373, 4691
AsuII	TTCGAA	2 cut(s)	3886, 4854
AvaI	CYCGRG	1 cut(s)	4185
AvaII	GGWCC	4 cut(s)	168, 3009, 4483, 4876
BaeGI	GKGCMC	3 cut(s)	1342, 2311, 4081
BaeI	ACNNNNGTAYC	2 cut(s)	3385, 3418
BalI	TGGCCA	1 cut(s)	41
BamHI	GGATCC	2 cut(s)	1003, 3734
BanI	GGYRCC	1 cut(s)	3988
BanII	GRGCYC	1 cut(s)	3025
BarI	GAAGNNNNNNTAC	2 cut(s)	488, 520
BauI	CACGAG	1 cut(s)	2017
BbrPI	CACGTG	1 cut(s)	2835
BbsI	GAAGAC	4 cut(s)	1973, 2112, 4647, 4863
Bbv12I	GWGCWC	7 cut(s)	371, 1342, 3025, 3185, 4192, 4401, 4448
BbvCI	CCTCAGC	1 cut(s)	843
BceAI	ACGGC	1 cut(s)	4571
BcgI	CGANNNNNNTGC	4 cut(s)	2971, 3005, 4214, 4248
BciT130I	CCWGG	9 cut(s)	17, 606, 663, 1772, 1830, 2181, 2883, 3717, 4646
BciVI	GTATCC	3 cut(s)	784, 1768, 4664
BclI	TGATCA	4 cut(s)	276, 2569, 2590, 4738
BcnI	CCSGG	3 cut(s)	35, 4373, 4691
BcoDI	GTCTC	7 cut(s)	360, 1254, 1689, 2251, 3560, 3601, 4135
BfaI	CTAG	9 cut(s)	140, 746, 891, 1991, 2256, 2432, 2967, 4529, 4755
BfmI	CTRYAG	7 cut(s)	108, 453, 505, 1367, 2007, 4233, 4569
BfoI	RGCGCY	4 cut(s)	1059, 1771, 3274, 4425
BfuAI	ACCTGC	2 cut(s)	1669, 4410
BfuI	GTATCC	3 cut(s)	784, 1768, 4664
BglI	GCCNNNNNGGC	1 cut(s)	239
BglII	AGATCT	4 cut(s)	402, 512, 3955, 4749
BmcAI	AGTACT	1 cut(s)	1954
Bme18I	GGWCC	4 cut(s)	168, 3009, 4483, 4876
BmeT110I	CYCGRG	1 cut(s)	4185
BmgT120I	GGNCC	7 cut(s)	168, 959, 3009, 3198, 3256, 4483, 4876
BmiI	GGNNCC	6 cut(s)	960, 1005, 3010, 3736, 3990, 4877
BmrI	ACTGGG	7 cut(s)	943, 1240, 1574, 1595, 3858, 4573, 4882
BmuI	ACTGGG	7 cut(s)	943, 1240, 1574, 1595, 3858, 4573, 4882
BoxI	GACNNNNGTC	1 cut(s)	1117
BpiI	GAAGAC	4 cut(s)	1973, 2112, 4647, 4863
BplI	GAGNNNNNCTC	2 cut(s)	4168, 4200
BpmI	CTGGAG	5 cut(s)	684, 1793, 3699, 3768, 4377
Bpu10I	CCTNAGC	2 cut(s)	549, 843
Bpu14I	TTCGAA	2 cut(s)	3886, 4854
BpuEI	CTTGAG	1 cut(s)	2323
BpuMI	CCSGG	3 cut(s)	35, 4373, 4691
Bsa29I	ATCGAT	2 cut(s)	3338, 4865
BsaAI	YACGTR	2 cut(s)	2087, 2835
BsaBI	GATNNNNATC	2 cut(s)	407, 3096
BsaI	GGTCTC	2 cut(s)	3560, 4135
BsaJI	CCNNGG	9 cut(s)	15, 866, 895, 1509, 2881, 3052, 4125, 4486, 4690
BsaWI	WCCGGW	1 cut(s)	1190
BsaXI	ACNNNNNCTCC	2 cut(s)	3799, 3829
Bse118I	RCCGGY	1 cut(s)	1837
Bse3DI	GCAATG	4 cut(s)	943, 1470, 1992, 2153
Bse8I	GATNNNNATC	2 cut(s)	407, 3096
BseAI	TCCGGA	1 cut(s)	1190
BseBI	CCWGG	9 cut(s)	17, 606, 663, 1772, 1830, 2181, 2883, 3717, 4646
BseCI	ATCGAT	2 cut(s)	3338, 4865
BseDI	CCNNGG	9 cut(s)	15, 866, 895, 1509, 2881, 3052, 4125, 4486, 4690
BseGI	GGATG	9 cut(s)	469, 732, 1187, 3372, 3542, 3725, 4096, 4607, 4678
BseJI	GATNNNNATC	2 cut(s)	407, 3096
BseMI	GCAATG	4 cut(s)	943, 1470, 1992, 2153
BseRI	GAGGAG	9 cut(s)	681, 1809, 2226, 2471, 2486, 2998, 4512, 4555, 4837
BseSI	GKGCMC	3 cut(s)	1342, 2311, 4081
BseYI	CCCAGC	1 cut(s)	4563
BsgI	GTGCAG	1 cut(s)	4460
Bsh1236I	CGCG	1 cut(s)	98
BshNI	GGYRCC	1 cut(s)	3988
BshVI	ATCGAT	2 cut(s)	3338, 4865
BsiHKAI	GWGCWC	7 cut(s)	371, 1342, 3025, 3185, 4192, 4401, 4448
BsiHKCI	CYCGRG	1 cut(s)	4185
BsiSI	CCGG	5 cut(s)	35, 1191, 1838, 4372, 4690
BsiWI	CGTACG	1 cut(s)	2083
BslFI	GGGAC	2 cut(s)	1583, 4889
BsmAI	GTCTC	7 cut(s)	360, 1254, 1689, 2251, 3560, 3601, 4135
BsmFI	GGGAC	2 cut(s)	1583, 4889
BsmI	GAATGC	2 cut(s)	76, 2758
Bso31I	GGTCTC	2 cut(s)	3560, 4135
BsoBI	CYCGRG	1 cut(s)	4185
Bsp119I	TTCGAA	2 cut(s)	3886, 4854
Bsp1286I	GDGCHC	9 cut(s)	371, 1342, 2311, 3025, 3185, 4081, 4192, 4401, 4448
Bsp13I	TCCGGA	1 cut(s)	1190
Bsp1407I	TGTACA	2 cut(s)	216, 528
Bsp19I	CCATGG	1 cut(s)	866
BspACI	CCGC	8 cut(s)	98, 962, 1742, 2519, 3649, 3706, 4165, 4676
BspDI	ATCGAT	2 cut(s)	3338, 4865
BspEI	TCCGGA	1 cut(s)	1190
BspFNI	CGCG	1 cut(s)	98
BspHI	TCATGA	4 cut(s)	381, 1165, 2437, 3474
BspLI	GGNNCC	6 cut(s)	960, 1005, 3010, 3736, 3990, 4877
BspMAI	CTGCAG	2 cut(s)	4237, 4573
BspMI	ACCTGC	2 cut(s)	1669, 4410
BspQI	GCTCTTC	1 cut(s)	1788
BspT104I	TTCGAA	2 cut(s)	3886, 4854
BspT107I	GGYRCC	1 cut(s)	3988
BspTNI	GGTCTC	2 cut(s)	3560, 4135
BsrBI	CCGCTC	1 cut(s)	3649
BsrDI	GCAATG	4 cut(s)	943, 1470, 1992, 2153
BsrFI	RCCGGY	1 cut(s)	1837
BsrGI	TGTACA	2 cut(s)	216, 528
BssAI	RCCGGY	1 cut(s)	1837
BssECI	CCNNGG	9 cut(s)	15, 866, 895, 1509, 2881, 3052, 4125, 4486, 4690
BssSI	CACGAG	1 cut(s)	2017
BssT1I	CCWWGG	5 cut(s)	866, 895, 1509, 3052, 4486
Bst2BI	CACGAG	1 cut(s)	2017
Bst2UI	CCWGG	9 cut(s)	17, 606, 663, 1772, 1830, 2181, 2883, 3717, 4646
Bst6I	CTCTTC	7 cut(s)	1257, 1788, 2526, 2538, 4504, 4561, 4722
BstAPI	GCANNNNNTGC	2 cut(s)	2657, 4460
BstAUI	TGTACA	2 cut(s)	216, 528
BstBAI	YACGTR	2 cut(s)	2087, 2835
BstBI	TTCGAA	2 cut(s)	3886, 4854
BstC8I	GCNNGC	7 cut(s)	231, 693, 2653, 3444, 3869, 4551, 4814
BstDSI	CCRYGG	1 cut(s)	866
BstEII	GGTNACC	1 cut(s)	1106
BstENI	CCTNNNNNAGG	2 cut(s)	4061, 4490
BstF5I	GGATG	9 cut(s)	469, 732, 1187, 3372, 3542, 3725, 4096, 4607, 4678
BstFNI	CGCG	1 cut(s)	98
BstH2I	RGCGCY	4 cut(s)	1059, 1771, 3274, 4425
BstHHI	GCGC	7 cut(s)	98, 325, 1058, 1770, 3273, 4424, 4454
BstMAI	GTCTC	7 cut(s)	360, 1254, 1689, 2251, 3560, 3601, 4135
BstNI	CCWGG	9 cut(s)	17, 606, 663, 1772, 1830, 2181, 2883, 3717, 4646
BstNSI	RCATGY	4 cut(s)	2796, 3127, 3871, 4891
BstPAI	GACNNNNGTC	1 cut(s)	1117
BstPI	GGTNACC	1 cut(s)	1106
BstSFI	CTRYAG	7 cut(s)	108, 453, 505, 1367, 2007, 4233, 4569
BstSLI	GKGCMC	3 cut(s)	1342, 2311, 4081
BstUI	CGCG	1 cut(s)	98
BstV2I	GAAGAC	4 cut(s)	1973, 2112, 4647, 4863
BstX2I	RGATCY	8 cut(s)	402, 512, 1003, 3082, 3290, 3734, 3955, 4749
BstXI	CCANNNNNNTGG	1 cut(s)	4532
BstYI	RGATCY	8 cut(s)	402, 512, 1003, 3082, 3290, 3734, 3955, 4749
Bsu15I	ATCGAT	2 cut(s)	3338, 4865
BsuI	GTATCC	3 cut(s)	784, 1768, 4664
BsuTUI	ATCGAT	2 cut(s)	3338, 4865
BtgI	CCRYGG	1 cut(s)	866
BtsCI	GGATG	9 cut(s)	469, 732, 1187, 3372, 3542, 3725, 4096, 4607, 4678
BtsIMutI	CAGTG	9 cut(s)	297, 498, 541, 812, 1470, 1611, 1679, 2936, 4159
BveI	ACCTGC	2 cut(s)	1669, 4410
Cac8I	GCNNGC	7 cut(s)	231, 693, 2653, 3444, 3869, 4551, 4814
CaiI	CAGNNNCTG	1 cut(s)	4010
CciI	TCATGA	4 cut(s)	381, 1165, 2437, 3474
CfoI	GCGC	7 cut(s)	98, 325, 1058, 1770, 3273, 4424, 4454
Cfr10I	RCCGGY	1 cut(s)	1837
Cfr13I	GGNCC	7 cut(s)	168, 959, 3009, 3198, 3256, 4483, 4876
ClaI	ATCGAT	2 cut(s)	3338, 4865
CseI	GACGC	1 cut(s)	1585
DraI	TTTAAA	1 cut(s)	10
DraIII	CACNNNGTG	2 cut(s)	93, 1263
DrdI	GACNNNNNNGTC	1 cut(s)	3615
DseDI	GACNNNNNNGTC	1 cut(s)	3615
EaeI	YGGCCR	3 cut(s)	39, 1839, 4369
Eam1104I	CTCTTC	7 cut(s)	1257, 1788, 2526, 2538, 4504, 4561, 4722
EarI	CTCTTC	7 cut(s)	1257, 1788, 2526, 2538, 4504, 4561, 4722
Ecl136II	GAGCTC	1 cut(s)	3023
Eco130I	CCWWGG	5 cut(s)	866, 895, 1509, 3052, 4486
Eco24I	GRGCYC	1 cut(s)	3025
Eco31I	GGTCTC	2 cut(s)	3560, 4135
Eco32I	GATATC	1 cut(s)	2129
Eco47I	GGWCC	4 cut(s)	168, 3009, 4483, 4876
Eco47III	AGCGCT	3 cut(s)	1057, 3272, 4423
Eco53kI	GAGCTC	1 cut(s)	3023
Eco57I	CTGAAG	5 cut(s)	1217, 1245, 1551, 1812, 3660
Eco72I	CACGTG	1 cut(s)	2835
Eco88I	CYCGRG	1 cut(s)	4185
Eco91I	GGTNACC	1 cut(s)	1106
EcoICRI	GAGCTC	1 cut(s)	3023
EcoNI	CCTNNNNNAGG	2 cut(s)	4061, 4490
EcoO65I	GGTNACC	1 cut(s)	1106
EcoRI	GAATTC	2 cut(s)	564, 4105
EcoRII	CCWGG	9 cut(s)	15, 604, 661, 1770, 1828, 2179, 2881, 3715, 4644
EcoRV	GATATC	1 cut(s)	2129
EcoT14I	CCWWGG	5 cut(s)	866, 895, 1509, 3052, 4486
EcoT22I	ATGCAT	2 cut(s)	1489, 2351
EcoT38I	GRGCYC	1 cut(s)	3025
ErhI	CCWWGG	5 cut(s)	866, 895, 1509, 3052, 4486
FalI	AAGNNNNNCTT	6 cut(s)	164, 196, 4408, 4440, 4719, 4751
FaqI	GGGAC	2 cut(s)	1583, 4889
FauI	CCCGC	2 cut(s)	2512, 3642
FauNDI	CATATG	1 cut(s)	649
FbaI	TGATCA	4 cut(s)	276, 2569, 2590, 4738
FblI	GTMKAC	1 cut(s)	2265
FokI	GGATG	9 cut(s)	476, 739, 1174, 3379, 3529, 3732, 4103, 4594, 4685
FriOI	GRGCYC	1 cut(s)	3025
FspBI	CTAG	9 cut(s)	140, 746, 891, 1991, 2256, 2432, 2967, 4529, 4755
GlaI	GCGC	7 cut(s)	97, 324, 1057, 1769, 3272, 4423, 4453
GsaI	CCCAGC	1 cut(s)	4567
GsuI	CTGGAG	5 cut(s)	684, 1793, 3699, 3768, 4377
HaeII	RGCGCY	4 cut(s)	1059, 1771, 3274, 4425
HapII	CCGG	5 cut(s)	35, 1191, 1838, 4372, 4690
HgaI	GACGC	1 cut(s)	1585
HhaI	GCGC	7 cut(s)	98, 325, 1058, 1770, 3273, 4424, 4454
Hin6I	GCGC	7 cut(s)	96, 323, 1056, 1768, 3271, 4422, 4452
HinP1I	GCGC	7 cut(s)	96, 323, 1056, 1768, 3271, 4422, 4452
HincII	GTYRAC	3 cut(s)	1122, 1899, 2620
HindII	GTYRAC	3 cut(s)	1122, 1899, 2620
HindIII	AAGCTT	1 cut(s)	4477
HpaII	CCGG	5 cut(s)	35, 1191, 1838, 4372, 4690
HpyCH4IV	ACGT	5 cut(s)	1420, 1755, 1895, 2086, 2834
HpySE526I	ACGT	5 cut(s)	1420, 1755, 1895, 2086, 2834
HspAI	GCGC	7 cut(s)	96, 323, 1056, 1768, 3271, 4422, 4452
Kpn2I	TCCGGA	1 cut(s)	1190
Ksp22I	TGATCA	4 cut(s)	276, 2569, 2590, 4738
LguI	GCTCTTC	1 cut(s)	1788
LmnI	GCTCC	6 cut(s)	1568, 1929, 1996, 2473, 3028, 3688
MaeI	CTAG	9 cut(s)	140, 746, 891, 1991, 2256, 2432, 2967, 4529, 4755
MaeII	ACGT	5 cut(s)	1420, 1755, 1895, 2086, 2834
MbiI	CCGCTC	1 cut(s)	3649
MfeI	CAATTG	3 cut(s)	633, 2139, 2586
MflI	RGATCY	8 cut(s)	402, 512, 1003, 3082, 3290, 3734, 3955, 4749
MhlI	GDGCHC	9 cut(s)	371, 1342, 2311, 3025, 3185, 4081, 4192, 4401, 4448
MlsI	TGGCCA	1 cut(s)	41
MluNI	TGGCCA	1 cut(s)	41
MmeI	TCCRAC	5 cut(s)	2505, 3811, 3820, 3842, 4138
Mox20I	TGGCCA	1 cut(s)	41
Mph1103I	ATGCAT	2 cut(s)	1489, 2351
MroI	TCCGGA	1 cut(s)	1190
MroXI	GAANNNNTTC	6 cut(s)	179, 500, 657, 1230, 1859, 3957
MscI	TGGCCA	1 cut(s)	41
MslI	CAYNNNNRTG	2 cut(s)	3416, 4047
Msp20I	TGGCCA	1 cut(s)	41
MspA1I	CMGCKG	3 cut(s)	4165, 4238, 4574
MspI	CCGG	5 cut(s)	35, 1191, 1838, 4372, 4690
MunI	CAATTG	3 cut(s)	633, 2139, 2586
Mva1269I	GAATGC	2 cut(s)	76, 2758
MvaI	CCWGG	9 cut(s)	17, 606, 663, 1772, 1830, 2181, 2883, 3717, 4646
MvnI	CGCG	1 cut(s)	98
NciI	CCSGG	3 cut(s)	35, 4373, 4691
NcoI	CCATGG	1 cut(s)	866
NdeI	CATATG	1 cut(s)	649
NlaIV	GGNNCC	6 cut(s)	960, 1005, 3010, 3736, 3990, 4877
NmeAIII	GCCGAG	2 cut(s)	283, 4150
NmuCI	GTSAC	7 cut(s)	115, 1609, 2087, 2146, 2932, 4343, 4731
NsiI	ATGCAT	2 cut(s)	1489, 2351
NspI	RCATGY	4 cut(s)	2796, 3127, 3871, 4891
NspV	TTCGAA	2 cut(s)	3886, 4854
OliI	CACNNNNGTG	1 cut(s)	3416
PaeI	GCATGC	1 cut(s)	3871
PaeR7I	CTCGAG	1 cut(s)	4185
PagI	TCATGA	4 cut(s)	381, 1165, 2437, 3474
PaqCI	CACCTGC	2 cut(s)	1669, 4410
PciI	ACATGT	2 cut(s)	3123, 4887
PciSI	GCTCTTC	1 cut(s)	1788
PctI	GAATGC	2 cut(s)	76, 2758
PdmI	GAANNNNTTC	6 cut(s)	179, 500, 657, 1230, 1859, 3957
Pfl23II	CGTACG	1 cut(s)	2083
PflFI	GACNNNGTC	1 cut(s)	3827
PflMI	CCANNNNNTGG	1 cut(s)	1315
PfoI	TCCNGGA	3 cut(s)	661, 1828, 3715
PmaCI	CACGTG	1 cut(s)	2835
PmlI	CACGTG	1 cut(s)	2835
Ppu21I	YACGTR	2 cut(s)	2087, 2835
PscI	ACATGT	2 cut(s)	3123, 4887
PshAI	GACNNNNGTC	1 cut(s)	1117
PshBI	ATTAAT	1 cut(s)	3378
PsiI	TTATAA	1 cut(s)	1382
Psp124BI	GAGCTC	1 cut(s)	3025
Psp6I	CCWGG	9 cut(s)	15, 604, 661, 1770, 1828, 2179, 2881, 3715, 4644
PspCI	CACGTG	1 cut(s)	2835
PspEI	GGTNACC	1 cut(s)	1106
PspFI	CCCAGC	1 cut(s)	4563
PspGI	CCWGG	9 cut(s)	15, 604, 661, 1770, 1828, 2179, 2881, 3715, 4644
PspLI	CGTACG	1 cut(s)	2083
PspN4I	GGNNCC	6 cut(s)	960, 1005, 3010, 3736, 3990, 4877
PspPI	GGNCC	7 cut(s)	168, 959, 3009, 3198, 3256, 4483, 4876
PspXI	VCTCGAGB	1 cut(s)	4185
PstI	CTGCAG	2 cut(s)	4237, 4573
PstNI	CAGNNNCTG	1 cut(s)	4010
PsuI	RGATCY	8 cut(s)	402, 512, 1003, 3082, 3290, 3734, 3955, 4749
PsyI	GACNNNGTC	1 cut(s)	3827
PvuII	CAGCTG	2 cut(s)	4238, 4574
RseI	CAYNNNNRTG	2 cut(s)	3416, 4047
SacI	GAGCTC	1 cut(s)	3025
SapI	GCTCTTC	1 cut(s)	1788
Sau96I	GGNCC	7 cut(s)	168, 959, 3009, 3198, 3256, 4483, 4876
ScaI	AGTACT	1 cut(s)	1954
SduI	GDGCHC	9 cut(s)	371, 1342, 2311, 3025, 3185, 4081, 4192, 4401, 4448
SfcI	CTRYAG	7 cut(s)	108, 453, 505, 1367, 2007, 4233, 4569
Sfr274I	CTCGAG	1 cut(s)	4185
SfuI	TTCGAA	2 cut(s)	3886, 4854
SinI	GGWCC	4 cut(s)	168, 3009, 4483, 4876
SlaI	CTCGAG	1 cut(s)	4185
SmiMI	CAYNNNNRTG	2 cut(s)	3416, 4047
SmlI	CTYRAG	2 cut(s)	2302, 4185
SmoI	CTYRAG	2 cut(s)	2302, 4185
SphI	GCATGC	1 cut(s)	3871
SsiI	CCGC	8 cut(s)	98, 962, 1742, 2519, 3649, 3706, 4165, 4676
SspI	AATATT	5 cut(s)	717, 1041, 2221, 3580, 4469
SspMI	CTAG	9 cut(s)	140, 746, 891, 1991, 2256, 2432, 2967, 4529, 4755
SstI	GAGCTC	1 cut(s)	3025
StyI	CCWWGG	5 cut(s)	866, 895, 1509, 3052, 4486
TaiI	ACGT	5 cut(s)	1423, 1758, 1898, 2089, 2837
TaqII	GACCGA	1 cut(s)	4362
TatI	WGTACW	6 cut(s)	216, 251, 528, 1539, 1952, 3601
TauI	GCSGC	2 cut(s)	964, 4168
TscAI	CASTG	9 cut(s)	297, 498, 541, 819, 1477, 1618, 1686, 2943, 4159
TseFI	GTSAC	7 cut(s)	115, 1609, 2087, 2146, 2932, 4343, 4731
Tsp45I	GTSAC	7 cut(s)	115, 1609, 2087, 2146, 2932, 4343, 4731
TspGWI	ACGGA	4 cut(s)	81, 782, 1750, 3440
TspRI	CASTG	9 cut(s)	297, 498, 541, 819, 1477, 1618, 1686, 2943, 4159
Tth111I	GACNNNGTC	1 cut(s)	3827
Van91I	CCANNNNNTGG	1 cut(s)	1315
VneI	GTGCAC	1 cut(s)	1338
VpaK11BI	GGWCC	4 cut(s)	168, 3009, 4483, 4876
VspI	ATTAAT	1 cut(s)	3378
XagI	CCTNNNNNAGG	2 cut(s)	4061, 4490
XbaI	TCTAGA	1 cut(s)	4754
XceI	RCATGY	4 cut(s)	2796, 3127, 3871, 4891
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2061, 4844
XhoI	CTCGAG	1 cut(s)	4185
XmiI	GTMKAC	1 cut(s)	2265
XmnI	GAANNNNTTC	6 cut(s)	179, 500, 657, 1230, 1859, 3957
XspI	CTAG	9 cut(s)	140, 746, 891, 1991, 2256, 2432, 2967, 4529, 4755
ZrmI	AGTACT	1 cut(s)	1954
Zsp2I	ATGCAT	2 cut(s)	1489, 2351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.