FvH4_3g18102

Gamma-glutamyl

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
11541273 .. 11545969
4697 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18102.t4

Sequence Viewer

Length: 1065 bp
ATGCCCTCCCCCTTCCTCTCTAATCCCACCCCTACCCCACCTCCGGAGTCCTCCTCCGACGCCCCAAACGACGCCGTTCCCGCCGCAGCTTCCTCCTCCTCTTCTCGCTACTCGGAGATGTGGAACTACCTCTGGATCCCCTTCCTCATTTCCCTCTCCAAGGAGCTCACCTCCGCCAAGGCCCAGTCCGCGCCGGCGATTCTCCTCCCGAGTCAACTCGCCGCCTCCGACTCGTCGTCCCCGAGGTGTACGCCGCTGGACCCCAAGTTGAATTACCGCCCGGTGATCGGAATCCTCAGCCATCCCGGCGACGGCGCCTCCGGTCGGCTCAGTAATGTTACTGGTACTTCGTACATCGCCGCCTCCTACGTCAAGTTCGTTGAGTCGGCCGGCGCTCGTGTTATTCCGCTCATCTATAACGAGCCTTCCGATGTGCTCTTCCAGAAGCTGAATCTAGTCAACGGAGTGCTTTTCACCGGAGGCTGGGCTAAAAGTGGTCGGTACTATGATGTTGCTGAGAAAATATTTAAGATGATTTTAGAGAGGAATGATGCTGGTGACCATTTTCCATTATACGCCATCTGCTTGGGTTTTGAACTTCTAACAATGATCATCAGCAAGAATAAGAAAATTCTGGAGTCATTCAGTGCTGCAGATATGGCATCAACTTTACAATTTACTGAGAACATGAATATTGAGGGAACTGTGTTTCAAAGATTTCCGCCTGATTTGCTTAGAAAGTTGAGTACAGATTGTATTGTCATGCAGAACCACCATTATGGTATCTCACCTGAGACGTTGCAACAAAACCCAGATCTGTCAAGTTTCTTTAAGATCTTGACAACCAGTACTGATGAAGATGATAAGGTCTATGTCTCCACAGTACATGCATACCACTATCCTGTGACTGCCTTCCAATGGCATCCTGAGAAAAATGCTTTTGAATGGGGGTTACAGATGATTCCACACTCAGAAGATGCCATTCAAGTGACTCAGCACATCGCAAACTTCTTGGTCAGGAAGGGGGAGGCCATGCAACAAGTATTGGAAGATGTTGAAATTTAG

Protein Analysis

355

Amino Acids

39.17

Weight (kDa)

5.28

Isoelectric Point (pI)

49.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C26 PF07722 94 - 310 2e-14 Peptidase C26
GATase PF00117 127 - 321 6.6e-11 Glutamine amidotransferase class-I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 314
AccBSI CCGCTC 1 cut(s) 409
AccII CGCG 1 cut(s) 191
AccIII TCCGGA 1 cut(s) 43
AclWI GGATC 2 cut(s) 130, 143
AcoI YGGCCR 1 cut(s) 387
AcsI RAATTY 2 cut(s) 630, 1059
AcyI GRCGYC 3 cut(s) 60, 72, 315
AfaI GTAC 7 cut(s) 250, 346, 353, 503, 748, 850, 885
AfiI CCNNNNNNNGG 7 cut(s) 43, 160, 287, 311, 324, 483, 918
AgsI TTSAA 6 cut(s) 271, 596, 713, 944, 986, 1058
AhdI GACNNNNNGTC 1 cut(s) 235
AluBI AGCT 3 cut(s) 89, 166, 448
AluI AGCT 3 cut(s) 89, 166, 448
Alw21I GWGCWC 2 cut(s) 168, 438
Alw26I GTCTC 2 cut(s) 788, 880
AlwI GGATC 2 cut(s) 130, 143
AlwNI CAGNNNCTG 1 cut(s) 448
Ama87I CYCGRG 2 cut(s) 208, 241
Aor13HI TCCGGA 1 cut(s) 43
AoxI GGCC 3 cut(s) 180, 387, 1029
ApeKI GCWGC 2 cut(s) 86, 650
ApoI RAATTY 2 cut(s) 630, 1059
AspLEI GCGC 3 cut(s) 193, 317, 395
AspS9I GGNCC 2 cut(s) 181, 259
AsuC2I CCSGG 2 cut(s) 281, 306
AsuHPI GGTGA 5 cut(s) 160, 295, 466, 569, 780
AvaI CYCGRG 2 cut(s) 208, 241
AvaII GGWCC 1 cut(s) 259
BamHI GGATCC 1 cut(s) 135
BanI GGYRCC 1 cut(s) 314
BanII GRGCYC 1 cut(s) 168
BauI CACGAG 1 cut(s) 396
Bbv12I GWGCWC 2 cut(s) 168, 438
BbvCI CCTCAGC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 98, 637
BccI CCATC 2 cut(s) 309, 587
BceAI ACGGC 2 cut(s) 59, 328
BclI TGATCA 1 cut(s) 609
BcnI CCSGG 2 cut(s) 281, 306
BcoDI GTCTC 2 cut(s) 788, 880
BfaI CTAG 1 cut(s) 455
BfmI CTRYAG 1 cut(s) 651
BfoI RGCGCY 2 cut(s) 318, 396
BglI GCCNNNNNGGC 1 cut(s) 306
BglII AGATCT 2 cut(s) 814, 834
BisI GCNGC 6 cut(s) 84, 87, 222, 254, 360, 651
BlsI GCNGC 6 cut(s) 85, 88, 223, 255, 361, 652
BmcAI AGTACT 1 cut(s) 850
Bme1390I CCNGG 2 cut(s) 281, 306
Bme18I GGWCC 1 cut(s) 259
BmeRI GACNNNNNGTC 1 cut(s) 235
BmeT110I CYCGRG 2 cut(s) 208, 241
BmgT120I GGNCC 2 cut(s) 181, 259
BmiI GGNNCC 3 cut(s) 137, 261, 316
BmrFI CCNGG 2 cut(s) 281, 306
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 4 cut(s) 541, 671, 931, 967
BmuI ACTGGG 1 cut(s) 178
BplI GAGNNNNNCTC 4 cut(s) 38, 70, 155, 187
BpmI CTGGAG 1 cut(s) 656
Bpu10I CCTNAGC 1 cut(s) 296
BpuMI CCSGG 2 cut(s) 281, 306
BsaBI GATNNNNATC 1 cut(s) 290
BsaHI GRCGYC 3 cut(s) 60, 72, 315
BsaJI CCNNGG 3 cut(s) 159, 177, 242
BsaWI WCCGGW 3 cut(s) 43, 320, 476
BsaXI ACNNNNNCTCC 4 cut(s) 25, 55, 302, 332
Bsc4I CCNNNNNNNGG 7 cut(s) 43, 160, 287, 311, 324, 483, 918
Bse118I RCCGGY 2 cut(s) 193, 389
Bse1I ACTGG 3 cut(s) 184, 346, 846
Bse8I GATNNNNATC 1 cut(s) 290
BseAI TCCGGA 1 cut(s) 43
BseDI CCNNGG 3 cut(s) 159, 177, 242
BseGI GGATG 2 cut(s) 301, 922
BseJI GATNNNNATC 1 cut(s) 290
BseLI CCNNNNNNNGG 7 cut(s) 43, 160, 287, 311, 324, 483, 918
BseMII CTCAG 8 cut(s) 310, 343, 507, 672, 783, 918, 984, 1007
BseNI ACTGG 3 cut(s) 184, 346, 846
BseRI GAGGAG 4 cut(s) 43, 85, 88, 194
BseX3I CGGCCG 1 cut(s) 387
BseXI GCAGC 2 cut(s) 98, 637
BseYI CCCAGC 1 cut(s) 483
Bsh1236I CGCG 1 cut(s) 191
Bsh1285I CGRYCG 2 cut(s) 325, 390
BshFI GGCC 3 cut(s) 182, 389, 1031
BshNI GGYRCC 1 cut(s) 314
BsiEI CGRYCG 2 cut(s) 325, 390
BsiHKAI GWGCWC 2 cut(s) 168, 438
BsiHKCI CYCGRG 2 cut(s) 208, 241
BsiSI CCGG 7 cut(s) 44, 194, 281, 306, 321, 390, 477
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 7 cut(s) 43, 160, 287, 311, 324, 483, 918
BsmAI GTCTC 2 cut(s) 788, 880
BsmBI CGTCTC 1 cut(s) 788
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 3 cut(s) 182, 389, 1031
BsoBI CYCGRG 2 cut(s) 208, 241
Bsp1286I GDGCHC 2 cut(s) 168, 438
Bsp13I TCCGGA 1 cut(s) 43
Bsp143I GATC 5 cut(s) 135, 285, 609, 814, 834
BspANI GGCC 3 cut(s) 182, 389, 1031
BspCNI CTCAG 8 cut(s) 309, 342, 508, 673, 784, 919, 983, 1006
BspEI TCCGGA 1 cut(s) 43
BspFNI CGCG 1 cut(s) 191
BspLI GGNNCC 3 cut(s) 137, 261, 316
BspMAI CTGCAG 1 cut(s) 655
BspPI GGATC 2 cut(s) 130, 143
BspQI GCTCTTC 1 cut(s) 443
BspT107I GGYRCC 1 cut(s) 314
BsrBI CCGCTC 1 cut(s) 409
BsrFI RCCGGY 2 cut(s) 193, 389
BsrI ACTGG 3 cut(s) 184, 346, 846
BssAI RCCGGY 2 cut(s) 193, 389
BssECI CCNNGG 3 cut(s) 159, 177, 242
BssMI GATC 5 cut(s) 135, 285, 609, 814, 834
BssNI GRCGYC 3 cut(s) 60, 72, 315
BssSI CACGAG 1 cut(s) 396
BssT1I CCWWGG 2 cut(s) 159, 177
Bst2BI CACGAG 1 cut(s) 396
Bst4CI ACNGT 2 cut(s) 706, 883
Bst6I CTCTTC 2 cut(s) 106, 443
BstACI GRCGYC 3 cut(s) 60, 72, 315
BstC8I GCNNGC 2 cut(s) 195, 391
BstDEI CTNAG 9 cut(s) 296, 329, 516, 681, 734, 792, 927, 970, 993
BstEII GGTNACC 1 cut(s) 557
BstENI CCTNNNNNAGG 1 cut(s) 158
BstF5I GGATG 2 cut(s) 301, 922
BstFNI CGCG 1 cut(s) 191
BstH2I RGCGCY 2 cut(s) 318, 396
BstHHI GCGC 3 cut(s) 193, 317, 395
BstKTI GATC 5 cut(s) 138, 288, 612, 817, 837
BstMAI GTCTC 2 cut(s) 788, 880
BstMBI GATC 5 cut(s) 135, 285, 609, 814, 834
BstMCI CGRYCG 2 cut(s) 325, 390
BstMWI GCNNNNNNNGC 5 cut(s) 80, 188, 306, 659, 730
BstNSI RCATGY 1 cut(s) 890
BstPI GGTNACC 1 cut(s) 557
BstSCI CCNGG 2 cut(s) 279, 304
BstSFI CTRYAG 1 cut(s) 651
BstUI CGCG 1 cut(s) 191
BstV1I GCAGC 2 cut(s) 98, 637
BstX2I RGATCY 3 cut(s) 135, 814, 834
BstXI CCANNNNNNTGG 2 cut(s) 586, 779
BstYI RGATCY 3 cut(s) 135, 814, 834
BstZI CGGCCG 1 cut(s) 387
BsuRI GGCC 3 cut(s) 182, 389, 1031
BtgZI GCGATG 2 cut(s) 340, 985
BtsCI GGATG 2 cut(s) 301, 922
BtsIMutI CAGTG 1 cut(s) 652
Cac8I GCNNGC 2 cut(s) 195, 391
CaiI CAGNNNCTG 1 cut(s) 448
CfoI GCGC 3 cut(s) 193, 317, 395
Cfr10I RCCGGY 2 cut(s) 193, 389
Cfr13I GGNCC 2 cut(s) 181, 259
CseI GACGC 2 cut(s) 68, 80
Csp6I GTAC 7 cut(s) 249, 345, 352, 502, 747, 849, 884
CviAII CATG 4 cut(s) 688, 763, 887, 1033
CviQI GTAC 7 cut(s) 249, 345, 352, 502, 747, 849, 884
DdeI CTNAG 9 cut(s) 296, 329, 516, 681, 734, 792, 927, 970, 993
DinI GGCGCC 1 cut(s) 316
DpnI GATC 5 cut(s) 137, 287, 611, 816, 836
DpnII GATC 5 cut(s) 135, 285, 609, 814, 834
DriI GACNNNNNGTC 1 cut(s) 235
EaeI YGGCCR 1 cut(s) 387
EagI CGGCCG 1 cut(s) 387
Eam1104I CTCTTC 2 cut(s) 106, 443
Eam1105I GACNNNNNGTC 1 cut(s) 235
EarI CTCTTC 2 cut(s) 106, 443
EciI GGCGGA 2 cut(s) 163, 711
Ecl136II GAGCTC 1 cut(s) 166
EclXI CGGCCG 1 cut(s) 387
Eco130I CCWWGG 2 cut(s) 159, 177
Eco24I GRGCYC 1 cut(s) 168
Eco47I GGWCC 1 cut(s) 259
Eco52I CGGCCG 1 cut(s) 387
Eco53kI GAGCTC 1 cut(s) 166
Eco88I CYCGRG 2 cut(s) 208, 241
Eco91I GGTNACC 1 cut(s) 557
EcoICRI GAGCTC 1 cut(s) 166
EcoNI CCTNNNNNAGG 1 cut(s) 158
EcoO65I GGTNACC 1 cut(s) 557
EcoT14I CCWWGG 2 cut(s) 159, 177
EcoT22I ATGCAT 1 cut(s) 892
EcoT38I GRGCYC 1 cut(s) 168
EgeI GGCGCC 1 cut(s) 316
EheI GGCGCC 1 cut(s) 316
ErhI CCWWGG 2 cut(s) 159, 177
Esp3I CGTCTC 1 cut(s) 788
FaeI CATG 4 cut(s) 691, 766, 890, 1036
FaqI GGGAC 1 cut(s) 223
FatI CATG 4 cut(s) 687, 762, 886, 1032
FauI CCCGC 1 cut(s) 88
FbaI TGATCA 1 cut(s) 609
Fnu4HI GCNGC 6 cut(s) 84, 87, 222, 254, 360, 651
FokI GGATG 2 cut(s) 288, 909
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 6 cut(s) 84, 87, 222, 254, 360, 651
FspBI CTAG 1 cut(s) 455
GlaI GCGC 3 cut(s) 192, 316, 394
GluI GCNGC 6 cut(s) 84, 87, 222, 254, 360, 651
GsaI CCCAGC 1 cut(s) 487
GsuI CTGGAG 1 cut(s) 656
HaeII RGCGCY 2 cut(s) 318, 396
HaeIII GGCC 3 cut(s) 182, 389, 1031
HapII CCGG 7 cut(s) 44, 194, 281, 306, 321, 390, 477
HgaI GACGC 2 cut(s) 68, 80
HhaI GCGC 3 cut(s) 193, 317, 395
Hin1I GRCGYC 3 cut(s) 60, 72, 315
Hin1II CATG 4 cut(s) 691, 766, 890, 1036
Hin6I GCGC 3 cut(s) 191, 315, 393
HinP1I GCGC 3 cut(s) 191, 315, 393
HincII GTYRAC 2 cut(s) 215, 460
HindII GTYRAC 2 cut(s) 215, 460
HpaII CCGG 7 cut(s) 44, 194, 281, 306, 321, 390, 477
HphI GGTGA 5 cut(s) 160, 295, 466, 569, 780
Hpy166II GTNNAC 3 cut(s) 215, 249, 460
Hpy188I TCNGA 6 cut(s) 58, 115, 229, 290, 430, 973
Hpy188III TCNNGA 8 cut(s) 44, 133, 208, 442, 635, 838, 926, 1018
Hpy8I GTNNAC 3 cut(s) 215, 249, 460
Hpy99I CGWCG 4 cut(s) 62, 74, 238, 314
HpyAV CCTTC 5 cut(s) 22, 151, 435, 922, 1015
HpyCH4III ACNGT 2 cut(s) 706, 883
HpyCH4IV ACGT 2 cut(s) 369, 797
HpyCH4V TGCA 5 cut(s) 653, 766, 802, 890, 1036
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 188, 306, 659, 730
HpyF3I CTNAG 9 cut(s) 296, 329, 516, 681, 734, 792, 927, 970, 993
HpySE526I ACGT 2 cut(s) 369, 797
Hsp92I GRCGYC 3 cut(s) 60, 72, 315
Hsp92II CATG 4 cut(s) 691, 766, 890, 1036
HspAI GCGC 3 cut(s) 191, 315, 393
KasI GGCGCC 1 cut(s) 314
Kpn2I TCCGGA 1 cut(s) 43
KroI GCCGGC 2 cut(s) 193, 389
KroNI GCCGGC 2 cut(s) 195, 391
Ksp22I TGATCA 1 cut(s) 609
Kzo9I GATC 5 cut(s) 135, 285, 609, 814, 834
LguI GCTCTTC 1 cut(s) 443
LmnI GCTCC 1 cut(s) 163
Lsp1109I GCAGC 2 cut(s) 98, 637
LweI GCATC 4 cut(s) 541, 671, 931, 967
MaeI CTAG 1 cut(s) 455
MaeII ACGT 2 cut(s) 369, 797
MaeIII GTNAC 5 cut(s) 337, 557, 904, 951, 988
MalI GATC 5 cut(s) 137, 287, 611, 816, 836
MbiI CCGCTC 1 cut(s) 409
MboI GATC 5 cut(s) 135, 285, 609, 814, 834
MboII GAAGA 5 cut(s) 93, 430, 869, 986, 1061
MflI RGATCY 3 cut(s) 135, 814, 834
MhlI GDGCHC 2 cut(s) 168, 438
MluCI AATT 4 cut(s) 271, 630, 674, 1059
Mly113I GGCGCC 1 cut(s) 315
MlyI GAGTC 6 cut(s) 56, 220, 224, 392, 647, 985
MmeI TCCRAC 2 cut(s) 81, 252
Mph1103I ATGCAT 1 cut(s) 892
MreI CGCCGGCG 1 cut(s) 193
MroI TCCGGA 1 cut(s) 43
MroNI GCCGGC 2 cut(s) 193, 389
MseI TTAA 2 cut(s) 528, 831
MslI CAYNNNNRTG 2 cut(s) 777, 986
MspA1I CMGCKG 1 cut(s) 256
MspI CCGG 7 cut(s) 44, 194, 281, 306, 321, 390, 477
MspR9I CCNGG 2 cut(s) 281, 306
MvnI CGCG 1 cut(s) 191
MwoI GCNNNNNNNGC 5 cut(s) 80, 188, 306, 659, 730
NaeI GCCGGC 2 cut(s) 195, 391
NarI GGCGCC 1 cut(s) 315
NciI CCSGG 2 cut(s) 281, 306
NdeII GATC 5 cut(s) 135, 285, 609, 814, 834
NgoMIV GCCGGC 2 cut(s) 193, 389
NlaIII CATG 4 cut(s) 691, 766, 890, 1036
NlaIV GGNNCC 3 cut(s) 137, 261, 316
NmuCI GTSAC 3 cut(s) 557, 904, 988
NsiI ATGCAT 1 cut(s) 892
NspI RCATGY 1 cut(s) 890
PciSI GCTCTTC 1 cut(s) 443
PcsI WCGNNNNNNNCGW 5 cut(s) 66, 225, 239, 375, 426
PdiI GCCGGC 2 cut(s) 195, 391
PfeI GAWTC 4 cut(s) 199, 291, 451, 961
PkrI GCNGC 6 cut(s) 85, 88, 223, 255, 361, 652
PleI GAGTC 6 cut(s) 55, 219, 224, 391, 646, 985
PluTI GGCGCC 1 cut(s) 318
PpsI GAGTC 6 cut(s) 55, 219, 224, 391, 646, 985
Psp124BI GAGCTC 1 cut(s) 168
PspEI GGTNACC 1 cut(s) 557
PspFI CCCAGC 1 cut(s) 483
PspN4I GGNNCC 3 cut(s) 137, 261, 316
PspPI GGNCC 2 cut(s) 181, 259
PstI CTGCAG 1 cut(s) 655
PstNI CAGNNNCTG 1 cut(s) 448
PsuI RGATCY 3 cut(s) 135, 814, 834
RsaI GTAC 7 cut(s) 250, 346, 353, 503, 748, 850, 885
RsaNI GTAC 7 cut(s) 249, 345, 352, 502, 747, 849, 884
RseI CAYNNNNRTG 2 cut(s) 777, 986
SacI GAGCTC 1 cut(s) 168
SapI GCTCTTC 1 cut(s) 443
SaqAI TTAA 2 cut(s) 528, 831
SatI GCNGC 6 cut(s) 84, 87, 222, 254, 360, 651
Sau3AI GATC 5 cut(s) 135, 285, 609, 814, 834
Sau96I GGNCC 2 cut(s) 181, 259
ScaI AGTACT 1 cut(s) 850
SchI GAGTC 6 cut(s) 56, 220, 224, 392, 647, 985
ScrFI CCNGG 2 cut(s) 281, 306
SduI GDGCHC 2 cut(s) 168, 438
SfaNI GCATC 4 cut(s) 541, 671, 931, 967
SfcI CTRYAG 1 cut(s) 651
SfoI GGCGCC 1 cut(s) 316
SgrAI CRCCGGYG 1 cut(s) 193
SinI GGWCC 1 cut(s) 259
SmiMI CAYNNNNRTG 2 cut(s) 777, 986
Sse9I AATT 4 cut(s) 271, 630, 674, 1059
SspDI GGCGCC 1 cut(s) 314
SspI AATATT 2 cut(s) 525, 694
SspMI CTAG 1 cut(s) 455
SstI GAGCTC 1 cut(s) 168
StyD4I CCNGG 2 cut(s) 279, 304
StyI CCWWGG 2 cut(s) 159, 177
TaaI ACNGT 2 cut(s) 706, 883
TaiI ACGT 2 cut(s) 372, 800
TasI AATT 4 cut(s) 271, 630, 674, 1059
TatI WGTACW 3 cut(s) 746, 848, 883
TauI GCSGC 4 cut(s) 86, 224, 256, 362
TfiI GAWTC 4 cut(s) 199, 291, 451, 961
Tru1I TTAA 2 cut(s) 528, 831
Tru9I TTAA 2 cut(s) 528, 831
TscAI CASTG 1 cut(s) 652
TseFI GTSAC 3 cut(s) 557, 904, 988
TseI GCWGC 2 cut(s) 86, 650
Tsp45I GTSAC 3 cut(s) 557, 904, 988
TspDTI ATGAA 2 cut(s) 704, 870
TspGWI ACGGA 1 cut(s) 477
TspRI CASTG 1 cut(s) 652
VpaK11BI GGWCC 1 cut(s) 259
XagI CCTNNNNNAGG 1 cut(s) 158
XapI RAATTY 2 cut(s) 630, 1059
XceI RCATGY 1 cut(s) 890
XspI CTAG 1 cut(s) 455
ZrmI AGTACT 1 cut(s) 850
Zsp2I ATGCAT 1 cut(s) 892
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.