Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004728

Physical Location & Seq

Genomic Coordinates Forward (+)

24151604 .. 24155958

Gene Structure 4355 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30984

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGCCCTCCCCCTTTCTCGCTAAGCCCACCTCTATCCCTCCTCCCAACTCCGCCGAGTCCTCCTCCTCCTCCGACGCCCCAAACGACGCCGTTCCCGCCTCCTCCTCCTCCTCGCGCTGCTCGGAAATGTGGAACTATCTCTGGATCCCCTTCCTGATTTCCCTCTCCAAGGAGCTCACCTCCGCCAAGGCGCAGTCCACGCCGACGATTCTGCTCCCGACTCAACTCGCTGGCTCCGACTCGTCGCAGAGGTGTACGGCGCTTGACCCCAAGCTCAATTACCGCCCGGTGATCGGTATTCTCAGCCATCCCGGCGACGGCGCCTCCGGTCGGCTCAGTAATGCTACCGGTACTTCCTACATCGCCGCCTCCTACGTCAAGTTCGTTGAATCTGCCGGCGCTCGCGTTATTCCGCTCATCTATAACGAGCCTTCTGATGTTCTCTTCCAGAAGCTCAATCTGGTCAATGGCATGCTTTTCACCGGAGGCTGGGCTAAAAGTGGTCGGTACTATGAAGTTGCTGCGAAAATATTTAAGATGATTTTAAAGAAGAATGATGCTGGTGACCATTTTCCATTATATGCCATCTGCTTGGGTTTCGAACTTCTAACAATGATCATCAGCAAGGTCTATGTCTCCACAGTACATGCATACCACTATCCGGTGACTGCCTTCCAATGGCATCTGGAGAAAAATGCTTTTGAATGGGGGTTACCGATGATTCCACACTCAGAAGATGCCATTCACGTGACTCAGCACATCGCAAACTTTTTTATCAGCGAGGCAAGGAAGTCATTAAACAGGCCACCTATTCAGGATGTCCTCGACAATCTCATCTACAATTACAGTCCAACATTTTGTGGGAAGGCAGGGAAGGGATACGATGAAGTTTACATCTTTAAACAACCTTCACTCGCACATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006082 GO:0006508 GO:0006575 GO:0006725 GO:0006732 GO:0006760 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008238 GO:0008242 GO:0009987 GO:0016787 GO:0019538 GO:0019752 GO:0030312 GO:0034641 GO:0034722 GO:0042558 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0044237 GO:0044238 GO:0044281 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046900 GO:0051186 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00790 ko01523 map00790 map01523

Pfam Domains

Protein Families

Peptidase_C26

Protein Analysis

308

Amino Acids

33.86

Weight (kDa)

7.7

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C26	PF07722	96 - 205	3.2e-10	Peptidase C26

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78660 AT1G78660 AT1G78660 AT1G78680 AT1G78680
fragaria_vesca	FvH4_3g18102 FvH4_3g18102 FvH4_3g18102 FvH4_3g18102 FvH4_3g18102 FvH4_3g18102 FvH4_3g18102
malus_domestica	MD00G1184200.v1.1 MD03G1244700.v1.1 MD03G1244800.v1.1
prunus_persica	Prupe.4G159900_v2.0.a1
pyrus_communis	pycom03g19410 pycom11g23430
rosa_chinensis	RchiOBHm_Chr5g0030171 RchiOBHm_Chr5g0030241 RchiOBHm_Chr5g0030431 RchiOBHm_Chr5g0030511
rosa_laevigata	RLG00000033221
rosa_multiflora	Rmu_sc0000280.1_g000003 Rmu_sc0015917.1_g000002
rosa_roxburghii	Rroxscaffold_1G00049790
rosa_rugosa	Rorug05G0118100
rosa_samantha	Rh5AG210300 Rh5BG209500 Rh5DG213700
rosa_wichuraiana	Rw5G019210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	320
AccBSI	CCGCTC	1 cut(s)	415
AccII	CGCG	2 cut(s)	115, 405
AciI	CCGC	6 cut(s)	51, 96, 183, 283, 366, 413
AclWI	GGATC	2 cut(s)	139, 152
AcvI	CACGTG	1 cut(s)	748
AcyI	GRCGYC	3 cut(s)	75, 87, 321
AfaI	GTAC	4 cut(s)	256, 352, 509, 645
AfiI	CCNNNNNNNGG	7 cut(s)	169, 293, 317, 330, 489, 661, 678
AgeI	ACCGGT	1 cut(s)	347
AgsI	TTSAA	2 cut(s)	389, 704
AluBI	AGCT	3 cut(s)	175, 274, 454
AluI	AGCT	3 cut(s)	175, 274, 454
Alw21I	GWGCWC	1 cut(s)	177
Alw26I	GTCTC	1 cut(s)	640
AlwI	GGATC	2 cut(s)	139, 152
AoxI	GGCC	1 cut(s)	803
ApeKI	GCWGC	2 cut(s)	117, 521
AsiGI	ACCGGT	1 cut(s)	347
AspLEI	GCGC	5 cut(s)	117, 193, 262, 323, 401
AsuC2I	CCSGG	2 cut(s)	287, 312
AsuHPI	GGTGA	5 cut(s)	169, 301, 472, 575, 676
AsuII	TTCGAA	1 cut(s)	600
BamHI	GGATCC	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	320
BanII	GRGCYC	1 cut(s)	177
BbrPI	CACGTG	1 cut(s)	748
Bbv12I	GWGCWC	1 cut(s)	177
BbvI	GCAGC	2 cut(s)	104, 508
BccI	CCATC	2 cut(s)	315, 593
BceAI	ACGGC	3 cut(s)	74, 273, 334
BcgI	CGANNNNNNTGC	2 cut(s)	193, 227
BciVI	GTATCC	1 cut(s)	872
BclI	TGATCA	1 cut(s)	615
BcnI	CCSGG	2 cut(s)	287, 312
BcoDI	GTCTC	1 cut(s)	640
BfoI	RGCGCY	3 cut(s)	263, 324, 402
BfuI	GTATCC	1 cut(s)	872
BglI	GCCNNNNNGGC	1 cut(s)	312
BisI	GCNGC	3 cut(s)	118, 366, 522
BlpI	GCTNAGC	1 cut(s)	21
BlsI	GCNGC	3 cut(s)	119, 367, 523
Bme1390I	CCNGG	2 cut(s)	287, 312
BmiI	GGNNCC	3 cut(s)	146, 235, 322
BmrFI	CCNGG	2 cut(s)	287, 312
BmsI	GCATC	3 cut(s)	547, 691, 727
BplI	GAGNNNNNCTC	4 cut(s)	47, 79, 164, 196
BpmI	CTGGAG	1 cut(s)	707
Bpu1102I	GCTNAGC	1 cut(s)	21
Bpu14I	TTCGAA	1 cut(s)	600
BpuMI	CCSGG	2 cut(s)	287, 312
BsaAI	YACGTR	1 cut(s)	748
BsaHI	GRCGYC	3 cut(s)	75, 87, 321
BsaJI	CCNNGG	2 cut(s)	168, 186
BsaWI	WCCGGW	4 cut(s)	326, 347, 482, 661
BsaXI	ACNNNNNCTCC	2 cut(s)	308, 338
Bsc4I	CCNNNNNNNGG	7 cut(s)	169, 293, 317, 330, 489, 661, 678
Bse118I	RCCGGY	2 cut(s)	347, 395
BseDI	CCNNGG	2 cut(s)	168, 186
BseGI	GGATG	2 cut(s)	307, 823
BseLI	CCNNNNNNNGG	7 cut(s)	169, 293, 317, 330, 489, 661, 678
BseMII	CTCAG	4 cut(s)	316, 349, 744, 767
BseRI	GAGGAG	8 cut(s)	30, 52, 55, 58, 91, 94, 97, 100
BseXI	GCAGC	2 cut(s)	104, 508
BseYI	CCCAGC	1 cut(s)	489
Bsh1236I	CGCG	2 cut(s)	115, 405
Bsh1285I	CGRYCG	1 cut(s)	331
BshFI	GGCC	1 cut(s)	805
BshNI	GGYRCC	1 cut(s)	320
BshTI	ACCGGT	1 cut(s)	347
BsiEI	CGRYCG	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	7 cut(s)	287, 312, 327, 348, 396, 483, 662
BslI	CCNNNNNNNGG	7 cut(s)	169, 293, 317, 330, 489, 661, 678
BsmAI	GTCTC	1 cut(s)	640
BsnI	GGCC	1 cut(s)	805
Bsp119I	TTCGAA	1 cut(s)	600
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	3 cut(s)	144, 291, 615
Bsp1720I	GCTNAGC	1 cut(s)	21
BspACI	CCGC	6 cut(s)	51, 96, 183, 283, 366, 413
BspANI	GGCC	1 cut(s)	805
BspCNI	CTCAG	4 cut(s)	315, 348, 743, 766
BspFNI	CGCG	2 cut(s)	115, 405
BspLI	GGNNCC	3 cut(s)	146, 235, 322
BspPI	GGATC	2 cut(s)	139, 152
BspT104I	TTCGAA	1 cut(s)	600
BspT107I	GGYRCC	1 cut(s)	320
BsrBI	CCGCTC	1 cut(s)	415
BsrFI	RCCGGY	2 cut(s)	347, 395
BssAI	RCCGGY	2 cut(s)	347, 395
BssECI	CCNNGG	2 cut(s)	168, 186
BssMI	GATC	3 cut(s)	144, 291, 615
BssNI	GRCGYC	3 cut(s)	75, 87, 321
BssT1I	CCWWGG	2 cut(s)	168, 186
Bst4CI	ACNGT	2 cut(s)	643, 848
Bst6I	CTCTTC	1 cut(s)	449
BstACI	GRCGYC	3 cut(s)	75, 87, 321
BstBAI	YACGTR	1 cut(s)	748
BstBI	TTCGAA	1 cut(s)	600
BstC8I	GCNNGC	4 cut(s)	232, 397, 403, 473
BstDEI	CTNAG	5 cut(s)	21, 302, 335, 730, 753
BstEII	GGTNACC	2 cut(s)	563, 711
BstENI	CCTNNNNNAGG	1 cut(s)	167
BstF5I	GGATG	2 cut(s)	307, 823
BstFNI	CGCG	2 cut(s)	115, 405
BstH2I	RGCGCY	3 cut(s)	263, 324, 402
BstHHI	GCGC	5 cut(s)	117, 193, 262, 323, 401
BstKTI	GATC	3 cut(s)	147, 294, 618
BstMAI	GTCTC	1 cut(s)	640
BstMBI	GATC	3 cut(s)	144, 291, 615
BstMCI	CGRYCG	1 cut(s)	331
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 199, 312
BstNSI	RCATGY	2 cut(s)	475, 650
BstPI	GGTNACC	2 cut(s)	563, 711
BstSCI	CCNGG	2 cut(s)	285, 310
BstUI	CGCG	2 cut(s)	115, 405
BstV1I	GCAGC	2 cut(s)	104, 508
BstX2I	RGATCY	1 cut(s)	144
BstXI	CCANNNNNNTGG	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	144
BsuI	GTATCC	1 cut(s)	872
BsuRI	GGCC	1 cut(s)	805
BtgZI	GCGATG	2 cut(s)	346, 745
BtsCI	GGATG	2 cut(s)	307, 823
Cac8I	GCNNGC	4 cut(s)	232, 397, 403, 473
CfoI	GCGC	5 cut(s)	117, 193, 262, 323, 401
Cfr10I	RCCGGY	2 cut(s)	347, 395
CseI	GACGC	2 cut(s)	83, 95
Csp6I	GTAC	4 cut(s)	255, 351, 508, 644
CspAI	ACCGGT	1 cut(s)	347
CviAII	CATG	2 cut(s)	472, 647
CviQI	GTAC	4 cut(s)	255, 351, 508, 644
DdeI	CTNAG	5 cut(s)	21, 302, 335, 730, 753
DinI	GGCGCC	1 cut(s)	322
DpnI	GATC	3 cut(s)	146, 293, 617
DpnII	GATC	3 cut(s)	144, 291, 615
DraI	TTTAAA	2 cut(s)	546, 901
Eam1104I	CTCTTC	1 cut(s)	449
EarI	CTCTTC	1 cut(s)	449
EciI	GGCGGA	2 cut(s)	40, 172
Ecl136II	GAGCTC	1 cut(s)	175
Eco130I	CCWWGG	2 cut(s)	168, 186
Eco24I	GRGCYC	1 cut(s)	177
Eco53kI	GAGCTC	1 cut(s)	175
Eco72I	CACGTG	1 cut(s)	748
Eco91I	GGTNACC	2 cut(s)	563, 711
EcoICRI	GAGCTC	1 cut(s)	175
EcoNI	CCTNNNNNAGG	1 cut(s)	167
EcoO65I	GGTNACC	2 cut(s)	563, 711
EcoT14I	CCWWGG	2 cut(s)	168, 186
EcoT22I	ATGCAT	1 cut(s)	652
EcoT38I	GRGCYC	1 cut(s)	177
EgeI	GGCGCC	1 cut(s)	322
EheI	GGCGCC	1 cut(s)	322
ErhI	CCWWGG	2 cut(s)	168, 186
FaeI	CATG	2 cut(s)	475, 650
FaiI	YATR	8 cut(s)	423, 473, 513, 580, 582, 633, 648, 652
FatI	CATG	2 cut(s)	471, 646
FauI	CCCGC	1 cut(s)	103
FbaI	TGATCA	1 cut(s)	615
Fnu4HI	GCNGC	3 cut(s)	118, 366, 522
FokI	GGATG	2 cut(s)	294, 830
FriOI	GRGCYC	1 cut(s)	177
Fsp4HI	GCNGC	3 cut(s)	118, 366, 522
GlaI	GCGC	5 cut(s)	116, 192, 261, 322, 400
GluI	GCNGC	3 cut(s)	118, 366, 522
GsaI	CCCAGC	1 cut(s)	493
GsuI	CTGGAG	1 cut(s)	707
HaeII	RGCGCY	3 cut(s)	263, 324, 402
HaeIII	GGCC	1 cut(s)	805
HapII	CCGG	7 cut(s)	287, 312, 327, 348, 396, 483, 662
HgaI	GACGC	2 cut(s)	83, 95
HhaI	GCGC	5 cut(s)	117, 193, 262, 323, 401
Hin1I	GRCGYC	3 cut(s)	75, 87, 321
Hin1II	CATG	2 cut(s)	475, 650
Hin6I	GCGC	5 cut(s)	115, 191, 260, 321, 399
HinP1I	GCGC	5 cut(s)	115, 191, 260, 321, 399
HinfI	GANTC	7 cut(s)	56, 208, 220, 239, 389, 721, 751
HpaII	CCGG	7 cut(s)	287, 312, 327, 348, 396, 483, 662
HphI	GGTGA	5 cut(s)	169, 301, 472, 575, 676
Hpy166II	GTNNAC	3 cut(s)	198, 255, 892
Hpy188I	TCNGA	5 cut(s)	73, 124, 238, 436, 733
Hpy188III	TCNNGA	6 cut(s)	142, 154, 217, 448, 686, 815
Hpy8I	GTNNAC	3 cut(s)	198, 255, 892
Hpy99I	CGWCG	5 cut(s)	77, 89, 208, 247, 320
HpyAV	CCTTC	6 cut(s)	160, 441, 682, 859, 868, 918
HpyCH4III	ACNGT	2 cut(s)	643, 848
HpyCH4IV	ACGT	2 cut(s)	375, 747
HpyCH4V	TGCA	1 cut(s)	650
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 199, 312
HpyF3I	CTNAG	5 cut(s)	21, 302, 335, 730, 753
HpySE526I	ACGT	2 cut(s)	375, 747
Hsp92I	GRCGYC	3 cut(s)	75, 87, 321
Hsp92II	CATG	2 cut(s)	475, 650
HspAI	GCGC	5 cut(s)	115, 191, 260, 321, 399
KasI	GGCGCC	1 cut(s)	320
KroI	GCCGGC	1 cut(s)	395
KroNI	GCCGGC	1 cut(s)	397
Ksp22I	TGATCA	1 cut(s)	615
Kzo9I	GATC	3 cut(s)	144, 291, 615
LmnI	GCTCC	3 cut(s)	172, 219, 239
Lsp1109I	GCAGC	2 cut(s)	104, 508
LweI	GCATC	3 cut(s)	547, 691, 727
MaeII	ACGT	2 cut(s)	375, 747
MaeIII	GTNAC	4 cut(s)	563, 664, 711, 748
MalI	GATC	3 cut(s)	146, 293, 617
MbiI	CCGCTC	1 cut(s)	415
MboI	GATC	3 cut(s)	144, 291, 615
MboII	GAAGA	3 cut(s)	436, 562, 746
MflI	RGATCY	1 cut(s)	144
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	2 cut(s)	277, 841
Mly113I	GGCGCC	1 cut(s)	321
MlyI	GAGTC	4 cut(s)	65, 214, 233, 745
MmeI	TCCRAC	3 cut(s)	96, 261, 875
Mph1103I	ATGCAT	1 cut(s)	652
MroNI	GCCGGC	1 cut(s)	395
MseI	TTAA	4 cut(s)	534, 545, 797, 900
MslI	CAYNNNNRTG	1 cut(s)	746
MspI	CCGG	7 cut(s)	287, 312, 327, 348, 396, 483, 662
MspR9I	CCNGG	2 cut(s)	287, 312
MvnI	CGCG	2 cut(s)	115, 405
MwoI	GCNNNNNNNGC	3 cut(s)	95, 199, 312
NaeI	GCCGGC	1 cut(s)	397
NarI	GGCGCC	1 cut(s)	321
NciI	CCSGG	2 cut(s)	287, 312
NdeII	GATC	3 cut(s)	144, 291, 615
NgoMIV	GCCGGC	1 cut(s)	395
NlaIII	CATG	2 cut(s)	475, 650
NlaIV	GGNNCC	3 cut(s)	146, 235, 322
NmeAIII	GCCGAG	1 cut(s)	79
NmuCI	GTSAC	3 cut(s)	563, 664, 748
NsiI	ATGCAT	1 cut(s)	652
NspI	RCATGY	2 cut(s)	475, 650
NspV	TTCGAA	1 cut(s)	600
PaeI	GCATGC	1 cut(s)	475
PcsI	WCGNNNNNNNCGW	3 cut(s)	81, 234, 381
PdiI	GCCGGC	1 cut(s)	397
PfeI	GAWTC	3 cut(s)	208, 389, 721
PinAI	ACCGGT	1 cut(s)	347
PkrI	GCNGC	3 cut(s)	119, 367, 523
PleI	GAGTC	4 cut(s)	64, 214, 233, 745
PluTI	GGCGCC	1 cut(s)	324
PmaCI	CACGTG	1 cut(s)	748
PmlI	CACGTG	1 cut(s)	748
PpsI	GAGTC	4 cut(s)	64, 214, 233, 745
Ppu21I	YACGTR	1 cut(s)	748
Psp124BI	GAGCTC	1 cut(s)	177
PspCI	CACGTG	1 cut(s)	748
PspEI	GGTNACC	2 cut(s)	563, 711
PspFI	CCCAGC	1 cut(s)	489
PspN4I	GGNNCC	3 cut(s)	146, 235, 322
PsuI	RGATCY	1 cut(s)	144
RsaI	GTAC	4 cut(s)	256, 352, 509, 645
RsaNI	GTAC	4 cut(s)	255, 351, 508, 644
RseI	CAYNNNNRTG	1 cut(s)	746
SacI	GAGCTC	1 cut(s)	177
SaqAI	TTAA	4 cut(s)	534, 545, 797, 900
SatI	GCNGC	3 cut(s)	118, 366, 522
Sau3AI	GATC	3 cut(s)	144, 291, 615
SchI	GAGTC	4 cut(s)	65, 214, 233, 745
ScrFI	CCNGG	2 cut(s)	287, 312
SduI	GDGCHC	1 cut(s)	177
SfaNI	GCATC	3 cut(s)	547, 691, 727
SfoI	GGCGCC	1 cut(s)	322
SfuI	TTCGAA	1 cut(s)	600
SmiMI	CAYNNNNRTG	1 cut(s)	746
SphI	GCATGC	1 cut(s)	475
Sse9I	AATT	2 cut(s)	277, 841
SsiI	CCGC	6 cut(s)	51, 96, 183, 283, 366, 413
SspDI	GGCGCC	1 cut(s)	320
SspI	AATATT	1 cut(s)	531
SstI	GAGCTC	1 cut(s)	177
StyD4I	CCNGG	2 cut(s)	285, 310
StyI	CCWWGG	2 cut(s)	168, 186
TaaI	ACNGT	2 cut(s)	643, 848
TaiI	ACGT	2 cut(s)	378, 750
TaqI	TCGA	2 cut(s)	600, 825
TasI	AATT	2 cut(s)	277, 841
TatI	WGTACW	1 cut(s)	643
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	3 cut(s)	208, 389, 721
Tru1I	TTAA	4 cut(s)	534, 545, 797, 900
Tru9I	TTAA	4 cut(s)	534, 545, 797, 900
TseFI	GTSAC	3 cut(s)	563, 664, 748
TseI	GCWGC	2 cut(s)	117, 521
Tsp45I	GTSAC	3 cut(s)	563, 664, 748
TspDTI	ATGAA	2 cut(s)	528, 900
XagI	CCTNNNNNAGG	1 cut(s)	167
XceI	RCATGY	2 cut(s)	475, 650
Zsp2I	ATGCAT	1 cut(s)	652

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.