AT1G78700

BES1/BZR1 plant transcription factor, N-terminal

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0009842
Physical Location & Seq
Forward (+)
29599349 .. 29601682
2334 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78700.1

Sequence Viewer

Length: 978 bp
ATGACATCAGGGACGAGAATGCCGACATGGAGGGAAAGAGAGAACAACAAGAGAAGAGAAAGACGACGGAGAGCAATCGCAGCTAAGATCTTCACCGGATTAAGAATGTACGGTAATTACGAGCTTCCGAAGCATTGCGACAACAACGAAGTGCTTAAAGCACTCTGTAACGAAGCTGGTTGGATCGTCGAACCTGATGGAACTACTTACCGCAAGGGATGTAGTAGACCTGTAGAGCGTATGGAGATAGGTGGTGGTTCAGCAACCGCTAGTCCTTGCTCTTCCTATCAGCCAAGTCCCTGTGCTTCTTATAATCCTAGTCCAGGCTCCTCCAACTTCATGAGTCCTGCTTCATCCTCATTTGCTAATCTTACCTCTGGTGATGGCCAATCTCTCATCCCATGGCTAAAACACCTCTCAACAACATCATCCTCATCAGCTTCTTCATCATCAAGACTCCCTAATTACCTCTATATCCCTGGAGGCTCCATAAGCGCTCCTGTAACTCCTCCTTTAAGCTCTCCAACAGCTCGTACCCCGAGAATGAACACTGATTGGCAGCAACTCAACAACTCCTTCTTTGTCTCCTCAACACCGCCAAGTCCCACGCGTCAGATCATCCCTGACTCTGAATGGTTCTCAGGGATTCAACTAGCACAAAGTGTTCCAGCTTCACCAACGTTTAGCCTCGTCTCACAAAACCCATTTGGATTCAAAGAAGAAGCAGCCTCTGCTGCTGGAGGCGGAGGAGGGTCAAGGATGTGGACACCAGGTCAAAGCGGAACCTGCTCCCCTGCTATTCCTCCTGGTGCTGACCAGACAGCAGATGTTCCAATGTCTGAAGCCGTGGCTCCTCCAGAGTTTGCTTTTGGGAGTAATACAAACGGGCTAGTGAAAGCATGGGAAGGAGAGAGGATACACGAGGAGAGTGGTTCAGATGATCTTGAACTCACTCTTGGAAACTCAAGCACCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BES1_N

Protein Analysis

325

Amino Acids

34.7

Weight (kDa)

6.84

Isoelectric Point (pI)

62.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 4 - 139 1.1e-60 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 312
Acc36I ACCTGC 1 cut(s) 794
AccI GTMKAC 1 cut(s) 226
AccII CGCG 1 cut(s) 610
AciI CCGC 5 cut(s) 211, 267, 596, 744, 780
AclI AACGTT 1 cut(s) 680
AclWI GGATC 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 385
AcuI CTGAAG 1 cut(s) 861
AdeI CACNNNGTG 1 cut(s) 662
AfaI GTAC 2 cut(s) 110, 535
AfeI AGCGCT 1 cut(s) 496
AfiI CCNNNNNNNGG 1 cut(s) 323
AflIII ACRYGT 1 cut(s) 608
AgsI TTSAA 3 cut(s) 650, 715, 947
AhdI GACNNNNNGTC 1 cut(s) 771
AjnI CCWGG 5 cut(s) 322, 478, 769, 805, 971
AjuI GAANNNNNNNTTGG 2 cut(s) 939, 971
AluBI AGCT 7 cut(s) 83, 124, 176, 440, 519, 530, 671
AluI AGCT 7 cut(s) 83, 124, 176, 440, 519, 530, 671
Alw26I GTCTC 2 cut(s) 589, 697
AlwI GGATC 1 cut(s) 191
AlwNI CAGNNNCTG 1 cut(s) 731
Ama87I CYCGRG 1 cut(s) 538
Aor51HI AGCGCT 1 cut(s) 496
AoxI GGCC 1 cut(s) 385
ApeKI GCWGC 4 cut(s) 80, 559, 725, 734
AspLEI GCGC 1 cut(s) 497
AsuHPI GGTGA 3 cut(s) 85, 392, 666
AvaI CYCGRG 1 cut(s) 538
BalI TGGCCA 1 cut(s) 387
BauI CACGAG 1 cut(s) 920
BbvI GCAGC 4 cut(s) 92, 571, 721, 737
BccI CCATC 2 cut(s) 191, 377
BceAI ACGGC 1 cut(s) 830
BciT130I CCWGG 5 cut(s) 324, 480, 771, 807, 973
BciVI GTATCC 1 cut(s) 909
BcoDI GTCTC 2 cut(s) 589, 697
BfaI CTAG 4 cut(s) 270, 318, 653, 890
BfmI CTRYAG 1 cut(s) 231
BfoI RGCGCY 1 cut(s) 498
BfuAI ACCTGC 1 cut(s) 794
BfuI GTATCC 1 cut(s) 909
BglII AGATCT 1 cut(s) 87
BisI GCNGC 4 cut(s) 81, 560, 726, 735
BlsI GCNGC 4 cut(s) 82, 561, 727, 736
Bme1390I CCNGG 5 cut(s) 324, 480, 771, 807, 973
BmeRI GACNNNNNGTC 1 cut(s) 771
BmeT110I CYCGRG 1 cut(s) 538
BmiI GGNNCC 4 cut(s) 328, 487, 784, 852
BmrFI CCNGG 5 cut(s) 324, 480, 771, 807, 973
BpmI CTGGAG 3 cut(s) 501, 759, 840
BpuEI CTTGAG 1 cut(s) 949
BsaJI CCNNGG 3 cut(s) 401, 478, 846
BsaWI WCCGGW 1 cut(s) 95
Bsc4I CCNNNNNNNGG 1 cut(s) 323
Bse3DI GCAATG 1 cut(s) 133
BseBI CCWGG 5 cut(s) 324, 480, 771, 807, 973
BseDI CCNNGG 3 cut(s) 401, 478, 846
BseGI GGATG 6 cut(s) 224, 353, 396, 428, 618, 765
BseLI CCNNNNNNNGG 1 cut(s) 323
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 654
BseRI GAGGAG 6 cut(s) 319, 498, 577, 762, 843, 938
BseXI GCAGC 4 cut(s) 92, 571, 721, 737
Bsh1236I CGCG 1 cut(s) 610
BshFI GGCC 1 cut(s) 387
BsiHKCI CYCGRG 1 cut(s) 538
BsiSI CCGG 1 cut(s) 96
BslFI GGGAC 3 cut(s) 25, 282, 588
BslI CCNNNNNNNGG 1 cut(s) 323
BsmAI GTCTC 2 cut(s) 589, 697
BsmBI CGTCTC 1 cut(s) 697
BsmFI GGGAC 3 cut(s) 25, 282, 588
BsmI GAATGC 1 cut(s) 24
BsnI GGCC 1 cut(s) 387
BsoBI CYCGRG 1 cut(s) 538
Bsp143I GATC 4 cut(s) 87, 183, 615, 940
Bsp19I CCATGG 1 cut(s) 401
BspACI CCGC 5 cut(s) 211, 267, 596, 744, 780
BspANI GGCC 1 cut(s) 387
BspCNI CTCAG 1 cut(s) 653
BspFNI CGCG 1 cut(s) 610
BspHI TCATGA 1 cut(s) 339
BspLI GGNNCC 4 cut(s) 328, 487, 784, 852
BspMI ACCTGC 1 cut(s) 794
BspPI GGATC 1 cut(s) 191
BspQI GCTCTTC 1 cut(s) 286
BsrDI GCAATG 1 cut(s) 133
BssECI CCNNGG 3 cut(s) 401, 478, 846
BssMI GATC 4 cut(s) 87, 183, 615, 940
BssSI CACGAG 1 cut(s) 920
BssT1I CCWWGG 1 cut(s) 401
Bst2BI CACGAG 1 cut(s) 920
Bst2UI CCWGG 5 cut(s) 324, 480, 771, 807, 973
Bst4CI ACNGT 1 cut(s) 113
Bst6I CTCTTC 2 cut(s) 49, 286
BstAPI GCANNNNNTGC 1 cut(s) 731
BstDEI CTNAG 2 cut(s) 84, 640
BstDSI CCRYGG 2 cut(s) 401, 846
BstENI CCTNNNNNAGG 1 cut(s) 321
BstF5I GGATG 6 cut(s) 224, 353, 396, 428, 618, 765
BstFNI CGCG 1 cut(s) 610
BstH2I RGCGCY 1 cut(s) 498
BstHHI GCGC 1 cut(s) 497
BstKTI GATC 4 cut(s) 90, 186, 618, 943
BstMAI GTCTC 2 cut(s) 589, 697
BstMBI GATC 4 cut(s) 87, 183, 615, 940
BstMWI GCNNNNNNNGC 6 cut(s) 80, 130, 492, 731, 734, 786
BstNI CCWGG 5 cut(s) 324, 480, 771, 807, 973
BstSCI CCNGG 5 cut(s) 322, 478, 769, 805, 971
BstSFI CTRYAG 1 cut(s) 231
BstUI CGCG 1 cut(s) 610
BstV1I GCAGC 4 cut(s) 92, 571, 721, 737
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
BsuI GTATCC 1 cut(s) 909
BsuRI GGCC 1 cut(s) 387
BtgI CCRYGG 2 cut(s) 401, 846
BtsCI GGATG 6 cut(s) 224, 353, 396, 428, 618, 765
BtsIMutI CAGTG 1 cut(s) 549
BveI ACCTGC 1 cut(s) 794
CaiI CAGNNNCTG 1 cut(s) 731
CciI TCATGA 1 cut(s) 339
CfoI GCGC 1 cut(s) 497
CseI GACGC 1 cut(s) 599
CsiI ACCWGGT 2 cut(s) 769, 971
Csp6I GTAC 2 cut(s) 109, 534
CviAII CATG 4 cut(s) 27, 340, 402, 900
CviQI GTAC 2 cut(s) 109, 534
DdeI CTNAG 2 cut(s) 84, 640
DpnI GATC 4 cut(s) 89, 185, 617, 942
DpnII GATC 4 cut(s) 87, 183, 615, 940
DraIII CACNNNGTG 1 cut(s) 662
DriI GACNNNNNGTC 1 cut(s) 771
EaeI YGGCCR 1 cut(s) 385
Eam1104I CTCTTC 2 cut(s) 49, 286
Eam1105I GACNNNNNGTC 1 cut(s) 771
EarI CTCTTC 2 cut(s) 49, 286
EciI GGCGGA 1 cut(s) 759
Eco130I CCWWGG 1 cut(s) 401
Eco47III AGCGCT 1 cut(s) 496
Eco57I CTGAAG 1 cut(s) 861
Eco88I CYCGRG 1 cut(s) 538
EcoNI CCTNNNNNAGG 1 cut(s) 321
EcoRII CCWGG 5 cut(s) 322, 478, 769, 805, 971
EcoT14I CCWWGG 1 cut(s) 401
ErhI CCWWGG 1 cut(s) 401
Esp3I CGTCTC 1 cut(s) 697
FaeI CATG 4 cut(s) 30, 343, 405, 903
FaiI YATR 8 cut(s) 28, 242, 312, 341, 403, 474, 491, 901
FaqI GGGAC 3 cut(s) 25, 282, 588
FatI CATG 4 cut(s) 26, 339, 401, 899
FblI GTMKAC 1 cut(s) 226
Fnu4HI GCNGC 4 cut(s) 81, 560, 726, 735
FokI GGATG 6 cut(s) 231, 340, 383, 415, 605, 772
Fsp4HI GCNGC 4 cut(s) 81, 560, 726, 735
FspBI CTAG 4 cut(s) 270, 318, 653, 890
GlaI GCGC 1 cut(s) 496
GluI GCNGC 4 cut(s) 81, 560, 726, 735
GsuI CTGGAG 3 cut(s) 501, 759, 840
HaeII RGCGCY 1 cut(s) 498
HaeIII GGCC 1 cut(s) 387
HapII CCGG 1 cut(s) 96
HgaI GACGC 1 cut(s) 599
HhaI GCGC 1 cut(s) 497
Hin1II CATG 4 cut(s) 30, 343, 405, 903
Hin6I GCGC 1 cut(s) 495
HinP1I GCGC 1 cut(s) 495
HinfI GANTC 5 cut(s) 343, 456, 626, 646, 711
HpaII CCGG 1 cut(s) 96
HphI GGTGA 3 cut(s) 85, 392, 666
Hpy166II GTNNAC 2 cut(s) 227, 765
Hpy188I TCNGA 5 cut(s) 129, 615, 631, 841, 937
Hpy188III TCNNGA 4 cut(s) 340, 453, 857, 944
Hpy8I GTNNAC 2 cut(s) 227, 765
Hpy99I CGWCG 2 cut(s) 69, 191
HpyAV CCTTC 2 cut(s) 586, 899
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4IV ACGT 1 cut(s) 680
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 130, 492, 731, 734, 786
HpyF3I CTNAG 2 cut(s) 84, 640
HpySE526I ACGT 1 cut(s) 680
Hsp92II CATG 4 cut(s) 30, 343, 405, 903
HspAI GCGC 1 cut(s) 495
Kzo9I GATC 4 cut(s) 87, 183, 615, 940
LguI GCTCTTC 1 cut(s) 286
LmnI GCTCC 5 cut(s) 332, 491, 502, 794, 856
Lsp1109I GCAGC 4 cut(s) 92, 571, 721, 737
MabI ACCWGGT 2 cut(s) 769, 971
MaeI CTAG 4 cut(s) 270, 318, 653, 890
MaeII ACGT 1 cut(s) 680
MaeIII GTNAC 2 cut(s) 167, 502
MalI GATC 4 cut(s) 89, 185, 617, 942
MboI GATC 4 cut(s) 87, 183, 615, 940
MboII GAAGA 5 cut(s) 66, 82, 273, 435, 731
MflI RGATCY 1 cut(s) 87
MlsI TGGCCA 1 cut(s) 387
MluCI AATT 2 cut(s) 115, 463
MluI ACGCGT 1 cut(s) 608
MluNI TGGCCA 1 cut(s) 387
MlyI GAGTC 3 cut(s) 352, 450, 620
MmeI TCCRAC 3 cut(s) 161, 357, 548
Mox20I TGGCCA 1 cut(s) 387
MscI TGGCCA 1 cut(s) 387
MseI TTAA 3 cut(s) 101, 156, 515
Msp20I TGGCCA 1 cut(s) 387
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 5 cut(s) 324, 480, 771, 807, 973
Mva1269I GAATGC 1 cut(s) 24
MvaI CCWGG 5 cut(s) 324, 480, 771, 807, 973
MvnI CGCG 1 cut(s) 610
MwoI GCNNNNNNNGC 6 cut(s) 80, 130, 492, 731, 734, 786
NcoI CCATGG 1 cut(s) 401
NdeII GATC 4 cut(s) 87, 183, 615, 940
NlaIII CATG 4 cut(s) 30, 343, 405, 903
NlaIV GGNNCC 4 cut(s) 328, 487, 784, 852
PagI TCATGA 1 cut(s) 339
PciSI GCTCTTC 1 cut(s) 286
PcsI WCGNNNNNNNCGW 2 cut(s) 20, 117
PctI GAATGC 1 cut(s) 24
PfeI GAWTC 2 cut(s) 646, 711
PkrI GCNGC 4 cut(s) 82, 561, 727, 736
PleI GAGTC 3 cut(s) 351, 450, 620
PpsI GAGTC 3 cut(s) 351, 450, 620
PsiI TTATAA 1 cut(s) 312
Psp1406I AACGTT 1 cut(s) 680
Psp6I CCWGG 5 cut(s) 322, 478, 769, 805, 971
PspGI CCWGG 5 cut(s) 322, 478, 769, 805, 971
PspN4I GGNNCC 4 cut(s) 328, 487, 784, 852
PstNI CAGNNNCTG 1 cut(s) 731
PsuI RGATCY 1 cut(s) 87
RsaI GTAC 2 cut(s) 110, 535
RsaNI GTAC 2 cut(s) 109, 534
SapI GCTCTTC 1 cut(s) 286
SaqAI TTAA 3 cut(s) 101, 156, 515
SatI GCNGC 4 cut(s) 81, 560, 726, 735
Sau3AI GATC 4 cut(s) 87, 183, 615, 940
SchI GAGTC 3 cut(s) 352, 450, 620
ScrFI CCNGG 5 cut(s) 324, 480, 771, 807, 973
SexAI ACCWGGT 2 cut(s) 769, 971
SfcI CTRYAG 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 964
SmoI CTYRAG 1 cut(s) 964
Sse9I AATT 2 cut(s) 115, 463
SsiI CCGC 5 cut(s) 211, 267, 596, 744, 780
SspMI CTAG 4 cut(s) 270, 318, 653, 890
StyD4I CCNGG 5 cut(s) 322, 478, 769, 805, 971
StyI CCWWGG 1 cut(s) 401
TaaI ACNGT 1 cut(s) 113
TaiI ACGT 1 cut(s) 683
TaqI TCGA 1 cut(s) 189
TasI AATT 2 cut(s) 115, 463
TfiI GAWTC 2 cut(s) 646, 711
Tru1I TTAA 3 cut(s) 101, 156, 515
Tru9I TTAA 3 cut(s) 101, 156, 515
TscAI CASTG 1 cut(s) 556
TseI GCWGC 4 cut(s) 80, 559, 725, 734
TspDTI ATGAA 4 cut(s) 328, 342, 435, 560
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 1 cut(s) 556
XagI CCTNNNNNAGG 1 cut(s) 321
XmiI GTMKAC 1 cut(s) 226
XspI CTAG 4 cut(s) 270, 318, 653, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.