Rh5BG208400

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0009842
Physical Location & Seq
Reverse (-)
24111609 .. 24115546
3938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG208400.1

Sequence Viewer

Length: 810 bp
ATGCTATTTTTTTTGTTATGTGCCACTAACCATCTCAAATATTTGCAGGGATGCAAGCCTGTTGAACGCAAGGACATTGTGGACGGATCAACAGCTGCTAGCCCATGCTCATCTTACCACCCAAGTAACTATGCTTCCTACAATCCAAGCCCTGGCTCATCCTCCTTCCCTAGCCCAGCATCATCTTCCTATGCTGCTAATCAGAATGTTGATGGAAGTTCCCTTATCCCATGGCTAAAACATCTCTCATCCGGATCCTCTTCAGCCTCCTCTTCCAAGCTACCAAATATTTACATCCATGGTGGTTCTATCAGTGCTCCTGTCACTCCTCCATTGAGCTCTCCAACTGCCAGAACACCCCGAATGAACACGGACTGGGACGAACAGTCTGCCCGCCCAGGATGGGGTGGGCAGCAGTACTCCTTCCTGCCATCTTCTACTCCACCAAGCCCTGGCCGGCAGATTATTCCTGATCCCGAATGGTTTTCTGGGCTTCGGATTCCCCATGGACCAACTTCTCCAACATTTAGCCTCGTCTCTTCAAACCCATTTGGGTTCAAGGAAGAGGCTTTAGCTGGTGGAGGCTCTCGAATGTGGACTCCTGGACAGAGTGGGACATGCTCTCCTGCCATTGCAGCAGGCTCTGATCACACTGCGGACATTCCAATGTCTGAGGTGATTTCTGACGAGTTTGCATTCGGATCATGCAACACAGCAGGGCTGGTTAAGGCATGGGAAGGCGAGAGGATTCATGAAGAATCCGGATCTGATGATTTAGAGCTCACTCTTGGGTGCTCAAAAACCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BES1_N

Protein Analysis

269

Amino Acids

28.38

Weight (kDa)

5.6

Isoelectric Point (pI)

56.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 14 - 82 4.3e-09 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 152, 452
AccIII TCCGGA 2 cut(s) 251, 761
AciI CCGC 2 cut(s) 394, 656
AclWI GGATC 6 cut(s) 94, 249, 262, 467, 709, 772
AcoI YGGCCR 1 cut(s) 454
AcuI CTGAAG 1 cut(s) 246
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 4 cut(s) 152, 403, 404, 452
AgsI TTSAA 3 cut(s) 65, 543, 559
AhdI GACNNNNNGTC 1 cut(s) 385
AjnI CCWGG 5 cut(s) 151, 397, 451, 601, 803
AluBI AGCT 5 cut(s) 95, 280, 339, 575, 781
AluI AGCT 5 cut(s) 95, 280, 339, 575, 781
Alw21I GWGCWC 4 cut(s) 319, 341, 783, 797
Alw26I GTCTC 1 cut(s) 541
AlwI GGATC 6 cut(s) 94, 249, 262, 467, 709, 772
AlwNI CAGNNNCTG 1 cut(s) 644
Aor13HI TCCGGA 2 cut(s) 251, 761
AoxI GGCC 1 cut(s) 454
ApeKI GCWGC 4 cut(s) 95, 194, 412, 635
AspS9I GGNCC 1 cut(s) 509
AsuHPI GGTGA 1 cut(s) 688
AsuNHI GCTAGC 1 cut(s) 98
AvaII GGWCC 1 cut(s) 509
BamHI GGATCC 1 cut(s) 254
BanII GRGCYC 2 cut(s) 341, 783
BarI GAAGNNNNNNTAC 2 cut(s) 118, 150
Bbv12I GWGCWC 4 cut(s) 319, 341, 783, 797
BbvI GCAGC 4 cut(s) 82, 181, 424, 647
BccI CCATC 4 cut(s) 39, 206, 396, 439
BcgI CGANNNNNNTGC 2 cut(s) 371, 405
BciT130I CCWGG 5 cut(s) 153, 399, 453, 603, 805
BclI TGATCA 1 cut(s) 646
BcoDI GTCTC 1 cut(s) 541
BfaI CTAG 2 cut(s) 99, 171
BisI GCNGC 4 cut(s) 96, 195, 413, 636
BlsI GCNGC 4 cut(s) 97, 196, 414, 637
BmcAI AGTACT 1 cut(s) 419
Bme1390I CCNGG 5 cut(s) 153, 399, 453, 603, 805
Bme18I GGWCC 1 cut(s) 509
BmeRI GACNNNNNGTC 1 cut(s) 385
BmgT120I GGNCC 1 cut(s) 509
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 5 cut(s) 153, 399, 453, 603, 805
BmrI ACTGGG 1 cut(s) 385
BmsI GCATC 2 cut(s) 41, 188
BmtI GCTAGC 1 cut(s) 102
BmuI ACTGGG 1 cut(s) 385
BsaJI CCNNGG 6 cut(s) 151, 230, 298, 397, 451, 505
BsaWI WCCGGW 2 cut(s) 251, 761
BsaXI ACNNNNNCTCC 2 cut(s) 607, 637
Bsc4I CCNNNNNNNGG 4 cut(s) 152, 403, 404, 452
Bse118I RCCGGY 1 cut(s) 456
Bse1I ACTGG 1 cut(s) 380
Bse3DI GCAATG 1 cut(s) 630
BseAI TCCGGA 2 cut(s) 251, 761
BseBI CCWGG 5 cut(s) 153, 399, 453, 603, 805
BseDI CCNNGG 6 cut(s) 151, 230, 298, 397, 451, 505
BseGI GGATG 5 cut(s) 56, 158, 248, 294, 407
BseLI CCNNNNNNNGG 4 cut(s) 152, 403, 404, 452
BseMI GCAATG 1 cut(s) 630
BseMII CTCAG 1 cut(s) 663
BseNI ACTGG 1 cut(s) 380
BseRI GAGGAG 2 cut(s) 259, 318
BseXI GCAGC 4 cut(s) 82, 181, 424, 647
BseYI CCCAGC 1 cut(s) 175
BshFI GGCC 1 cut(s) 456
BsiHKAI GWGCWC 4 cut(s) 319, 341, 783, 797
BsiSI CCGG 3 cut(s) 252, 457, 762
BslFI GGGAC 2 cut(s) 392, 628
BslI CCNNNNNNNGG 4 cut(s) 152, 403, 404, 452
BsmAI GTCTC 1 cut(s) 541
BsmBI CGTCTC 1 cut(s) 541
BsmFI GGGAC 2 cut(s) 392, 628
BsmI GAATGC 1 cut(s) 695
BsnI GGCC 1 cut(s) 456
Bsp1286I GDGCHC 4 cut(s) 319, 341, 783, 797
Bsp13I TCCGGA 2 cut(s) 251, 761
Bsp143I GATC 6 cut(s) 86, 254, 472, 646, 701, 764
Bsp19I CCATGG 3 cut(s) 230, 298, 505
BspACI CCGC 2 cut(s) 394, 656
BspANI GGCC 1 cut(s) 456
BspCNI CTCAG 1 cut(s) 664
BspEI TCCGGA 2 cut(s) 251, 761
BspHI TCATGA 1 cut(s) 751
BspLI GGNNCC 1 cut(s) 256
BspOI GCTAGC 1 cut(s) 102
BspPI GGATC 6 cut(s) 94, 249, 262, 467, 709, 772
BsrDI GCAATG 1 cut(s) 630
BsrFI RCCGGY 1 cut(s) 456
BsrI ACTGG 1 cut(s) 380
BssAI RCCGGY 1 cut(s) 456
BssECI CCNNGG 6 cut(s) 151, 230, 298, 397, 451, 505
BssMI GATC 6 cut(s) 86, 254, 472, 646, 701, 764
BssT1I CCWWGG 3 cut(s) 230, 298, 505
Bst2UI CCWGG 5 cut(s) 153, 399, 453, 603, 805
Bst4CI ACNGT 1 cut(s) 387
Bst6I CTCTTC 4 cut(s) 265, 277, 544, 558
BstC8I GCNNGC 5 cut(s) 56, 100, 394, 458, 640
BstDEI CTNAG 1 cut(s) 672
BstDSI CCRYGG 3 cut(s) 230, 298, 505
BstF5I GGATG 5 cut(s) 56, 158, 248, 294, 407
BstKTI GATC 6 cut(s) 89, 257, 475, 649, 704, 767
BstMAI GTCTC 1 cut(s) 541
BstMBI GATC 6 cut(s) 86, 254, 472, 646, 701, 764
BstMWI GCNNNNNNNGC 1 cut(s) 635
BstNI CCWGG 5 cut(s) 153, 399, 453, 603, 805
BstNSI RCATGY 1 cut(s) 621
BstSCI CCNGG 5 cut(s) 151, 397, 451, 601, 803
BstV1I GCAGC 4 cut(s) 82, 181, 424, 647
BstX2I RGATCY 2 cut(s) 254, 764
BstYI RGATCY 2 cut(s) 254, 764
BsuRI GGCC 1 cut(s) 456
BtgI CCRYGG 3 cut(s) 230, 298, 505
BtsCI GGATG 5 cut(s) 56, 158, 248, 294, 407
BtsI GCAGTG 1 cut(s) 651
BtsIMutI CAGTG 2 cut(s) 319, 651
Cac8I GCNNGC 5 cut(s) 56, 100, 394, 458, 640
CaiI CAGNNNCTG 1 cut(s) 644
CciI TCATGA 1 cut(s) 751
Cfr10I RCCGGY 1 cut(s) 456
Cfr13I GGNCC 1 cut(s) 509
CsiI ACCWGGT 1 cut(s) 803
Csp6I GTAC 1 cut(s) 418
CviAII CATG 8 cut(s) 105, 231, 299, 506, 618, 705, 732, 752
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 1 cut(s) 672
DpnI GATC 6 cut(s) 88, 256, 474, 648, 703, 766
DpnII GATC 6 cut(s) 86, 254, 472, 646, 701, 764
DriI GACNNNNNGTC 1 cut(s) 385
EaeI YGGCCR 1 cut(s) 454
Eam1104I CTCTTC 4 cut(s) 265, 277, 544, 558
Eam1105I GACNNNNNGTC 1 cut(s) 385
EarI CTCTTC 4 cut(s) 265, 277, 544, 558
Ecl136II GAGCTC 2 cut(s) 339, 781
Eco130I CCWWGG 3 cut(s) 230, 298, 505
Eco24I GRGCYC 2 cut(s) 341, 783
Eco47I GGWCC 1 cut(s) 509
Eco53kI GAGCTC 2 cut(s) 339, 781
Eco57I CTGAAG 1 cut(s) 246
EcoICRI GAGCTC 2 cut(s) 339, 781
EcoRII CCWGG 5 cut(s) 151, 397, 451, 601, 803
EcoT14I CCWWGG 3 cut(s) 230, 298, 505
EcoT38I GRGCYC 2 cut(s) 341, 783
ErhI CCWWGG 3 cut(s) 230, 298, 505
Esp3I CGTCTC 1 cut(s) 541
FaeI CATG 8 cut(s) 108, 234, 302, 509, 621, 708, 735, 755
FaqI GGGAC 2 cut(s) 392, 628
FatI CATG 8 cut(s) 104, 230, 298, 505, 617, 704, 731, 751
FauI CCCGC 1 cut(s) 401
FbaI TGATCA 1 cut(s) 646
Fnu4HI GCNGC 4 cut(s) 96, 195, 413, 636
FokI GGATG 5 cut(s) 63, 145, 235, 281, 414
FriOI GRGCYC 2 cut(s) 341, 783
Fsp4HI GCNGC 4 cut(s) 96, 195, 413, 636
FspBI CTAG 2 cut(s) 99, 171
GluI GCNGC 4 cut(s) 96, 195, 413, 636
GsaI CCCAGC 1 cut(s) 179
HaeIII GGCC 1 cut(s) 456
HapII CCGG 3 cut(s) 252, 457, 762
Hin1II CATG 8 cut(s) 108, 234, 302, 509, 621, 708, 735, 755
HinfI GANTC 4 cut(s) 499, 598, 748, 758
HpaII CCGG 3 cut(s) 252, 457, 762
HphI GGTGA 1 cut(s) 688
Hpy166II GTNNAC 2 cut(s) 82, 597
Hpy188I TCNGA 7 cut(s) 204, 498, 646, 673, 685, 701, 769
Hpy188III TCNNGA 6 cut(s) 252, 470, 476, 588, 752, 762
Hpy8I GTNNAC 2 cut(s) 82, 597
HpyAV CCTTC 3 cut(s) 175, 433, 731
HpyCH4III ACNGT 1 cut(s) 387
HpyCH4V TGCA 5 cut(s) 46, 54, 635, 695, 708
HpyF10VI GCNNNNNNNGC 1 cut(s) 635
HpyF3I CTNAG 1 cut(s) 672
Hsp92II CATG 8 cut(s) 108, 234, 302, 509, 621, 708, 735, 755
Kpn2I TCCGGA 2 cut(s) 251, 761
KroI GCCGGC 1 cut(s) 456
KroNI GCCGGC 1 cut(s) 458
Ksp22I TGATCA 1 cut(s) 646
Kzo9I GATC 6 cut(s) 86, 254, 472, 646, 701, 764
LmnI GCTCC 1 cut(s) 322
Lsp1109I GCAGC 4 cut(s) 82, 181, 424, 647
LweI GCATC 2 cut(s) 41, 188
MabI ACCWGGT 1 cut(s) 803
MaeI CTAG 2 cut(s) 99, 171
MaeIII GTNAC 2 cut(s) 125, 322
MalI GATC 6 cut(s) 88, 256, 474, 648, 703, 766
MboI GATC 6 cut(s) 86, 254, 472, 646, 701, 764
MboII GAAGA 7 cut(s) 177, 252, 264, 426, 531, 575, 767
MflI RGATCY 2 cut(s) 254, 764
MhlI GDGCHC 4 cut(s) 319, 341, 783, 797
MlyI GAGTC 1 cut(s) 592
MmeI TCCRAC 2 cut(s) 368, 545
MroI TCCGGA 2 cut(s) 251, 761
MroNI GCCGGC 1 cut(s) 456
MseI TTAA 1 cut(s) 726
MslI CAYNNNNRTG 1 cut(s) 665
MspA1I CMGCKG 1 cut(s) 95
MspI CCGG 3 cut(s) 252, 457, 762
MspR9I CCNGG 5 cut(s) 153, 399, 453, 603, 805
Mva1269I GAATGC 1 cut(s) 695
MvaI CCWGG 5 cut(s) 153, 399, 453, 603, 805
MwoI GCNNNNNNNGC 1 cut(s) 635
NaeI GCCGGC 1 cut(s) 458
NcoI CCATGG 3 cut(s) 230, 298, 505
NdeII GATC 6 cut(s) 86, 254, 472, 646, 701, 764
NgoMIV GCCGGC 1 cut(s) 456
NheI GCTAGC 1 cut(s) 98
NlaIII CATG 8 cut(s) 108, 234, 302, 509, 621, 708, 735, 755
NlaIV GGNNCC 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 322
NspI RCATGY 1 cut(s) 621
PagI TCATGA 1 cut(s) 751
PctI GAATGC 1 cut(s) 695
PdiI GCCGGC 1 cut(s) 458
PfeI GAWTC 3 cut(s) 499, 748, 758
PflMI CCANNNNNTGG 2 cut(s) 152, 452
PfoI TCCNGGA 1 cut(s) 601
PkrI GCNGC 4 cut(s) 97, 196, 414, 637
PleI GAGTC 1 cut(s) 592
PpsI GAGTC 1 cut(s) 592
Psp124BI GAGCTC 2 cut(s) 341, 783
Psp6I CCWGG 5 cut(s) 151, 397, 451, 601, 803
PspFI CCCAGC 1 cut(s) 175
PspGI CCWGG 5 cut(s) 151, 397, 451, 601, 803
PspN4I GGNNCC 1 cut(s) 256
PspPI GGNCC 1 cut(s) 509
PstNI CAGNNNCTG 1 cut(s) 644
PsuI RGATCY 2 cut(s) 254, 764
PvuII CAGCTG 1 cut(s) 95
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
RseI CAYNNNNRTG 1 cut(s) 665
SacI GAGCTC 2 cut(s) 341, 783
SaqAI TTAA 1 cut(s) 726
SatI GCNGC 4 cut(s) 96, 195, 413, 636
Sau3AI GATC 6 cut(s) 86, 254, 472, 646, 701, 764
Sau96I GGNCC 1 cut(s) 509
ScaI AGTACT 1 cut(s) 419
SchI GAGTC 1 cut(s) 592
ScrFI CCNGG 5 cut(s) 153, 399, 453, 603, 805
SduI GDGCHC 4 cut(s) 319, 341, 783, 797
SetI ASST 7 cut(s) 97, 282, 341, 577, 678, 783, 809
SexAI ACCWGGT 1 cut(s) 803
SfaNI GCATC 2 cut(s) 41, 188
SinI GGWCC 1 cut(s) 509
SmiMI CAYNNNNRTG 1 cut(s) 665
SsiI CCGC 2 cut(s) 394, 656
SspI AATATT 2 cut(s) 41, 289
SspMI CTAG 2 cut(s) 99, 171
SstI GAGCTC 2 cut(s) 341, 783
StyD4I CCNGG 5 cut(s) 151, 397, 451, 601, 803
StyI CCWWGG 3 cut(s) 230, 298, 505
TaaI ACNGT 1 cut(s) 387
TaqI TCGA 1 cut(s) 589
TatI WGTACW 1 cut(s) 417
TfiI GAWTC 3 cut(s) 499, 748, 758
Tru1I TTAA 1 cut(s) 726
Tru9I TTAA 1 cut(s) 726
TscAI CASTG 2 cut(s) 319, 658
TseFI GTSAC 1 cut(s) 322
TseI GCWGC 4 cut(s) 95, 194, 412, 635
Tsp45I GTSAC 1 cut(s) 322
TspDTI ATGAA 3 cut(s) 380, 740, 768
TspGWI ACGGA 2 cut(s) 99, 386
TspRI CASTG 2 cut(s) 319, 658
Van91I CCANNNNNTGG 2 cut(s) 152, 452
VpaK11BI GGWCC 1 cut(s) 509
XceI RCATGY 1 cut(s) 621
XspI CTAG 2 cut(s) 99, 171
ZrmI AGTACT 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.