Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003368.1

Orthogroup ID

OG0009842

Physical Location & Seq

Genomic Coordinates Forward (+)

14931 .. 18232

Gene Structure 3302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003368.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

atgatagagacggttacgggaccggagcaccgaatgtggacacgtgtcgaggagccgaacggttttgtcagagtgacggttgcgaggaatgagtataacgcttctgggattaggccattagggggaacgtgttggggtttgggtcaacttggtagcatcttcgagaagtgcccatgtgcatgcagatccgatcggattcgatcaccaaacctcttcgccaaccgcaatattccccgatcgggatgcaagcctgttgaacgcaaggacattgtggacggatcaacagctgctagcccatgctcatcttaccacccaagtaactatgcttcctacaatccaagccctggctcatcctccttccctagcccagcatcatcttcctatgctgctaatcagaatgttgatggaagttcccttatcccatggctaaaacatctctcatccggatcctcttcagcctcctcttccaagctaccaaatatttacatccatggtggttctatcagtgctcctgtcactcctccattgagctctccaacagccagaacaccccgaatgaacacggactgggacgaacagtctgcccgcccaggatggggtgggcagcagtactccttcctgccatcttctactccaccaagccctggccggcagattattcctgatcccgaatggttttctgggcttcggattccccatggaccaacttctccaacatttagcctcgtctcttcaaacccatttgggttcaaggaagaggctttagctggtggaggctctcgaatgtggactcctggacagagtgggacatgctctcctgccattgcagcaggctctgatcacactgcggacattccaatgtctgaggtgatttctgacgagtttgcattcggatcatgcaacacagcagggctggttaaggcatgggaaggcgagaggattcatgaagaatccggatctgatgatttagagctcactcttgggtgctcaaaaaccaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BES1_N

Protein Analysis

333

Amino Acids

35.4

Weight (kDa)

6.18

Isoelectric Point (pI)

57.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78700
fragaria_vesca	FvH4_3g17990 FvH4_3g17990 FvH4_3g17990 FvH4_3g17990
malus_domestica	MD03G1246200.v1.1 MD11G1267200.v1.1
prunus_persica	Prupe.4G158400_v2.0.a1 Prupe.4G158400_v2.0.a1
pyrus_communis	pycom03g19520 pycom11g23500
rosa_chinensis	RchiOBHm_Chr5g0030041
rosa_laevigata	RLG00000033211
rosa_multiflora	Rmu_sc0003368.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049980
rosa_rugosa	Rorug05G0116500
rosa_samantha	Rh5AG209500 Rh5BG208400 Rh5CG232200 Rh5DG212800
rosa_wichuraiana	Rw5G019080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	344, 644
AccIII	TCCGGA	2 cut(s)	443, 953
AciI	CCGC	3 cut(s)	223, 586, 848
AclWI	GGATC	7 cut(s)	180, 286, 441, 454, 659, 901, 964
AcoI	YGGCCR	1 cut(s)	646
AcuI	CTGAAG	1 cut(s)	438
AcvI	CACGTG	1 cut(s)	44
AfaI	GTAC	1 cut(s)	611
AfiI	CCNNNNNNNGG	6 cut(s)	122, 239, 344, 595, 596, 644
AflIII	ACRYGT	3 cut(s)	41, 43, 128
AgsI	TTSAA	3 cut(s)	257, 735, 751
AhdI	GACNNNNNGTC	1 cut(s)	577
AjnI	CCWGG	5 cut(s)	343, 589, 643, 793, 995
AluBI	AGCT	5 cut(s)	287, 472, 531, 767, 973
AluI	AGCT	5 cut(s)	287, 472, 531, 767, 973
Alw21I	GWGCWC	5 cut(s)	30, 511, 533, 975, 989
Alw26I	GTCTC	2 cut(s)	2, 733
AlwI	GGATC	7 cut(s)	180, 286, 441, 454, 659, 901, 964
AlwNI	CAGNNNCTG	1 cut(s)	836
Aor13HI	TCCGGA	2 cut(s)	443, 953
AoxI	GGCC	2 cut(s)	113, 646
ApeKI	GCWGC	4 cut(s)	287, 386, 604, 827
AspS9I	GGNCC	2 cut(s)	20, 701
AsuHPI	GGTGA	2 cut(s)	195, 880
AsuNHI	GCTAGC	1 cut(s)	290
AvaII	GGWCC	2 cut(s)	20, 701
BaeGI	GKGCMC	1 cut(s)	173
BamHI	GGATCC	1 cut(s)	446
BanII	GRGCYC	2 cut(s)	533, 975
BarI	GAAGNNNNNNTAC	2 cut(s)	310, 342
BbrPI	CACGTG	1 cut(s)	44
Bbv12I	GWGCWC	5 cut(s)	30, 511, 533, 975, 989
BbvI	GCAGC	4 cut(s)	274, 373, 616, 839
BccI	CCATC	3 cut(s)	398, 588, 631
BcgI	CGANNNNNNTGC	4 cut(s)	225, 259, 563, 597
BciT130I	CCWGG	5 cut(s)	345, 591, 645, 795, 997
BclI	TGATCA	1 cut(s)	838
BcoDI	GTCTC	2 cut(s)	2, 733
BfaI	CTAG	2 cut(s)	291, 363
BisI	GCNGC	4 cut(s)	288, 387, 605, 828
BlsI	GCNGC	4 cut(s)	289, 388, 606, 829
BmcAI	AGTACT	1 cut(s)	611
Bme1390I	CCNGG	5 cut(s)	345, 591, 645, 795, 997
Bme18I	GGWCC	2 cut(s)	20, 701
BmeRI	GACNNNNNGTC	1 cut(s)	577
BmgT120I	GGNCC	2 cut(s)	20, 701
BmiI	GGNNCC	3 cut(s)	21, 54, 448
BmrFI	CCNGG	5 cut(s)	345, 591, 645, 795, 997
BmrI	ACTGGG	1 cut(s)	577
BmsI	GCATC	3 cut(s)	165, 233, 380
BmtI	GCTAGC	1 cut(s)	294
BmuI	ACTGGG	1 cut(s)	577
BoxI	GACNNNNGTC	1 cut(s)	44
BsaAI	YACGTR	1 cut(s)	44
BsaJI	CCNNGG	6 cut(s)	343, 422, 490, 589, 643, 697
BsaWI	WCCGGW	3 cut(s)	22, 443, 953
BsaXI	ACNNNNNCTCC	2 cut(s)	799, 829
Bsc4I	CCNNNNNNNGG	6 cut(s)	122, 239, 344, 595, 596, 644
Bse118I	RCCGGY	1 cut(s)	648
Bse1I	ACTGG	1 cut(s)	572
Bse3DI	GCAATG	1 cut(s)	822
BseAI	TCCGGA	2 cut(s)	443, 953
BseBI	CCWGG	5 cut(s)	345, 591, 645, 795, 997
BseDI	CCNNGG	6 cut(s)	343, 422, 490, 589, 643, 697
BseGI	GGATG	5 cut(s)	248, 350, 440, 486, 599
BseLI	CCNNNNNNNGG	6 cut(s)	122, 239, 344, 595, 596, 644
BseMI	GCAATG	1 cut(s)	822
BseMII	CTCAG	1 cut(s)	855
BseNI	ACTGG	1 cut(s)	572
BseRI	GAGGAG	3 cut(s)	65, 451, 510
BseSI	GKGCMC	1 cut(s)	173
BseXI	GCAGC	4 cut(s)	274, 373, 616, 839
BseYI	CCCAGC	1 cut(s)	367
Bsh1285I	CGRYCG	2 cut(s)	193, 239
BshFI	GGCC	2 cut(s)	115, 648
BsiEI	CGRYCG	2 cut(s)	193, 239
BsiHKAI	GWGCWC	5 cut(s)	30, 511, 533, 975, 989
BsiSI	CCGG	4 cut(s)	23, 444, 649, 954
BslFI	GGGAC	3 cut(s)	33, 584, 820
BslI	CCNNNNNNNGG	6 cut(s)	122, 239, 344, 595, 596, 644
BsmAI	GTCTC	2 cut(s)	2, 733
BsmBI	CGTCTC	2 cut(s)	2, 733
BsmFI	GGGAC	3 cut(s)	33, 584, 820
BsmI	GAATGC	1 cut(s)	887
BsnI	GGCC	2 cut(s)	115, 648
Bsp1286I	GDGCHC	6 cut(s)	30, 173, 511, 533, 975, 989
Bsp13I	TCCGGA	2 cut(s)	443, 953
Bsp19I	CCATGG	3 cut(s)	422, 490, 697
BspACI	CCGC	3 cut(s)	223, 586, 848
BspANI	GGCC	2 cut(s)	115, 648
BspCNI	CTCAG	1 cut(s)	856
BspEI	TCCGGA	2 cut(s)	443, 953
BspHI	TCATGA	1 cut(s)	943
BspLI	GGNNCC	3 cut(s)	21, 54, 448
BspOI	GCTAGC	1 cut(s)	294
BspPI	GGATC	7 cut(s)	180, 286, 441, 454, 659, 901, 964
BsrDI	GCAATG	1 cut(s)	822
BsrFI	RCCGGY	1 cut(s)	648
BsrI	ACTGG	1 cut(s)	572
BssAI	RCCGGY	1 cut(s)	648
BssECI	CCNNGG	6 cut(s)	343, 422, 490, 589, 643, 697
BssT1I	CCWWGG	3 cut(s)	422, 490, 697
Bst2UI	CCWGG	5 cut(s)	345, 591, 645, 795, 997
Bst4CI	ACNGT	4 cut(s)	13, 62, 79, 579
Bst6I	CTCTTC	5 cut(s)	218, 457, 469, 736, 750
BstBAI	YACGTR	1 cut(s)	44
BstC8I	GCNNGC	6 cut(s)	181, 248, 292, 586, 650, 832
BstDEI	CTNAG	1 cut(s)	864
BstDSI	CCRYGG	3 cut(s)	422, 490, 697
BstF5I	GGATG	5 cut(s)	248, 350, 440, 486, 599
BstMAI	GTCTC	2 cut(s)	2, 733
BstMCI	CGRYCG	2 cut(s)	193, 239
BstMWI	GCNNNNNNNGC	1 cut(s)	827
BstNI	CCWGG	5 cut(s)	345, 591, 645, 795, 997
BstNSI	RCATGY	2 cut(s)	183, 813
BstPAI	GACNNNNGTC	1 cut(s)	44
BstSCI	CCNGG	5 cut(s)	343, 589, 643, 793, 995
BstSLI	GKGCMC	1 cut(s)	173
BstV1I	GCAGC	4 cut(s)	274, 373, 616, 839
BstX2I	RGATCY	3 cut(s)	185, 446, 956
BstYI	RGATCY	3 cut(s)	185, 446, 956
BsuRI	GGCC	2 cut(s)	115, 648
BtgI	CCRYGG	3 cut(s)	422, 490, 697
BtsCI	GGATG	5 cut(s)	248, 350, 440, 486, 599
BtsI	GCAGTG	1 cut(s)	843
BtsIMutI	CAGTG	2 cut(s)	511, 843
Cac8I	GCNNGC	6 cut(s)	181, 248, 292, 586, 650, 832
CaiI	CAGNNNCTG	1 cut(s)	836
CciI	TCATGA	1 cut(s)	943
Cfr10I	RCCGGY	1 cut(s)	648
Cfr13I	GGNCC	2 cut(s)	20, 701
CsiI	ACCWGGT	1 cut(s)	995
Csp6I	GTAC	1 cut(s)	610
CviQI	GTAC	1 cut(s)	610
DdeI	CTNAG	1 cut(s)	864
DriI	GACNNNNNGTC	1 cut(s)	577
EaeI	YGGCCR	1 cut(s)	646
Eam1104I	CTCTTC	5 cut(s)	218, 457, 469, 736, 750
Eam1105I	GACNNNNNGTC	1 cut(s)	577
EarI	CTCTTC	5 cut(s)	218, 457, 469, 736, 750
Ecl136II	GAGCTC	2 cut(s)	531, 973
Eco130I	CCWWGG	3 cut(s)	422, 490, 697
Eco24I	GRGCYC	2 cut(s)	533, 975
Eco47I	GGWCC	2 cut(s)	20, 701
Eco53kI	GAGCTC	2 cut(s)	531, 973
Eco57I	CTGAAG	1 cut(s)	438
Eco72I	CACGTG	1 cut(s)	44
EcoICRI	GAGCTC	2 cut(s)	531, 973
EcoRII	CCWGG	5 cut(s)	343, 589, 643, 793, 995
EcoT14I	CCWWGG	3 cut(s)	422, 490, 697
EcoT38I	GRGCYC	2 cut(s)	533, 975
ErhI	CCWWGG	3 cut(s)	422, 490, 697
Esp3I	CGTCTC	2 cut(s)	2, 733
FaqI	GGGAC	3 cut(s)	33, 584, 820
FauI	CCCGC	1 cut(s)	593
FbaI	TGATCA	1 cut(s)	838
Fnu4HI	GCNGC	4 cut(s)	288, 387, 605, 828
FokI	GGATG	5 cut(s)	255, 337, 427, 473, 606
FriOI	GRGCYC	2 cut(s)	533, 975
Fsp4HI	GCNGC	4 cut(s)	288, 387, 605, 828
FspBI	CTAG	2 cut(s)	291, 363
GluI	GCNGC	4 cut(s)	288, 387, 605, 828
GsaI	CCCAGC	1 cut(s)	371
HaeIII	GGCC	2 cut(s)	115, 648
HapII	CCGG	4 cut(s)	23, 444, 649, 954
HincII	GTYRAC	1 cut(s)	146
HindII	GTYRAC	1 cut(s)	146
HinfI	GANTC	5 cut(s)	196, 691, 790, 940, 950
HpaII	CCGG	4 cut(s)	23, 444, 649, 954
HphI	GGTGA	2 cut(s)	195, 880
Hpy166II	GTNNAC	4 cut(s)	39, 146, 274, 789
Hpy188III	TCNNGA	8 cut(s)	163, 240, 444, 662, 668, 780, 944, 954
Hpy8I	GTNNAC	4 cut(s)	39, 146, 274, 789
HpyAV	CCTTC	3 cut(s)	367, 625, 923
HpyCH4III	ACNGT	4 cut(s)	13, 62, 79, 579
HpyCH4IV	ACGT	2 cut(s)	43, 128
HpyCH4V	TGCA	6 cut(s)	179, 183, 246, 827, 887, 900
HpyF10VI	GCNNNNNNNGC	1 cut(s)	827
HpyF3I	CTNAG	1 cut(s)	864
HpySE526I	ACGT	2 cut(s)	43, 128
Kpn2I	TCCGGA	2 cut(s)	443, 953
KroI	GCCGGC	1 cut(s)	648
KroNI	GCCGGC	1 cut(s)	650
Ksp22I	TGATCA	1 cut(s)	838
LmnI	GCTCC	3 cut(s)	25, 52, 514
Lsp1109I	GCAGC	4 cut(s)	274, 373, 616, 839
LweI	GCATC	3 cut(s)	165, 233, 380
MabI	ACCWGGT	1 cut(s)	995
MaeI	CTAG	2 cut(s)	291, 363
MaeII	ACGT	2 cut(s)	43, 128
MaeIII	GTNAC	4 cut(s)	13, 73, 317, 514
MboII	GAAGA	9 cut(s)	151, 205, 369, 444, 456, 618, 723, 767, 959
MflI	RGATCY	3 cut(s)	185, 446, 956
MhlI	GDGCHC	6 cut(s)	30, 173, 511, 533, 975, 989
MlyI	GAGTC	1 cut(s)	784
MmeI	TCCRAC	2 cut(s)	560, 737
MroI	TCCGGA	2 cut(s)	443, 953
MroNI	GCCGGC	1 cut(s)	648
MseI	TTAA	1 cut(s)	918
MslI	CAYNNNNRTG	2 cut(s)	178, 857
MspA1I	CMGCKG	1 cut(s)	287
MspI	CCGG	4 cut(s)	23, 444, 649, 954
MspR9I	CCNGG	5 cut(s)	345, 591, 645, 795, 997
Mva1269I	GAATGC	1 cut(s)	887
MvaI	CCWGG	5 cut(s)	345, 591, 645, 795, 997
MwoI	GCNNNNNNNGC	1 cut(s)	827
NaeI	GCCGGC	1 cut(s)	650
NcoI	CCATGG	3 cut(s)	422, 490, 697
NgoMIV	GCCGGC	1 cut(s)	648
NheI	GCTAGC	1 cut(s)	290
NlaIV	GGNNCC	3 cut(s)	21, 54, 448
NmuCI	GTSAC	2 cut(s)	73, 514
NspI	RCATGY	2 cut(s)	183, 813
PaeI	GCATGC	1 cut(s)	183
PagI	TCATGA	1 cut(s)	943
PctI	GAATGC	1 cut(s)	887
PdiI	GCCGGC	1 cut(s)	650
PfeI	GAWTC	4 cut(s)	196, 691, 940, 950
PflMI	CCANNNNNTGG	2 cut(s)	344, 644
PfoI	TCCNGGA	1 cut(s)	793
PkrI	GCNGC	4 cut(s)	289, 388, 606, 829
Ple19I	CGATCG	2 cut(s)	193, 239
PleI	GAGTC	1 cut(s)	784
PmaCI	CACGTG	1 cut(s)	44
PmlI	CACGTG	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	784
Ppu21I	YACGTR	1 cut(s)	44
PshAI	GACNNNNGTC	1 cut(s)	44
Psp124BI	GAGCTC	2 cut(s)	533, 975
Psp6I	CCWGG	5 cut(s)	343, 589, 643, 793, 995
PspCI	CACGTG	1 cut(s)	44
PspFI	CCCAGC	1 cut(s)	367
PspGI	CCWGG	5 cut(s)	343, 589, 643, 793, 995
PspN4I	GGNNCC	3 cut(s)	21, 54, 448
PspPI	GGNCC	2 cut(s)	20, 701
PstNI	CAGNNNCTG	1 cut(s)	836
PsuI	RGATCY	3 cut(s)	185, 446, 956
PvuI	CGATCG	2 cut(s)	193, 239
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	611
RsaNI	GTAC	1 cut(s)	610
RseI	CAYNNNNRTG	2 cut(s)	178, 857
SacI	GAGCTC	2 cut(s)	533, 975
SaqAI	TTAA	1 cut(s)	918
SatI	GCNGC	4 cut(s)	288, 387, 605, 828
Sau96I	GGNCC	2 cut(s)	20, 701
ScaI	AGTACT	1 cut(s)	611
SchI	GAGTC	1 cut(s)	784
ScrFI	CCNGG	5 cut(s)	345, 591, 645, 795, 997
SduI	GDGCHC	6 cut(s)	30, 173, 511, 533, 975, 989
SexAI	ACCWGGT	1 cut(s)	995
SfaNI	GCATC	3 cut(s)	165, 233, 380
SinI	GGWCC	2 cut(s)	20, 701
SmiMI	CAYNNNNRTG	2 cut(s)	178, 857
SphI	GCATGC	1 cut(s)	183
SsiI	CCGC	3 cut(s)	223, 586, 848
SspI	AATATT	2 cut(s)	229, 481
SspMI	CTAG	2 cut(s)	291, 363
SstI	GAGCTC	2 cut(s)	533, 975
StyD4I	CCNGG	5 cut(s)	343, 589, 643, 793, 995
StyI	CCWWGG	3 cut(s)	422, 490, 697
TaaI	ACNGT	4 cut(s)	13, 62, 79, 579
TaiI	ACGT	2 cut(s)	46, 131
TaqI	TCGA	4 cut(s)	48, 162, 199, 781
TatI	WGTACW	1 cut(s)	609
TfiI	GAWTC	4 cut(s)	196, 691, 940, 950
Tru1I	TTAA	1 cut(s)	918
Tru9I	TTAA	1 cut(s)	918
TscAI	CASTG	2 cut(s)	511, 850
TseFI	GTSAC	2 cut(s)	73, 514
TseI	GCWGC	4 cut(s)	287, 386, 604, 827
Tsp45I	GTSAC	2 cut(s)	73, 514
TspDTI	ATGAA	3 cut(s)	572, 932, 960
TspGWI	ACGGA	2 cut(s)	291, 578
TspRI	CASTG	2 cut(s)	511, 850
Van91I	CCANNNNNTGG	2 cut(s)	344, 644
VpaK11BI	GGWCC	2 cut(s)	20, 701
XceI	RCATGY	2 cut(s)	183, 813
XspI	CTAG	2 cut(s)	291, 363
ZrmI	AGTACT	1 cut(s)	611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.