MD11G1267200.v1.1

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0009842
Physical Location & Seq
Forward (+)
38214764 .. 38218850
4087 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1267200.v1.1.491

Sequence Viewer

Length: 975 bp
ATGACGTCGGGGACTCGAATGCCGACGTGGAAGGAGAGAGAGAACAACAAGAGAAGAGAGAGGAGGCGGAGGGCCATAGCGGCGAAGATCTTTGCCGGCCTGAGAATGTACGGCAACTACAAGCTCCCCAAGCACTGCGACAACAATGAGGTCCTCAAGGCTCTCTGCGACGAGGCCGGTTGGACCGTCGAATTGGACGGCACCACTTACCGCAAGGGATGCAAGCCGGTCGAACACATGGACGTGATGGGTGGATCCACATTAGCTAGCCCAAGCTCGTCTTTCCTCCCAAGTAATTGTGCTTCCTACAATCCAAGCCCAGGCTCTTCCTCCTTCCCTAGCCCAACATCATCTTCCTATGCTACTAACCCGAATGCTGATGGCAGGTCCCTTATCCCATGGCTCAAAAATCTCTCCTCTGCATCCTCTTCGGCCTCCTCTTCCAAACTACCGAACCTCTACATCCATGGCGGCTCTATCAGTGCCCCTGTTACCCCTCCATTAAGCTCCCCAACTGCCAGGACACCGAGAATGAGAATTGACTGGGATGACCAGTGTGCTCCACCAGGCTGGGCTAGGCAGCAATTCCCCTTCATGCCATCTTCTACTCCACCAAGCCCTGGACGGCAGATTGTTCCTGATCCAGAATGGTTTGCTGGGATTCCGGTTCCCCGTGGACCAAATTCTCCAACATTCAGCCTTGTCTCTTTAAACCCATTTGGGTTTAAGGACGAGGTTTTAGCTGGTGGTGGATCCCGCATGTGGACTCCCGGGCAAAGCGGGACATGCTCTCCTGCCATTGCAGCTGGCTCTGATCACACTGCTGACATCCCCATGTCTGAGGTGATTTCAGATGAGTTTGCATTTGGATGCAATACAACAGGGCTGGTTAAGGCATGGGAAGGAGAGAAGATTCACGAAGAGTGTGGATCCGACGATCTGGAGCTCACTCTTGGGAGCTCAAGAACAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BES1_N

Protein Analysis

325

Amino Acids

34.89

Weight (kDa)

8.09

Isoelectric Point (pI)

58.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 4 - 139 6e-60 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
Acc36I ACCTGC 1 cut(s) 375
AccB1I GGYRCC 1 cut(s) 200
AccB7I CCANNNNNTGG 1 cut(s) 620
AciI CCGC 6 cut(s) 67, 80, 211, 471, 757, 780
AclWI GGATC 7 cut(s) 249, 262, 635, 747, 760, 924, 937
AcsI RAATTY 1 cut(s) 682
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 1 cut(s) 110
AfiI CCNNNNNNNGG 3 cut(s) 320, 620, 762
AjiI CACGTC 2 cut(s) 27, 244
AjnI CCWGG 4 cut(s) 319, 518, 565, 619
AjuI GAANNNNNNNTTGG 2 cut(s) 337, 369
AluBI AGCT 8 cut(s) 124, 266, 276, 507, 743, 806, 946, 960
AluI AGCT 8 cut(s) 124, 266, 276, 507, 743, 806, 946, 960
Alw21I GWGCWC 3 cut(s) 562, 948, 962
Alw26I GTCTC 1 cut(s) 709
AlwI GGATC 7 cut(s) 249, 262, 635, 747, 760, 924, 937
Ama87I CYCGRG 1 cut(s) 770
AoxI GGCC 4 cut(s) 72, 97, 174, 432
ApeKI GCWGC 2 cut(s) 580, 803
ApoI RAATTY 1 cut(s) 682
AspS9I GGNCC 5 cut(s) 72, 151, 183, 387, 677
AsuC2I CCSGG 2 cut(s) 771, 772
AsuHPI GGTGA 1 cut(s) 856
AsuNHI GCTAGC 1 cut(s) 266
AvaI CYCGRG 1 cut(s) 770
AvaII GGWCC 4 cut(s) 151, 183, 387, 677
BaeGI GKGCMC 1 cut(s) 487
BamHI GGATCC 3 cut(s) 254, 752, 929
BanI GGYRCC 1 cut(s) 200
BanII GRGCYC 2 cut(s) 948, 962
BarI GAAGNNNNNNTAC 2 cut(s) 286, 318
Bbv12I GWGCWC 3 cut(s) 562, 948, 962
BbvI GCAGC 2 cut(s) 592, 815
BccI CCATC 3 cut(s) 241, 374, 607
BceAI ACGGC 3 cut(s) 127, 214, 641
BcgI CGANNNNNNTGC 4 cut(s) 211, 245, 411, 445
BciT130I CCWGG 4 cut(s) 321, 520, 567, 621
BclI TGATCA 1 cut(s) 814
BcnI CCSGG 2 cut(s) 771, 772
BcoDI GTCTC 1 cut(s) 709
BfaI CTAG 3 cut(s) 267, 339, 576
BfuAI ACCTGC 1 cut(s) 375
BglI GCCNNNNNGGC 1 cut(s) 80
BglII AGATCT 1 cut(s) 87
BisI GCNGC 4 cut(s) 81, 472, 581, 804
BlsI GCNGC 4 cut(s) 82, 473, 582, 805
Bme1390I CCNGG 6 cut(s) 321, 520, 567, 621, 771, 772
Bme18I GGWCC 4 cut(s) 151, 183, 387, 677
BmeT110I CYCGRG 1 cut(s) 770
BmgBI CACGTC 2 cut(s) 27, 244
BmgT120I GGNCC 5 cut(s) 72, 151, 183, 387, 677
BmiI GGNNCC 6 cut(s) 202, 256, 389, 669, 754, 931
BmrFI CCNGG 6 cut(s) 321, 520, 567, 621, 771, 772
BmrI ACTGGG 1 cut(s) 553
BmsI GCATC 3 cut(s) 209, 431, 860
BmtI GCTAGC 1 cut(s) 270
BmuI ACTGGG 1 cut(s) 553
BpmI CTGGAG 1 cut(s) 962
BpuEI CTTGAG 2 cut(s) 140, 946
BpuMI CCSGG 2 cut(s) 771, 772
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 6 cut(s) 319, 398, 466, 619, 673, 770
BsaWI WCCGGW 1 cut(s) 664
BsaXI ACNNNNNCTCC 2 cut(s) 775, 805
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 620, 762
Bse118I RCCGGY 3 cut(s) 95, 176, 226
Bse1I ACTGG 2 cut(s) 548, 553
Bse3DI GCAATG 1 cut(s) 798
BseBI CCWGG 4 cut(s) 321, 520, 567, 621
BseDI CCNNGG 6 cut(s) 319, 398, 466, 619, 673, 770
BseGI GGATG 6 cut(s) 224, 422, 462, 553, 828, 875
BseLI CCNNNNNNNGG 3 cut(s) 320, 620, 762
BseMI GCAATG 1 cut(s) 798
BseMII CTCAG 2 cut(s) 92, 831
BseNI ACTGG 2 cut(s) 548, 553
BseRI GAGGAG 3 cut(s) 76, 406, 427
BseSI GKGCMC 1 cut(s) 487
BseXI GCAGC 2 cut(s) 592, 815
BseYI CCCAGC 2 cut(s) 570, 656
Bsh1285I CGRYCG 1 cut(s) 231
BshFI GGCC 4 cut(s) 74, 99, 176, 434
BshNI GGYRCC 1 cut(s) 200
BsiEI CGRYCG 1 cut(s) 231
BsiHKAI GWGCWC 3 cut(s) 562, 948, 962
BsiHKCI CYCGRG 1 cut(s) 770
BsiSI CCGG 5 cut(s) 96, 177, 227, 665, 771
BslFI GGGAC 3 cut(s) 25, 373, 796
BslI CCNNNNNNNGG 3 cut(s) 320, 620, 762
BsmAI GTCTC 1 cut(s) 709
BsmFI GGGAC 3 cut(s) 25, 373, 796
BsmI GAATGC 2 cut(s) 24, 379
BsnI GGCC 4 cut(s) 74, 99, 176, 434
BsoBI CYCGRG 1 cut(s) 770
Bsp1286I GDGCHC 4 cut(s) 487, 562, 948, 962
Bsp143I GATC 7 cut(s) 87, 254, 640, 752, 814, 929, 937
Bsp19I CCATGG 2 cut(s) 398, 466
BspACI CCGC 6 cut(s) 67, 80, 211, 471, 757, 780
BspANI GGCC 4 cut(s) 74, 99, 176, 434
BspCNI CTCAG 2 cut(s) 93, 832
BspLI GGNNCC 6 cut(s) 202, 256, 389, 669, 754, 931
BspMI ACCTGC 1 cut(s) 375
BspOI GCTAGC 1 cut(s) 270
BspPI GGATC 7 cut(s) 249, 262, 635, 747, 760, 924, 937
BspQI GCTCTTC 1 cut(s) 331
BspT107I GGYRCC 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 798
BsrFI RCCGGY 3 cut(s) 95, 176, 226
BsrI ACTGG 2 cut(s) 548, 553
BssAI RCCGGY 3 cut(s) 95, 176, 226
BssECI CCNNGG 6 cut(s) 319, 398, 466, 619, 673, 770
BssMI GATC 7 cut(s) 87, 254, 640, 752, 814, 929, 937
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 398, 466
Bst2UI CCWGG 4 cut(s) 321, 520, 567, 621
Bst4CI ACNGT 1 cut(s) 187
Bst6I CTCTTC 5 cut(s) 49, 331, 433, 445, 915
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 219
BstC8I GCNNGC 4 cut(s) 97, 224, 268, 808
BstDEI CTNAG 2 cut(s) 101, 840
BstDSI CCRYGG 3 cut(s) 398, 466, 673
BstF5I GGATG 6 cut(s) 224, 422, 462, 553, 828, 875
BstKTI GATC 7 cut(s) 90, 257, 643, 755, 817, 932, 940
BstMAI GTCTC 1 cut(s) 709
BstMBI GATC 7 cut(s) 87, 254, 640, 752, 814, 929, 937
BstMCI CGRYCG 1 cut(s) 231
BstMWI GCNNNNNNNGC 5 cut(s) 80, 130, 219, 786, 803
BstNI CCWGG 4 cut(s) 321, 520, 567, 621
BstNSI RCATGY 2 cut(s) 763, 789
BstSCI CCNGG 6 cut(s) 319, 518, 565, 619, 769, 770
BstSLI GKGCMC 1 cut(s) 487
BstV1I GCAGC 2 cut(s) 592, 815
BstX2I RGATCY 4 cut(s) 87, 254, 752, 929
BstXI CCANNNNNNTGG 1 cut(s) 570
BstYI RGATCY 4 cut(s) 87, 254, 752, 929
BsuRI GGCC 4 cut(s) 74, 99, 176, 434
BtgI CCRYGG 3 cut(s) 398, 466, 673
BtrI CACGTC 2 cut(s) 27, 244
BtsCI GGATG 6 cut(s) 224, 422, 462, 553, 828, 875
BtsI GCAGTG 2 cut(s) 133, 819
BtsIMutI CAGTG 4 cut(s) 133, 487, 560, 819
BveI ACCTGC 1 cut(s) 375
Cac8I GCNNGC 4 cut(s) 97, 224, 268, 808
Cfr10I RCCGGY 3 cut(s) 95, 176, 226
Cfr13I GGNCC 5 cut(s) 72, 151, 183, 387, 677
Cfr9I CCCGGG 1 cut(s) 770
Csp6I GTAC 1 cut(s) 109
CviAII CATG 8 cut(s) 238, 399, 467, 595, 760, 786, 835, 897
CviQI GTAC 1 cut(s) 109
DdeI CTNAG 2 cut(s) 101, 840
DpnI GATC 7 cut(s) 89, 256, 642, 754, 816, 931, 939
DpnII GATC 7 cut(s) 87, 254, 640, 752, 814, 929, 937
DraI TTTAAA 1 cut(s) 711
Eam1104I CTCTTC 5 cut(s) 49, 331, 433, 445, 915
EarI CTCTTC 5 cut(s) 49, 331, 433, 445, 915
EciI GGCGGA 1 cut(s) 82
Ecl136II GAGCTC 2 cut(s) 946, 960
Eco130I CCWWGG 2 cut(s) 398, 466
Eco24I GRGCYC 2 cut(s) 948, 962
Eco47I GGWCC 4 cut(s) 151, 183, 387, 677
Eco53kI GAGCTC 2 cut(s) 946, 960
Eco88I CYCGRG 1 cut(s) 770
EcoICRI GAGCTC 2 cut(s) 946, 960
EcoO109I RGGNCCY 2 cut(s) 151, 387
EcoRII CCWGG 4 cut(s) 319, 518, 565, 619
EcoT14I CCWWGG 2 cut(s) 398, 466
EcoT38I GRGCYC 2 cut(s) 948, 962
ErhI CCWWGG 2 cut(s) 398, 466
FaeI CATG 8 cut(s) 241, 402, 470, 598, 763, 789, 838, 900
FalI AAGNNNNNCTT 2 cut(s) 265, 297
FaqI GGGAC 3 cut(s) 25, 373, 796
FatI CATG 8 cut(s) 237, 398, 466, 594, 759, 785, 834, 896
FauI CCCGC 2 cut(s) 764, 773
FbaI TGATCA 1 cut(s) 814
Fnu4HI GCNGC 4 cut(s) 81, 472, 581, 804
FokI GGATG 6 cut(s) 231, 409, 449, 560, 815, 882
FriOI GRGCYC 2 cut(s) 948, 962
Fsp4HI GCNGC 4 cut(s) 81, 472, 581, 804
FspBI CTAG 3 cut(s) 267, 339, 576
GluI GCNGC 4 cut(s) 81, 472, 581, 804
GsaI CCCAGC 2 cut(s) 574, 660
GsuI CTGGAG 1 cut(s) 962
HaeIII GGCC 4 cut(s) 74, 99, 176, 434
HapII CCGG 5 cut(s) 96, 177, 227, 665, 771
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 8 cut(s) 241, 402, 470, 598, 763, 789, 838, 900
HinfI GANTC 4 cut(s) 13, 661, 766, 913
HpaII CCGG 5 cut(s) 96, 177, 227, 665, 771
HphI GGTGA 1 cut(s) 856
Hpy166II GTNNAC 2 cut(s) 677, 765
Hpy188I TCNGA 4 cut(s) 814, 841, 853, 934
Hpy188III TCNNGA 5 cut(s) 638, 644, 917, 941, 963
Hpy8I GTNNAC 2 cut(s) 677, 765
Hpy99I CGWCG 5 cut(s) 10, 28, 173, 191, 938
HpyAV CCTTC 4 cut(s) 25, 343, 601, 896
HpyCH4III ACNGT 1 cut(s) 187
HpyCH4IV ACGT 3 cut(s) 5, 26, 243
HpyCH4V TGCA 5 cut(s) 222, 422, 803, 863, 873
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 130, 219, 786, 803
HpyF3I CTNAG 2 cut(s) 101, 840
HpySE526I ACGT 3 cut(s) 5, 26, 243
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 8 cut(s) 241, 402, 470, 598, 763, 789, 838, 900
KroI GCCGGC 1 cut(s) 95
KroNI GCCGGC 1 cut(s) 97
Ksp22I TGATCA 1 cut(s) 814
Kzo9I GATC 7 cut(s) 87, 254, 640, 752, 814, 929, 937
LguI GCTCTTC 1 cut(s) 331
LmnI GCTCC 5 cut(s) 129, 512, 565, 943, 957
Lsp1109I GCAGC 2 cut(s) 592, 815
LweI GCATC 3 cut(s) 209, 431, 860
MaeI CTAG 3 cut(s) 267, 339, 576
MaeII ACGT 3 cut(s) 5, 26, 243
MaeIII GTNAC 1 cut(s) 490
MalI GATC 7 cut(s) 89, 256, 642, 754, 816, 931, 939
MboI GATC 7 cut(s) 87, 254, 640, 752, 814, 929, 937
MboII GAAGA 9 cut(s) 66, 97, 318, 345, 420, 432, 594, 922, 932
MflI RGATCY 4 cut(s) 87, 254, 752, 929
MhlI GDGCHC 4 cut(s) 487, 562, 948, 962
MluCI AATT 5 cut(s) 191, 295, 537, 584, 682
MlyI GAGTC 2 cut(s) 7, 760
MmeI TCCRAC 3 cut(s) 161, 713, 957
MroNI GCCGGC 1 cut(s) 95
MseI TTAA 4 cut(s) 503, 710, 726, 891
MslI CAYNNNNRTG 3 cut(s) 242, 833, 868
MspA1I CMGCKG 1 cut(s) 806
MspI CCGG 5 cut(s) 96, 177, 227, 665, 771
MspR9I CCNGG 6 cut(s) 321, 520, 567, 621, 771, 772
Mva1269I GAATGC 2 cut(s) 24, 379
MvaI CCWGG 4 cut(s) 321, 520, 567, 621
MwoI GCNNNNNNNGC 5 cut(s) 80, 130, 219, 786, 803
NaeI GCCGGC 1 cut(s) 97
NciI CCSGG 2 cut(s) 771, 772
NcoI CCATGG 2 cut(s) 398, 466
NdeII GATC 7 cut(s) 87, 254, 640, 752, 814, 929, 937
NgoMIV GCCGGC 1 cut(s) 95
NheI GCTAGC 1 cut(s) 266
NlaIII CATG 8 cut(s) 241, 402, 470, 598, 763, 789, 838, 900
NlaIV GGNNCC 6 cut(s) 202, 256, 389, 669, 754, 931
NspI RCATGY 2 cut(s) 763, 789
PciSI GCTCTTC 1 cut(s) 331
PctI GAATGC 2 cut(s) 24, 379
PdiI GCCGGC 1 cut(s) 97
PfeI GAWTC 2 cut(s) 661, 913
PflMI CCANNNNNTGG 1 cut(s) 620
PkrI GCNGC 4 cut(s) 82, 473, 582, 805
PleI GAGTC 2 cut(s) 7, 760
PpsI GAGTC 2 cut(s) 7, 760
PpuMI RGGWCCY 2 cut(s) 151, 387
Psp124BI GAGCTC 2 cut(s) 948, 962
Psp5II RGGWCCY 2 cut(s) 151, 387
Psp6I CCWGG 4 cut(s) 319, 518, 565, 619
PspFI CCCAGC 2 cut(s) 570, 656
PspGI CCWGG 4 cut(s) 319, 518, 565, 619
PspN4I GGNNCC 6 cut(s) 202, 256, 389, 669, 754, 931
PspPI GGNCC 5 cut(s) 72, 151, 183, 387, 677
PspPPI RGGWCCY 2 cut(s) 151, 387
PsuI RGATCY 4 cut(s) 87, 254, 752, 929
PvuII CAGCTG 1 cut(s) 806
RsaI GTAC 1 cut(s) 110
RsaNI GTAC 1 cut(s) 109
RseI CAYNNNNRTG 3 cut(s) 242, 833, 868
SacI GAGCTC 2 cut(s) 948, 962
SapI GCTCTTC 1 cut(s) 331
SaqAI TTAA 4 cut(s) 503, 710, 726, 891
SatI GCNGC 4 cut(s) 81, 472, 581, 804
Sau3AI GATC 7 cut(s) 87, 254, 640, 752, 814, 929, 937
Sau96I GGNCC 5 cut(s) 72, 151, 183, 387, 677
SchI GAGTC 2 cut(s) 7, 760
ScrFI CCNGG 6 cut(s) 321, 520, 567, 621, 771, 772
SduI GDGCHC 4 cut(s) 487, 562, 948, 962
SfaNI GCATC 3 cut(s) 209, 431, 860
SinI GGWCC 4 cut(s) 151, 183, 387, 677
SmaI CCCGGG 1 cut(s) 772
SmiMI CAYNNNNRTG 3 cut(s) 242, 833, 868
SmlI CTYRAG 2 cut(s) 155, 961
SmoI CTYRAG 2 cut(s) 155, 961
Sse9I AATT 5 cut(s) 191, 295, 537, 584, 682
SsiI CCGC 6 cut(s) 67, 80, 211, 471, 757, 780
SspMI CTAG 3 cut(s) 267, 339, 576
SstI GAGCTC 2 cut(s) 948, 962
StyD4I CCNGG 6 cut(s) 319, 518, 565, 619, 769, 770
StyI CCWWGG 2 cut(s) 398, 466
TaaI ACNGT 1 cut(s) 187
TaiI ACGT 3 cut(s) 8, 29, 246
TaqI TCGA 3 cut(s) 16, 189, 231
TasI AATT 5 cut(s) 191, 295, 537, 584, 682
TauI GCSGC 2 cut(s) 83, 474
TfiI GAWTC 2 cut(s) 661, 913
Tru1I TTAA 4 cut(s) 503, 710, 726, 891
Tru9I TTAA 4 cut(s) 503, 710, 726, 891
TscAI CASTG 4 cut(s) 140, 487, 560, 826
TseI GCWGC 2 cut(s) 580, 803
TspDTI ATGAA 1 cut(s) 583
TspMI CCCGGG 1 cut(s) 770
TspRI CASTG 4 cut(s) 140, 487, 560, 826
Van91I CCANNNNNTGG 1 cut(s) 620
VpaK11BI GGWCC 4 cut(s) 151, 183, 387, 677
XapI RAATTY 1 cut(s) 682
XceI RCATGY 2 cut(s) 763, 789
XmaI CCCGGG 1 cut(s) 770
XspI CTAG 3 cut(s) 267, 339, 576
ZraI GACGTC 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.