FvH4_3g17990

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0009842
Physical Location & Seq
Reverse (-)
11440777 .. 11444536
3760 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g17990.t3

Sequence Viewer

Length: 831 bp
ATGATATGGTCCCCTTGGAAGAAAATTATAAAAGTGTACGTGGTCAGTAGTCAGGTTGATCAGATTATTAAGGGATGCAAGCCTGTTGAACGTATGGACATTGTGGACGGATCAGCAGCTGCTAGCCCGTGCTCATCTTACCACCCAAGTAACTATGCTTCCTACAATCCAAGCCCTGGCTCATCCTCCTTCCCTAGCCCAGCATCATCTTCCTATGCTGCTCATCAGAATGTTGATGGCAGTTCCCTTATCCCATGGCTAAAACATCTCTCCTCCGGATCCTCTTCTGCCTCCTCTTCCAAGCTACCAAATATGTACATCCATGGTGGCTCTATTAGTGCCCCTGTCACGCCTCCATTGAGCTCTCCAACTTGCAGAACACCCCGGATGAACACGGACTGGGAACAGTCTGCTCAACCGGGATGGGGTGGGCAGCAGCACTCCTTCCTGCCATCTTCTACTCCACCAAGCCCTGGCAGGCAGATTATTCCTAGTCCAGAATGGTTTTCTGGGATTCAAATTCCCCATGGACCAACTTCTCCGACATTTAGCCTTGTCTCTTCAAACCCATTTGGGTTCAAGGAAGAGGCTTTAGCTGGTGGAGGCTCTCGAATGTGGACTCCTGGACAGAGTGGGACATGCTCTCCTGCCATTGCAGCAGGCTCTGATCACACTGCAGACATTCCAATGTCTGAGGTGATCTCTGACGAGTTTGCATTCGGATCATGCAACACAGCAGGGCTGGTTAAGGCATGGGAAGGAGAAAGGATTCATGAAGAATCCGGATCTGATGATCTAGAGCTCACTCTTGGGTGCTCAAAAACCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BES1_N

Protein Analysis

277

Amino Acids

29.13

Weight (kDa)

5.87

Isoelectric Point (pI)

55.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 3 - 59 8.5e-06 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 29
AccB7I CCANNNNNTGG 2 cut(s) 176, 473
AccIII TCCGGA 2 cut(s) 275, 782
AclWI GGATC 5 cut(s) 118, 273, 286, 730, 793
AcsI RAATTY 1 cut(s) 519
AfaI GTAC 2 cut(s) 38, 317
AfiI CCNNNNNNNGG 3 cut(s) 176, 425, 473
AgsI TTSAA 4 cut(s) 89, 518, 564, 580
AjnI CCWGG 4 cut(s) 175, 472, 622, 824
AluBI AGCT 5 cut(s) 119, 304, 363, 596, 802
AluI AGCT 5 cut(s) 119, 304, 363, 596, 802
Alw21I GWGCWC 4 cut(s) 134, 365, 804, 818
Alw26I GTCTC 1 cut(s) 562
AlwI GGATC 5 cut(s) 118, 273, 286, 730, 793
AlwNI CAGNNNCTG 2 cut(s) 119, 665
Aor13HI TCCGGA 2 cut(s) 275, 782
ApeKI GCWGC 6 cut(s) 116, 119, 218, 433, 436, 656
ApoI RAATTY 1 cut(s) 519
Asp700I GAANNNNTTC 1 cut(s) 768
AspS9I GGNCC 2 cut(s) 9, 530
AsuC2I CCSGG 2 cut(s) 385, 420
AsuHPI GGTGA 1 cut(s) 709
AsuNHI GCTAGC 1 cut(s) 122
AvaII GGWCC 2 cut(s) 9, 530
BaeGI GKGCMC 1 cut(s) 343
BamHI GGATCC 1 cut(s) 278
BanII GRGCYC 2 cut(s) 365, 804
BarI GAAGNNNNNNTAC 2 cut(s) 142, 174
Bbv12I GWGCWC 4 cut(s) 134, 365, 804, 818
BbvI GCAGC 6 cut(s) 106, 128, 205, 445, 448, 668
BccI CCATC 3 cut(s) 230, 417, 460
BciT130I CCWGG 4 cut(s) 177, 474, 624, 826
BclI TGATCA 2 cut(s) 58, 667
BcnI CCSGG 2 cut(s) 385, 420
BcoDI GTCTC 1 cut(s) 562
BfaI CTAG 4 cut(s) 123, 195, 492, 797
BfmI CTRYAG 1 cut(s) 675
BisI GCNGC 6 cut(s) 117, 120, 219, 434, 437, 657
BlsI GCNGC 6 cut(s) 118, 121, 220, 435, 438, 658
Bme1390I CCNGG 6 cut(s) 177, 385, 420, 474, 624, 826
Bme18I GGWCC 2 cut(s) 9, 530
BmgT120I GGNCC 2 cut(s) 9, 530
BmiI GGNNCC 2 cut(s) 11, 280
BmrFI CCNGG 6 cut(s) 177, 385, 420, 474, 624, 826
BmrI ACTGGG 1 cut(s) 409
BmsI GCATC 2 cut(s) 65, 212
BmtI GCTAGC 1 cut(s) 126
BmuI ACTGGG 1 cut(s) 409
BplI GAGNNNNNCTC 2 cut(s) 686, 718
BpuMI CCSGG 2 cut(s) 385, 420
BsaAI YACGTR 1 cut(s) 40
BsaJI CCNNGG 7 cut(s) 14, 175, 254, 322, 383, 472, 526
BsaWI WCCGGW 2 cut(s) 275, 782
BsaXI ACNNNNNCTCC 2 cut(s) 628, 658
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 425, 473
Bse1I ACTGG 1 cut(s) 404
Bse3DI GCAATG 1 cut(s) 651
BseAI TCCGGA 2 cut(s) 275, 782
BseBI CCWGG 4 cut(s) 177, 474, 624, 826
BseDI CCNNGG 7 cut(s) 14, 175, 254, 322, 383, 472, 526
BseGI GGATG 5 cut(s) 80, 182, 318, 393, 428
BseLI CCNNNNNNNGG 3 cut(s) 176, 425, 473
BseMI GCAATG 1 cut(s) 651
BseMII CTCAG 1 cut(s) 684
BseNI ACTGG 1 cut(s) 404
BseRI GAGGAG 2 cut(s) 262, 283
BseSI GKGCMC 1 cut(s) 343
BseXI GCAGC 6 cut(s) 106, 128, 205, 445, 448, 668
BseYI CCCAGC 1 cut(s) 199
BsiHKAI GWGCWC 4 cut(s) 134, 365, 804, 818
BsiSI CCGG 4 cut(s) 276, 385, 419, 783
BslFI GGGAC 1 cut(s) 649
BslI CCNNNNNNNGG 3 cut(s) 176, 425, 473
BsmAI GTCTC 1 cut(s) 562
BsmFI GGGAC 1 cut(s) 649
BsmI GAATGC 1 cut(s) 716
Bsp1286I GDGCHC 5 cut(s) 134, 343, 365, 804, 818
Bsp13I TCCGGA 2 cut(s) 275, 782
Bsp1407I TGTACA 1 cut(s) 315
Bsp143I GATC 8 cut(s) 58, 110, 278, 667, 699, 722, 785, 793
Bsp19I CCATGG 3 cut(s) 254, 322, 526
BspCNI CTCAG 1 cut(s) 685
BspEI TCCGGA 2 cut(s) 275, 782
BspHI TCATGA 1 cut(s) 772
BspLI GGNNCC 2 cut(s) 11, 280
BspMAI CTGCAG 1 cut(s) 679
BspOI GCTAGC 1 cut(s) 126
BspPI GGATC 5 cut(s) 118, 273, 286, 730, 793
BsrDI GCAATG 1 cut(s) 651
BsrGI TGTACA 1 cut(s) 315
BsrI ACTGG 1 cut(s) 404
BssECI CCNNGG 7 cut(s) 14, 175, 254, 322, 383, 472, 526
BssMI GATC 8 cut(s) 58, 110, 278, 667, 699, 722, 785, 793
BssT1I CCWWGG 4 cut(s) 14, 254, 322, 526
Bst2UI CCWGG 4 cut(s) 177, 474, 624, 826
Bst4CI ACNGT 1 cut(s) 408
Bst6I CTCTTC 4 cut(s) 289, 301, 565, 579
BstAUI TGTACA 1 cut(s) 315
BstBAI YACGTR 1 cut(s) 40
BstC8I GCNNGC 4 cut(s) 80, 124, 479, 661
BstDEI CTNAG 1 cut(s) 693
BstDSI CCRYGG 3 cut(s) 254, 322, 526
BstF5I GGATG 5 cut(s) 80, 182, 318, 393, 428
BstKTI GATC 8 cut(s) 61, 113, 281, 670, 702, 725, 788, 796
BstMAI GTCTC 1 cut(s) 562
BstMBI GATC 8 cut(s) 58, 110, 278, 667, 699, 722, 785, 793
BstMWI GCNNNNNNNGC 1 cut(s) 656
BstNI CCWGG 4 cut(s) 177, 474, 624, 826
BstNSI RCATGY 1 cut(s) 642
BstSCI CCNGG 6 cut(s) 175, 383, 418, 472, 622, 824
BstSFI CTRYAG 1 cut(s) 675
BstSLI GKGCMC 1 cut(s) 343
BstV1I GCAGC 6 cut(s) 106, 128, 205, 445, 448, 668
BstX2I RGATCY 2 cut(s) 278, 785
BstYI RGATCY 2 cut(s) 278, 785
BtgI CCRYGG 3 cut(s) 254, 322, 526
BtsCI GGATG 5 cut(s) 80, 182, 318, 393, 428
BtsI GCAGTG 1 cut(s) 672
BtsIMutI CAGTG 1 cut(s) 672
Cac8I GCNNGC 4 cut(s) 80, 124, 479, 661
CaiI CAGNNNCTG 2 cut(s) 119, 665
CciI TCATGA 1 cut(s) 772
Cfr13I GGNCC 2 cut(s) 9, 530
CsiI ACCWGGT 1 cut(s) 824
Csp6I GTAC 2 cut(s) 37, 316
CviAII CATG 7 cut(s) 255, 323, 527, 639, 726, 753, 773
CviQI GTAC 2 cut(s) 37, 316
DdeI CTNAG 1 cut(s) 693
DpnI GATC 8 cut(s) 60, 112, 280, 669, 701, 724, 787, 795
DpnII GATC 8 cut(s) 58, 110, 278, 667, 699, 722, 785, 793
Eam1104I CTCTTC 4 cut(s) 289, 301, 565, 579
EarI CTCTTC 4 cut(s) 289, 301, 565, 579
Ecl136II GAGCTC 2 cut(s) 363, 802
Eco130I CCWWGG 4 cut(s) 14, 254, 322, 526
Eco24I GRGCYC 2 cut(s) 365, 804
Eco47I GGWCC 2 cut(s) 9, 530
Eco53kI GAGCTC 2 cut(s) 363, 802
EcoICRI GAGCTC 2 cut(s) 363, 802
EcoRII CCWGG 4 cut(s) 175, 472, 622, 824
EcoT14I CCWWGG 4 cut(s) 14, 254, 322, 526
EcoT38I GRGCYC 2 cut(s) 365, 804
ErhI CCWWGG 4 cut(s) 14, 254, 322, 526
FaeI CATG 7 cut(s) 258, 326, 530, 642, 729, 756, 776
FaqI GGGAC 1 cut(s) 649
FatI CATG 7 cut(s) 254, 322, 526, 638, 725, 752, 772
FbaI TGATCA 2 cut(s) 58, 667
Fnu4HI GCNGC 6 cut(s) 117, 120, 219, 434, 437, 657
FokI GGATG 5 cut(s) 87, 169, 305, 400, 435
FriOI GRGCYC 2 cut(s) 365, 804
Fsp4HI GCNGC 6 cut(s) 117, 120, 219, 434, 437, 657
FspBI CTAG 4 cut(s) 123, 195, 492, 797
GluI GCNGC 6 cut(s) 117, 120, 219, 434, 437, 657
GsaI CCCAGC 1 cut(s) 203
HapII CCGG 4 cut(s) 276, 385, 419, 783
Hin1II CATG 7 cut(s) 258, 326, 530, 642, 729, 756, 776
HinfI GANTC 4 cut(s) 514, 619, 769, 779
HpaII CCGG 4 cut(s) 276, 385, 419, 783
HphI GGTGA 1 cut(s) 709
Hpy166II GTNNAC 3 cut(s) 37, 106, 618
Hpy188I TCNGA 8 cut(s) 63, 228, 543, 667, 694, 706, 722, 790
Hpy188III TCNNGA 6 cut(s) 276, 497, 609, 773, 783, 797
Hpy8I GTNNAC 3 cut(s) 37, 106, 618
HpyAV CCTTC 3 cut(s) 199, 454, 752
HpyCH4III ACNGT 1 cut(s) 408
HpyCH4IV ACGT 2 cut(s) 39, 91
HpyCH4V TGCA 6 cut(s) 78, 375, 656, 677, 716, 729
HpyF10VI GCNNNNNNNGC 1 cut(s) 656
HpyF3I CTNAG 1 cut(s) 693
HpySE526I ACGT 2 cut(s) 39, 91
Hsp92II CATG 7 cut(s) 258, 326, 530, 642, 729, 756, 776
Kpn2I TCCGGA 2 cut(s) 275, 782
Ksp22I TGATCA 2 cut(s) 58, 667
Kzo9I GATC 8 cut(s) 58, 110, 278, 667, 699, 722, 785, 793
Lsp1109I GCAGC 6 cut(s) 106, 128, 205, 445, 448, 668
LweI GCATC 2 cut(s) 65, 212
MabI ACCWGGT 1 cut(s) 824
MaeI CTAG 4 cut(s) 123, 195, 492, 797
MaeII ACGT 2 cut(s) 39, 91
MaeIII GTNAC 2 cut(s) 149, 346
MalI GATC 8 cut(s) 60, 112, 280, 669, 701, 724, 787, 795
MboI GATC 8 cut(s) 58, 110, 278, 667, 699, 722, 785, 793
MboII GAAGA 8 cut(s) 31, 201, 276, 288, 447, 552, 596, 788
MflI RGATCY 2 cut(s) 278, 785
MhlI GDGCHC 5 cut(s) 134, 343, 365, 804, 818
MluCI AATT 2 cut(s) 24, 519
MlyI GAGTC 1 cut(s) 613
MmeI TCCRAC 2 cut(s) 392, 566
MnlI CCTC 9 cut(s) 196, 283, 292, 301, 304, 363, 580, 596, 688
MroI TCCGGA 2 cut(s) 275, 782
MroXI GAANNNNTTC 1 cut(s) 768
MseI TTAA 2 cut(s) 69, 747
MslI CAYNNNNRTG 2 cut(s) 228, 686
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 4 cut(s) 276, 385, 419, 783
MspR9I CCNGG 6 cut(s) 177, 385, 420, 474, 624, 826
Mva1269I GAATGC 1 cut(s) 716
MvaI CCWGG 4 cut(s) 177, 474, 624, 826
MwoI GCNNNNNNNGC 1 cut(s) 656
NciI CCSGG 2 cut(s) 385, 420
NcoI CCATGG 3 cut(s) 254, 322, 526
NdeII GATC 8 cut(s) 58, 110, 278, 667, 699, 722, 785, 793
NheI GCTAGC 1 cut(s) 122
NlaIII CATG 7 cut(s) 258, 326, 530, 642, 729, 756, 776
NlaIV GGNNCC 2 cut(s) 11, 280
NmuCI GTSAC 1 cut(s) 346
NspI RCATGY 1 cut(s) 642
PagI TCATGA 1 cut(s) 772
PctI GAATGC 1 cut(s) 716
PdmI GAANNNNTTC 1 cut(s) 768
PfeI GAWTC 3 cut(s) 514, 769, 779
PflMI CCANNNNNTGG 2 cut(s) 176, 473
PfoI TCCNGGA 1 cut(s) 622
PkrI GCNGC 6 cut(s) 118, 121, 220, 435, 438, 658
PleI GAGTC 1 cut(s) 613
PpsI GAGTC 1 cut(s) 613
Ppu21I YACGTR 1 cut(s) 40
PsiI TTATAA 1 cut(s) 29
Psp124BI GAGCTC 2 cut(s) 365, 804
Psp6I CCWGG 4 cut(s) 175, 472, 622, 824
PspFI CCCAGC 1 cut(s) 199
PspGI CCWGG 4 cut(s) 175, 472, 622, 824
PspN4I GGNNCC 2 cut(s) 11, 280
PspPI GGNCC 2 cut(s) 9, 530
PstI CTGCAG 1 cut(s) 679
PstNI CAGNNNCTG 2 cut(s) 119, 665
PsuI RGATCY 2 cut(s) 278, 785
PvuII CAGCTG 1 cut(s) 119
RsaI GTAC 2 cut(s) 38, 317
RsaNI GTAC 2 cut(s) 37, 316
RseI CAYNNNNRTG 2 cut(s) 228, 686
SacI GAGCTC 2 cut(s) 365, 804
SaqAI TTAA 2 cut(s) 69, 747
SatI GCNGC 6 cut(s) 117, 120, 219, 434, 437, 657
Sau3AI GATC 8 cut(s) 58, 110, 278, 667, 699, 722, 785, 793
Sau96I GGNCC 2 cut(s) 9, 530
SchI GAGTC 1 cut(s) 613
ScrFI CCNGG 6 cut(s) 177, 385, 420, 474, 624, 826
SduI GDGCHC 5 cut(s) 134, 343, 365, 804, 818
SexAI ACCWGGT 1 cut(s) 824
SfaNI GCATC 2 cut(s) 65, 212
SfcI CTRYAG 1 cut(s) 675
SinI GGWCC 2 cut(s) 9, 530
SmiMI CAYNNNNRTG 2 cut(s) 228, 686
Sse9I AATT 2 cut(s) 24, 519
SspMI CTAG 4 cut(s) 123, 195, 492, 797
SstI GAGCTC 2 cut(s) 365, 804
StyD4I CCNGG 6 cut(s) 175, 383, 418, 472, 622, 824
StyI CCWWGG 4 cut(s) 14, 254, 322, 526
TaaI ACNGT 1 cut(s) 408
TaiI ACGT 2 cut(s) 42, 94
TaqI TCGA 1 cut(s) 610
TasI AATT 2 cut(s) 24, 519
TatI WGTACW 1 cut(s) 315
TfiI GAWTC 3 cut(s) 514, 769, 779
Tru1I TTAA 2 cut(s) 69, 747
Tru9I TTAA 2 cut(s) 69, 747
TscAI CASTG 1 cut(s) 679
TseFI GTSAC 1 cut(s) 346
TseI GCWGC 6 cut(s) 116, 119, 218, 433, 436, 656
Tsp45I GTSAC 1 cut(s) 346
TspDTI ATGAA 3 cut(s) 404, 761, 789
TspGWI ACGGA 2 cut(s) 123, 410
TspRI CASTG 1 cut(s) 679
Van91I CCANNNNNTGG 2 cut(s) 176, 473
VpaK11BI GGWCC 2 cut(s) 9, 530
XapI RAATTY 1 cut(s) 519
XbaI TCTAGA 1 cut(s) 796
XceI RCATGY 1 cut(s) 642
XmnI GAANNNNTTC 1 cut(s) 768
XspI CTAG 4 cut(s) 123, 195, 492, 797
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.