pycom03g19520

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0009842
Physical Location & Seq
Forward (+)
20100129 .. 20102955
2827 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g19520.1

Sequence Viewer

Length: 975 bp
ATGACGTCGGGGACGCGATTGCCGACGTCGAAGGAGAGAGAGAACAACAAGAGGAGAGAGAGGAGGCGGAGGGCCATAGCGGCGAAGATATTTGCAGGCCTGAGGATGTATGGAAACTACAAGCTCCCCAAGCACTGCGACAACAATGAGGTCCTCAAGGCTCTCTGCGACGAGGCCGGTTGGACCGTCGAATTGGACGGTACCACTTACCGCAAGGGTTGCAAGCCGGTTGAACGCATGGACGTGATGGGTGGATCCACAGTAGCTAGCCCAAGCTCGTCTTTCCACCCAAGTAATTGTGCTTCGTACAATCCCAGCCCAGGCTCTTCCTCCTTCCCAAGCCCAACATCATCTTCCTATGCTGCTAATCAAAATGCTGATAGCAGATCCCTTATCCCATGGCTCAGAAACCTCTCATCTGCATCCTCTTCAGCCTCCTCTTCCAAACTACCAAACCTCTACATCCACAGCGGCTCTATCAGTGCTCCTGTTACCCCTCCATTAAGCTCCCCAACTGCCAGGACGCCGAGAATGAGAACTGACTGGGATGGCCAGTCTGCTCGCCCAGGTTGGGCTGCGCAGAAATACCCCTTCCTGCCATCTTCTACTCCACCAAGCCCTGGACGGCAGATTGTTCCTGATCCAGAATGGTTTGCTGGGATTCCGATTCCCCATGGACCAACTTCTCCAACATTCAGCCTTGTCTCTTCAAACCCATTTGGGTTTAAGGACGAGGTTTCAGCCGGTGGTGGATCCCGCCTGTGGACTCCAGGGCAAAGTGGGACTTGTTCTCCTGCCATTGCAGCTGGCTCCGATCATGCTGCAGACATCCCAATGTCTGAGGTGATTTCTGATGAGTTTGCATTTGGATGCAATACAGCAGGACTGGTTAAGGCATGGGAAGGAGAGAAGATTCACGAAGACTCTGGATCAGATGATCTGGAGCTCACTCTTGGGAGCTCAAGAACAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BES1_N

Protein Analysis

325

Amino Acids

34.6

Weight (kDa)

8.71

Isoelectric Point (pI)

58.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BES1_N PF05687 4 - 139 1.1e-58 BES1/BZR1 plant transcription factor, N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 8, 29
Acc16I TGCGCA 1 cut(s) 579
Acc65I GGTACC 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 200
AccB7I CCANNNNNTGG 1 cut(s) 620
AccII CGCG 1 cut(s) 16
AciI CCGC 5 cut(s) 67, 80, 211, 471, 757
AclWI GGATC 7 cut(s) 249, 262, 381, 635, 747, 760, 937
AcoI YGGCCR 1 cut(s) 550
AcuI CTGAAG 1 cut(s) 414
AcyI GRCGYC 3 cut(s) 5, 26, 524
AfaI GTAC 2 cut(s) 202, 308
AfiI CCNNNNNNNGG 4 cut(s) 320, 571, 620, 762
AgsI TTSAA 2 cut(s) 233, 711
AjiI CACGTC 1 cut(s) 244
AjnI CCWGG 5 cut(s) 319, 518, 565, 619, 769
AjuI GAANNNNNNNTTGG 2 cut(s) 337, 369
AluBI AGCT 7 cut(s) 124, 266, 276, 507, 806, 946, 960
AluI AGCT 7 cut(s) 124, 266, 276, 507, 806, 946, 960
Alw21I GWGCWC 3 cut(s) 487, 948, 962
Alw26I GTCTC 1 cut(s) 709
AlwI GGATC 7 cut(s) 249, 262, 381, 635, 747, 760, 937
AoxI GGCC 4 cut(s) 72, 97, 174, 550
ApeKI GCWGC 4 cut(s) 362, 575, 803, 821
Asp718I GGTACC 1 cut(s) 200
AspLEI GCGC 1 cut(s) 580
AspS9I GGNCC 4 cut(s) 72, 151, 183, 677
AsuHPI GGTGA 1 cut(s) 856
AsuNHI GCTAGC 1 cut(s) 266
AvaII GGWCC 3 cut(s) 151, 183, 677
AxyI CCTNAGG 1 cut(s) 101
BalI TGGCCA 1 cut(s) 552
BamHI GGATCC 2 cut(s) 254, 752
BanI GGYRCC 1 cut(s) 200
BanII GRGCYC 2 cut(s) 948, 962
BarI GAAGNNNNNNTAC 2 cut(s) 286, 318
BbsI GAAGAC 1 cut(s) 927
Bbv12I GWGCWC 3 cut(s) 487, 948, 962
BbvI GCAGC 4 cut(s) 349, 562, 808, 815
BccI CCATC 3 cut(s) 241, 542, 607
BceAI ACGGC 1 cut(s) 641
BcgI CGANNNNNNTGC 2 cut(s) 803, 837
BciT130I CCWGG 5 cut(s) 321, 520, 567, 621, 771
BcoDI GTCTC 1 cut(s) 709
BfaI CTAG 1 cut(s) 267
BfmI CTRYAG 1 cut(s) 822
BglI GCCNNNNNGGC 1 cut(s) 80
BisI GCNGC 6 cut(s) 81, 363, 472, 576, 804, 822
BlsI GCNGC 6 cut(s) 82, 364, 473, 577, 805, 823
Bme1390I CCNGG 5 cut(s) 321, 520, 567, 621, 771
Bme18I GGWCC 3 cut(s) 151, 183, 677
BmgBI CACGTC 1 cut(s) 244
BmgT120I GGNCC 4 cut(s) 72, 151, 183, 677
BmiI GGNNCC 4 cut(s) 202, 256, 754, 811
BmrFI CCNGG 5 cut(s) 321, 520, 567, 621, 771
BmrI ACTGGG 1 cut(s) 553
BmsI GCATC 2 cut(s) 431, 860
BmtI GCTAGC 1 cut(s) 270
BmuI ACTGGG 1 cut(s) 553
BpiI GAAGAC 1 cut(s) 927
BpmI CTGGAG 2 cut(s) 753, 962
BpuEI CTTGAG 2 cut(s) 140, 946
BsaHI GRCGYC 3 cut(s) 5, 26, 524
BsaJI CCNNGG 6 cut(s) 319, 398, 565, 619, 673, 770
BsaXI ACNNNNNCTCC 2 cut(s) 775, 805
Bsc4I CCNNNNNNNGG 4 cut(s) 320, 571, 620, 762
Bse118I RCCGGY 3 cut(s) 176, 226, 743
Bse1I ACTGG 3 cut(s) 548, 553, 891
Bse21I CCTNAGG 1 cut(s) 101
Bse3DI GCAATG 1 cut(s) 798
BseBI CCWGG 5 cut(s) 321, 520, 567, 621, 771
BseDI CCNNGG 6 cut(s) 319, 398, 565, 619, 673, 770
BseGI GGATG 6 cut(s) 111, 422, 462, 553, 828, 875
BseLI CCNNNNNNNGG 4 cut(s) 320, 571, 620, 762
BseMI GCAATG 1 cut(s) 798
BseMII CTCAG 3 cut(s) 92, 418, 831
BseNI ACTGG 3 cut(s) 548, 553, 891
BseRI GAGGAG 3 cut(s) 67, 76, 427
BseXI GCAGC 4 cut(s) 349, 562, 808, 815
BseYI CCCAGC 2 cut(s) 314, 656
Bsh1236I CGCG 1 cut(s) 16
BshFI GGCC 4 cut(s) 74, 99, 176, 552
BshNI GGYRCC 1 cut(s) 200
BsiHKAI GWGCWC 3 cut(s) 487, 948, 962
BsiSI CCGG 3 cut(s) 177, 227, 744
BslFI GGGAC 2 cut(s) 25, 796
BslI CCNNNNNNNGG 4 cut(s) 320, 571, 620, 762
BsmAI GTCTC 1 cut(s) 709
BsmFI GGGAC 2 cut(s) 25, 796
BsnI GGCC 4 cut(s) 74, 99, 176, 552
Bsp1286I GDGCHC 3 cut(s) 487, 948, 962
Bsp143I GATC 7 cut(s) 254, 386, 640, 752, 814, 929, 937
Bsp19I CCATGG 2 cut(s) 398, 673
BspACI CCGC 5 cut(s) 67, 80, 211, 471, 757
BspANI GGCC 4 cut(s) 74, 99, 176, 552
BspCNI CTCAG 3 cut(s) 93, 417, 832
BspFNI CGCG 1 cut(s) 16
BspLI GGNNCC 4 cut(s) 202, 256, 754, 811
BspMAI CTGCAG 1 cut(s) 826
BspOI GCTAGC 1 cut(s) 270
BspPI GGATC 7 cut(s) 249, 262, 381, 635, 747, 760, 937
BspQI GCTCTTC 1 cut(s) 331
BspT107I GGYRCC 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 798
BsrFI RCCGGY 3 cut(s) 176, 226, 743
BsrI ACTGG 3 cut(s) 548, 553, 891
BssAI RCCGGY 3 cut(s) 176, 226, 743
BssECI CCNNGG 6 cut(s) 319, 398, 565, 619, 673, 770
BssMI GATC 7 cut(s) 254, 386, 640, 752, 814, 929, 937
BssNI GRCGYC 3 cut(s) 5, 26, 524
BssT1I CCWWGG 2 cut(s) 398, 673
Bst2UI CCWGG 5 cut(s) 321, 520, 567, 621, 771
Bst4CI ACNGT 3 cut(s) 187, 200, 262
Bst6I CTCTTC 4 cut(s) 331, 433, 445, 712
BstACI GRCGYC 3 cut(s) 5, 26, 524
BstAPI GCANNNNNTGC 1 cut(s) 219
BstC8I GCNNGC 5 cut(s) 97, 224, 268, 562, 808
BstDEI CTNAG 3 cut(s) 101, 404, 840
BstDSI CCRYGG 2 cut(s) 398, 673
BstF5I GGATG 6 cut(s) 111, 422, 462, 553, 828, 875
BstFNI CGCG 1 cut(s) 16
BstHHI GCGC 1 cut(s) 580
BstKTI GATC 7 cut(s) 257, 389, 643, 755, 817, 932, 940
BstMAI GTCTC 1 cut(s) 709
BstMBI GATC 7 cut(s) 254, 386, 640, 752, 814, 929, 937
BstMWI GCNNNNNNNGC 4 cut(s) 80, 130, 219, 803
BstNI CCWGG 5 cut(s) 321, 520, 567, 621, 771
BstSCI CCNGG 5 cut(s) 319, 518, 565, 619, 769
BstSFI CTRYAG 1 cut(s) 822
BstUI CGCG 1 cut(s) 16
BstV1I GCAGC 4 cut(s) 349, 562, 808, 815
BstV2I GAAGAC 1 cut(s) 927
BstX2I RGATCY 3 cut(s) 254, 386, 752
BstYI RGATCY 3 cut(s) 254, 386, 752
Bsu36I CCTNAGG 1 cut(s) 101
BsuRI GGCC 4 cut(s) 74, 99, 176, 552
BtgI CCRYGG 2 cut(s) 398, 673
BtrI CACGTC 1 cut(s) 244
BtsCI GGATG 6 cut(s) 111, 422, 462, 553, 828, 875
BtsI GCAGTG 1 cut(s) 133
BtsIMutI CAGTG 2 cut(s) 133, 487
Cac8I GCNNGC 5 cut(s) 97, 224, 268, 562, 808
CfoI GCGC 1 cut(s) 580
Cfr10I RCCGGY 3 cut(s) 176, 226, 743
Cfr13I GGNCC 4 cut(s) 72, 151, 183, 677
CseI GACGC 2 cut(s) 22, 532
Csp6I GTAC 2 cut(s) 201, 307
CviAII CATG 5 cut(s) 238, 399, 674, 818, 897
CviQI GTAC 2 cut(s) 201, 307
DdeI CTNAG 3 cut(s) 101, 404, 840
DpnI GATC 7 cut(s) 256, 388, 642, 754, 816, 931, 939
DpnII GATC 7 cut(s) 254, 386, 640, 752, 814, 929, 937
EaeI YGGCCR 1 cut(s) 550
Eam1104I CTCTTC 4 cut(s) 331, 433, 445, 712
EarI CTCTTC 4 cut(s) 331, 433, 445, 712
EciI GGCGGA 1 cut(s) 82
Ecl136II GAGCTC 2 cut(s) 946, 960
Eco130I CCWWGG 2 cut(s) 398, 673
Eco147I AGGCCT 1 cut(s) 99
Eco24I GRGCYC 2 cut(s) 948, 962
Eco47I GGWCC 3 cut(s) 151, 183, 677
Eco53kI GAGCTC 2 cut(s) 946, 960
Eco57I CTGAAG 1 cut(s) 414
Eco81I CCTNAGG 1 cut(s) 101
EcoICRI GAGCTC 2 cut(s) 946, 960
EcoO109I RGGNCCY 1 cut(s) 151
EcoRII CCWGG 5 cut(s) 319, 518, 565, 619, 769
EcoT14I CCWWGG 2 cut(s) 398, 673
EcoT38I GRGCYC 2 cut(s) 948, 962
ErhI CCWWGG 2 cut(s) 398, 673
FaeI CATG 5 cut(s) 241, 402, 677, 821, 900
FaiI YATR 8 cut(s) 77, 111, 239, 360, 400, 675, 819, 898
FalI AAGNNNNNCTT 4 cut(s) 265, 297, 769, 801
FaqI GGGAC 2 cut(s) 25, 796
FatI CATG 5 cut(s) 237, 398, 673, 817, 896
FauI CCCGC 1 cut(s) 764
Fnu4HI GCNGC 6 cut(s) 81, 363, 472, 576, 804, 822
FokI GGATG 6 cut(s) 118, 409, 449, 560, 815, 882
FriOI GRGCYC 2 cut(s) 948, 962
Fsp4HI GCNGC 6 cut(s) 81, 363, 472, 576, 804, 822
FspBI CTAG 1 cut(s) 267
FspI TGCGCA 1 cut(s) 579
GlaI GCGC 1 cut(s) 579
GluI GCNGC 6 cut(s) 81, 363, 472, 576, 804, 822
GsaI CCCAGC 2 cut(s) 318, 660
GsuI CTGGAG 2 cut(s) 753, 962
HaeIII GGCC 4 cut(s) 74, 99, 176, 552
HapII CCGG 3 cut(s) 177, 227, 744
HgaI GACGC 2 cut(s) 22, 532
HhaI GCGC 1 cut(s) 580
Hin1I GRCGYC 3 cut(s) 5, 26, 524
Hin1II CATG 5 cut(s) 241, 402, 677, 821, 900
Hin6I GCGC 1 cut(s) 578
HinP1I GCGC 1 cut(s) 578
HinfI GANTC 5 cut(s) 661, 667, 766, 913, 923
HpaII CCGG 3 cut(s) 177, 227, 744
HphI GGTGA 1 cut(s) 856
Hpy166II GTNNAC 1 cut(s) 765
Hpy188I TCNGA 6 cut(s) 407, 666, 814, 841, 853, 934
Hpy188III TCNNGA 6 cut(s) 638, 644, 917, 927, 941, 963
Hpy8I GTNNAC 1 cut(s) 765
Hpy99I CGWCG 5 cut(s) 10, 28, 31, 173, 191
HpyAV CCTTC 4 cut(s) 25, 343, 601, 896
HpyCH4III ACNGT 3 cut(s) 187, 200, 262
HpyCH4IV ACGT 3 cut(s) 5, 26, 243
HpyCH4V TGCA 7 cut(s) 95, 222, 422, 803, 824, 863, 873
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 130, 219, 803
HpyF3I CTNAG 3 cut(s) 101, 404, 840
HpySE526I ACGT 3 cut(s) 5, 26, 243
Hsp92I GRCGYC 3 cut(s) 5, 26, 524
Hsp92II CATG 5 cut(s) 241, 402, 677, 821, 900
HspAI GCGC 1 cut(s) 578
KpnI GGTACC 1 cut(s) 204
Kzo9I GATC 7 cut(s) 254, 386, 640, 752, 814, 929, 937
LguI GCTCTTC 1 cut(s) 331
LmnI GCTCC 6 cut(s) 129, 490, 512, 815, 943, 957
Lsp1109I GCAGC 4 cut(s) 349, 562, 808, 815
LweI GCATC 2 cut(s) 431, 860
MaeI CTAG 1 cut(s) 267
MaeII ACGT 3 cut(s) 5, 26, 243
MaeIII GTNAC 1 cut(s) 490
MalI GATC 7 cut(s) 256, 388, 642, 754, 816, 931, 939
MboI GATC 7 cut(s) 254, 386, 640, 752, 814, 929, 937
MboII GAAGA 9 cut(s) 97, 318, 345, 420, 432, 594, 699, 922, 932
MflI RGATCY 3 cut(s) 254, 386, 752
MhlI GDGCHC 3 cut(s) 487, 948, 962
MlsI TGGCCA 1 cut(s) 552
MluCI AATT 2 cut(s) 191, 295
MluNI TGGCCA 1 cut(s) 552
MlyI GAGTC 2 cut(s) 760, 917
MmeI TCCRAC 2 cut(s) 161, 713
Mox20I TGGCCA 1 cut(s) 552
MscI TGGCCA 1 cut(s) 552
MseI TTAA 3 cut(s) 503, 726, 891
MslI CAYNNNNRTG 3 cut(s) 242, 833, 868
Msp20I TGGCCA 1 cut(s) 552
MspA1I CMGCKG 2 cut(s) 471, 806
MspI CCGG 3 cut(s) 177, 227, 744
MspR9I CCNGG 5 cut(s) 321, 520, 567, 621, 771
MvaI CCWGG 5 cut(s) 321, 520, 567, 621, 771
MvnI CGCG 1 cut(s) 16
MwoI GCNNNNNNNGC 4 cut(s) 80, 130, 219, 803
NcoI CCATGG 2 cut(s) 398, 673
NdeII GATC 7 cut(s) 254, 386, 640, 752, 814, 929, 937
NheI GCTAGC 1 cut(s) 266
NlaIII CATG 5 cut(s) 241, 402, 677, 821, 900
NlaIV GGNNCC 4 cut(s) 202, 256, 754, 811
NmeAIII GCCGAG 1 cut(s) 552
NsbI TGCGCA 1 cut(s) 579
PceI AGGCCT 1 cut(s) 99
PciSI GCTCTTC 1 cut(s) 331
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PfeI GAWTC 3 cut(s) 661, 667, 913
PflMI CCANNNNNTGG 1 cut(s) 620
PkrI GCNGC 6 cut(s) 82, 364, 473, 577, 805, 823
PleI GAGTC 2 cut(s) 760, 917
PpsI GAGTC 2 cut(s) 760, 917
PpuMI RGGWCCY 1 cut(s) 151
Psp124BI GAGCTC 2 cut(s) 948, 962
Psp5II RGGWCCY 1 cut(s) 151
Psp6I CCWGG 5 cut(s) 319, 518, 565, 619, 769
PspFI CCCAGC 2 cut(s) 314, 656
PspGI CCWGG 5 cut(s) 319, 518, 565, 619, 769
PspN4I GGNNCC 4 cut(s) 202, 256, 754, 811
PspPI GGNCC 4 cut(s) 72, 151, 183, 677
PspPPI RGGWCCY 1 cut(s) 151
PstI CTGCAG 1 cut(s) 826
PsuI RGATCY 3 cut(s) 254, 386, 752
PvuII CAGCTG 1 cut(s) 806
RsaI GTAC 2 cut(s) 202, 308
RsaNI GTAC 2 cut(s) 201, 307
RseI CAYNNNNRTG 3 cut(s) 242, 833, 868
SacI GAGCTC 2 cut(s) 948, 962
SapI GCTCTTC 1 cut(s) 331
SaqAI TTAA 3 cut(s) 503, 726, 891
SatI GCNGC 6 cut(s) 81, 363, 472, 576, 804, 822
Sau3AI GATC 7 cut(s) 254, 386, 640, 752, 814, 929, 937
Sau96I GGNCC 4 cut(s) 72, 151, 183, 677
SchI GAGTC 2 cut(s) 760, 917
ScrFI CCNGG 5 cut(s) 321, 520, 567, 621, 771
SduI GDGCHC 3 cut(s) 487, 948, 962
SfaNI GCATC 2 cut(s) 431, 860
SfcI CTRYAG 1 cut(s) 822
SinI GGWCC 3 cut(s) 151, 183, 677
SmiMI CAYNNNNRTG 3 cut(s) 242, 833, 868
SmlI CTYRAG 2 cut(s) 155, 961
SmoI CTYRAG 2 cut(s) 155, 961
Sse9I AATT 2 cut(s) 191, 295
SseBI AGGCCT 1 cut(s) 99
SsiI CCGC 5 cut(s) 67, 80, 211, 471, 757
SspMI CTAG 1 cut(s) 267
SstI GAGCTC 2 cut(s) 948, 962
StuI AGGCCT 1 cut(s) 99
StyD4I CCNGG 5 cut(s) 319, 518, 565, 619, 769
StyI CCWWGG 2 cut(s) 398, 673
TaaI ACNGT 3 cut(s) 187, 200, 262
TaiI ACGT 3 cut(s) 8, 29, 246
TaqI TCGA 2 cut(s) 29, 189
TasI AATT 2 cut(s) 191, 295
TauI GCSGC 2 cut(s) 83, 474
TfiI GAWTC 3 cut(s) 661, 667, 913
Tru1I TTAA 3 cut(s) 503, 726, 891
Tru9I TTAA 3 cut(s) 503, 726, 891
TscAI CASTG 2 cut(s) 140, 487
TseI GCWGC 4 cut(s) 362, 575, 803, 821
TspRI CASTG 2 cut(s) 140, 487
Van91I CCANNNNNTGG 1 cut(s) 620
VpaK11BI GGWCC 3 cut(s) 151, 183, 677
XspI CTAG 1 cut(s) 267
ZraI GACGTC 2 cut(s) 6, 27
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.