Rorug05G0116500

BES1 BZR1 homolog protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009842
Physical Location & Seq
Forward (+)
10330822 .. 10332610
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0116500.1

Sequence Viewer

Length: 1047 bp
ATGGTCAGATCCTCAACAAAGCGAAACCGCCTAAACTCGGCGGAGCTCCCCAATCGAACCCGGCGAAACTGGTCGGAGCTCCCCGAGGAACTCACCTTTCAGGTCCTGTCTCGGCTCGGAGCCATCGATGTTCTGACCAGCGCTCAGAAGGTGTGTACGCAATGGCGGCGAATGTGTAAGCACCCGATGGTCTGGCGCACCATCGACATGGCCAACGATCACTTTTTCCACGAAGTTCACTACGATTTGGACAAGATGTGCCACCACGCCGTTGATCGGAGCTTCGGTCGAGTGGAGGATATCAATGTTGAGTACTTCGGCACCGACGAATTGCTCAAGTACATCACTGATAGTTCAAGTGGAATCAAACGCCTCCGCTTGGCACATTGCCCTAAAATAACTGATAAAGGACTGACTGAAGTGGCTCCGAAACTTCCATTGTTGGAGGACCTTGACTTTACATCCTGCAAAAATATCTCACATGAACCTCTGAAAGTGATTGGTAGCAGTTGCCCTCTTTTAAAATCATTCAAATTGGACACGTGGTTTAAACTACCAGAAGATGAGGTTTATGATGATACAGTTTTCAATATCGAGGAAGGTGAAGACACGGATGTGGAGGTGGAGGTGAATGCAGAGGTAAATGCCAATGCGGTTGCGGTTGCGGAAGTGGTTATGGATGGGGAGATGGATGCAGATGCGCTTGCTATAGCAGGGTCGATGCATGGTTTACACCATCTTCAGCTTTTTCGGAATGAGCTGACTAATGATGGCTTAAGTGAAATTCTTGATCATTGTCCTCGTCTCGAGTCACTTGATCTGCGCTATTGTTACAATCTCAATCTGAAAGGAGATTTGGGTATCAAATGTGCTGAACGTATTAAGAGATTGCAGCTCCCTGATAACTCCACTGATATTCCTAAAACTGATCTTTTAAAAAAGGATACAGTTTGGTTCACCTACCGTTCAGCTGATGATGTTGAAGGTCATGTGGCTGACGTCATTATTTTCAAAACAATTGATTTCACTGATGATTATGAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BES1_N

Protein Analysis

348

Amino Acids

39.9

Weight (kDa)

5.01

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box-like PF12937 24 - 69 9.6e-11 F-box-like
F-box PF00646 24 - 66 3.4e-08 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1002
AccB1I GGYRCC 1 cut(s) 320
AciI CCGC 7 cut(s) 28, 41, 166, 376, 653, 659, 665
AclWI GGATC 1 cut(s) 3
AcoI YGGCCR 1 cut(s) 210
AcsI RAATTY 1 cut(s) 783
AcuI CTGAAG 2 cut(s) 438, 725
AcvI CACGTG 1 cut(s) 543
AcyI GRCGYC 1 cut(s) 999
AfaI GTAC 3 cut(s) 157, 314, 341
AfeI AGCGCT 1 cut(s) 142
AfiI CCNNNNNNNGG 3 cut(s) 37, 276, 379
AflII CTTAAG 1 cut(s) 775
AflIII ACRYGT 1 cut(s) 540
AgsI TTSAA 5 cut(s) 357, 532, 589, 983, 1012
AjuI GAANNNNNNNTTGG 2 cut(s) 839, 871
AleI CACNNNNGTG 1 cut(s) 614
AluBI AGCT 7 cut(s) 46, 79, 282, 745, 760, 895, 971
AluI AGCT 7 cut(s) 46, 79, 282, 745, 760, 895, 971
Alw21I GWGCWC 2 cut(s) 48, 81
Alw26I GTCTC 2 cut(s) 114, 809
AlwI GGATC 1 cut(s) 3
AlwNI CAGNNNCTG 1 cut(s) 106
Ama87I CYCGRG 2 cut(s) 83, 806
Aor51HI AGCGCT 1 cut(s) 142
AoxI GGCC 1 cut(s) 210
ApeKI GCWGC 1 cut(s) 892
ApoI RAATTY 1 cut(s) 783
AspLEI GCGC 4 cut(s) 143, 198, 703, 825
AspS9I GGNCC 2 cut(s) 103, 448
AsuC2I CCSGG 1 cut(s) 61
AsuHPI GGTGA 4 cut(s) 85, 614, 640, 949
AvaI CYCGRG 2 cut(s) 83, 806
AvaII GGWCC 2 cut(s) 103, 448
BalI TGGCCA 1 cut(s) 212
BanI GGYRCC 1 cut(s) 320
BanII GRGCYC 2 cut(s) 48, 81
BbrPI CACGTG 1 cut(s) 543
BbsI GAAGAC 1 cut(s) 612
Bbv12I GWGCWC 2 cut(s) 48, 81
BbvI GCAGC 1 cut(s) 904
BccI CCATC 7 cut(s) 131, 181, 209, 674, 682, 744, 764
BceAI ACGGC 1 cut(s) 254
BciVI GTATCC 1 cut(s) 937
BclI TGATCA 1 cut(s) 790
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 2 cut(s) 114, 809
BfmI CTRYAG 1 cut(s) 708
BfoI RGCGCY 1 cut(s) 144
BfrI CTTAAG 1 cut(s) 775
BfuI GTATCC 1 cut(s) 937
BisI GCNGC 2 cut(s) 167, 893
BlsI GCNGC 2 cut(s) 168, 894
BmcAI AGTACT 1 cut(s) 314
Bme1390I CCNGG 1 cut(s) 61
Bme18I GGWCC 2 cut(s) 103, 448
BmeT110I CYCGRG 2 cut(s) 83, 806
BmgT120I GGNCC 2 cut(s) 103, 448
BmiI GGNNCC 3 cut(s) 121, 322, 426
BmrFI CCNGG 1 cut(s) 61
BmsI GCATC 3 cut(s) 682, 688, 711
BpiI GAAGAC 1 cut(s) 612
BpuEI CTTGAG 1 cut(s) 320
BpuMI CCSGG 1 cut(s) 61
Bsa29I ATCGAT 1 cut(s) 126
BsaAI YACGTR 1 cut(s) 543
BsaHI GRCGYC 1 cut(s) 999
BsaJI CCNNGG 1 cut(s) 84
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 3 cut(s) 37, 276, 379
Bse1I ACTGG 1 cut(s) 74
Bse3DI GCAATG 2 cut(s) 167, 385
BseCI ATCGAT 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 84
BseGI GGATG 4 cut(s) 461, 619, 685, 697
BseLI CCNNNNNNNGG 3 cut(s) 37, 276, 379
BseMI GCAATG 2 cut(s) 167, 385
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 904
Bsh1285I CGRYCG 1 cut(s) 289
BshFI GGCC 1 cut(s) 212
BshNI GGYRCC 1 cut(s) 320
BshVI ATCGAT 1 cut(s) 126
BsiEI CGRYCG 1 cut(s) 289
BsiHKAI GWGCWC 2 cut(s) 48, 81
BsiHKCI CYCGRG 2 cut(s) 83, 806
BsiSI CCGG 1 cut(s) 61
BslI CCNNNNNNNGG 3 cut(s) 37, 276, 379
BsmAI GTCTC 2 cut(s) 114, 809
BsmBI CGTCTC 1 cut(s) 809
BsmI GAATGC 1 cut(s) 637
BsnI GGCC 1 cut(s) 212
BsoBI CYCGRG 2 cut(s) 83, 806
Bsp1286I GDGCHC 2 cut(s) 48, 81
Bsp143I GATC 6 cut(s) 8, 217, 274, 790, 817, 928
BspACI CCGC 7 cut(s) 28, 41, 166, 376, 653, 659, 665
BspANI GGCC 1 cut(s) 212
BspCNI CTCAG 1 cut(s) 157
BspDI ATCGAT 1 cut(s) 126
BspLI GGNNCC 3 cut(s) 121, 322, 426
BspPI GGATC 1 cut(s) 3
BspT107I GGYRCC 1 cut(s) 320
BspTI CTTAAG 1 cut(s) 775
BsrDI GCAATG 2 cut(s) 167, 385
BsrI ACTGG 1 cut(s) 74
BssECI CCNNGG 1 cut(s) 84
BssMI GATC 6 cut(s) 8, 217, 274, 790, 817, 928
BssNI GRCGYC 1 cut(s) 999
Bst4CI ACNGT 3 cut(s) 583, 949, 965
BstACI GRCGYC 1 cut(s) 999
BstAFI CTTAAG 1 cut(s) 775
BstBAI YACGTR 1 cut(s) 543
BstC8I GCNNGC 1 cut(s) 705
BstDEI CTNAG 1 cut(s) 144
BstF5I GGATG 4 cut(s) 461, 619, 685, 697
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 4 cut(s) 143, 198, 703, 825
BstKTI GATC 6 cut(s) 11, 220, 277, 793, 820, 931
BstMAI GTCTC 2 cut(s) 114, 809
BstMBI GATC 6 cut(s) 8, 217, 274, 790, 817, 928
BstMCI CGRYCG 1 cut(s) 289
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 708
BstV1I GCAGC 1 cut(s) 904
BstV2I GAAGAC 1 cut(s) 612
BstX2I RGATCY 1 cut(s) 8
BstXI CCANNNNNNTGG 1 cut(s) 208
BstYI RGATCY 1 cut(s) 8
Bsu15I ATCGAT 1 cut(s) 126
BsuI GTATCC 1 cut(s) 937
BsuRI GGCC 1 cut(s) 212
BsuTUI ATCGAT 1 cut(s) 126
BtsCI GGATG 4 cut(s) 461, 619, 685, 697
BtsIMutI CAGTG 3 cut(s) 345, 909, 1026
Cac8I GCNNGC 1 cut(s) 705
CaiI CAGNNNCTG 1 cut(s) 106
CfoI GCGC 4 cut(s) 143, 198, 703, 825
Cfr13I GGNCC 2 cut(s) 103, 448
ClaI ATCGAT 1 cut(s) 126
Csp6I GTAC 3 cut(s) 156, 313, 340
CviAII CATG 4 cut(s) 208, 482, 725, 989
CviQI GTAC 3 cut(s) 156, 313, 340
DdeI CTNAG 1 cut(s) 144
DpnI GATC 6 cut(s) 10, 219, 276, 792, 819, 930
DpnII GATC 6 cut(s) 8, 217, 274, 790, 817, 928
DraI TTTAAA 3 cut(s) 522, 550, 936
EaeI YGGCCR 1 cut(s) 210
EciI GGCGGA 1 cut(s) 56
Ecl136II GAGCTC 2 cut(s) 46, 79
Eco24I GRGCYC 2 cut(s) 48, 81
Eco32I GATATC 1 cut(s) 301
Eco47I GGWCC 2 cut(s) 103, 448
Eco47III AGCGCT 1 cut(s) 142
Eco53kI GAGCTC 2 cut(s) 46, 79
Eco57I CTGAAG 2 cut(s) 438, 725
Eco72I CACGTG 1 cut(s) 543
Eco88I CYCGRG 2 cut(s) 83, 806
EcoICRI GAGCTC 2 cut(s) 46, 79
EcoO109I RGGNCCY 2 cut(s) 103, 448
EcoRV GATATC 1 cut(s) 301
EcoT22I ATGCAT 1 cut(s) 726
EcoT38I GRGCYC 2 cut(s) 48, 81
Esp3I CGTCTC 1 cut(s) 809
FaeI CATG 4 cut(s) 211, 485, 728, 992
FaiI YATR 8 cut(s) 209, 483, 573, 677, 710, 726, 990, 1038
FatI CATG 4 cut(s) 207, 481, 724, 988
FbaI TGATCA 1 cut(s) 790
Fnu4HI GCNGC 2 cut(s) 167, 893
FokI GGATG 4 cut(s) 448, 626, 692, 704
FriOI GRGCYC 2 cut(s) 48, 81
Fsp4HI GCNGC 2 cut(s) 167, 893
GlaI GCGC 4 cut(s) 142, 197, 702, 824
GluI GCNGC 2 cut(s) 167, 893
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 1 cut(s) 212
HapII CCGG 1 cut(s) 61
HhaI GCGC 4 cut(s) 143, 198, 703, 825
Hin1I GRCGYC 1 cut(s) 999
Hin1II CATG 4 cut(s) 211, 485, 728, 992
Hin6I GCGC 4 cut(s) 141, 196, 701, 823
HinP1I GCGC 4 cut(s) 141, 196, 701, 823
HinfI GANTC 2 cut(s) 363, 809
HpaII CCGG 1 cut(s) 61
HphI GGTGA 4 cut(s) 85, 614, 640, 949
Hpy166II GTNNAC 4 cut(s) 156, 238, 731, 957
Hpy188III TCNNGA 2 cut(s) 788, 806
Hpy8I GTNNAC 4 cut(s) 156, 238, 731, 957
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 3 cut(s) 142, 593, 977
HpyCH4III ACNGT 3 cut(s) 583, 949, 965
HpyCH4IV ACGT 3 cut(s) 542, 877, 999
HpyCH4V TGCA 5 cut(s) 468, 635, 695, 724, 892
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 1 cut(s) 144
HpySE526I ACGT 3 cut(s) 542, 877, 999
Hsp92I GRCGYC 1 cut(s) 999
Hsp92II CATG 4 cut(s) 211, 485, 728, 992
HspAI GCGC 4 cut(s) 141, 196, 701, 823
Ksp22I TGATCA 1 cut(s) 790
Kzo9I GATC 6 cut(s) 8, 217, 274, 790, 817, 928
LmnI GCTCC 8 cut(s) 43, 51, 76, 84, 119, 279, 430, 900
Lsp1109I GCAGC 1 cut(s) 904
LweI GCATC 3 cut(s) 682, 688, 711
MaeII ACGT 3 cut(s) 542, 877, 999
MaeIII GTNAC 2 cut(s) 810, 830
MalI GATC 6 cut(s) 10, 219, 276, 792, 819, 930
MboI GATC 6 cut(s) 8, 217, 274, 790, 817, 928
MboII GAAGA 3 cut(s) 572, 617, 731
MfeI CAATTG 1 cut(s) 1017
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 2 cut(s) 48, 81
MlsI TGGCCA 1 cut(s) 212
MluCI AATT 4 cut(s) 329, 533, 783, 1017
MluNI TGGCCA 1 cut(s) 212
MlyI GAGTC 1 cut(s) 818
MmeI TCCRAC 2 cut(s) 54, 423
Mox20I TGGCCA 1 cut(s) 212
Mph1103I ATGCAT 1 cut(s) 726
MscI TGGCCA 1 cut(s) 212
MseI TTAA 5 cut(s) 521, 549, 776, 882, 935
MslI CAYNNNNRTG 2 cut(s) 206, 614
Msp20I TGGCCA 1 cut(s) 212
MspA1I CMGCKG 1 cut(s) 971
MspCI CTTAAG 1 cut(s) 775
MspI CCGG 1 cut(s) 61
MspR9I CCNGG 1 cut(s) 61
MssI GTTTAAAC 1 cut(s) 550
MunI CAATTG 1 cut(s) 1017
Mva1269I GAATGC 1 cut(s) 637
MwoI GCNNNNNNNGC 1 cut(s) 166
NciI CCSGG 1 cut(s) 61
NdeII GATC 6 cut(s) 8, 217, 274, 790, 817, 928
NlaIII CATG 4 cut(s) 211, 485, 728, 992
NlaIV GGNNCC 3 cut(s) 121, 322, 426
NmeAIII GCCGAG 2 cut(s) 17, 91
NmuCI GTSAC 1 cut(s) 810
NsiI ATGCAT 1 cut(s) 726
OliI CACNNNNGTG 1 cut(s) 614
PaeR7I CTCGAG 1 cut(s) 806
PcsI WCGNNNNNNNCGW 3 cut(s) 61, 123, 324
PctI GAATGC 1 cut(s) 637
PfeI GAWTC 1 cut(s) 363
PkrI GCNGC 2 cut(s) 168, 894
PleI GAGTC 1 cut(s) 817
PmaCI CACGTG 1 cut(s) 543
PmeI GTTTAAAC 1 cut(s) 550
PmlI CACGTG 1 cut(s) 543
PpsI GAGTC 1 cut(s) 817
Ppu21I YACGTR 1 cut(s) 543
PpuMI RGGWCCY 2 cut(s) 103, 448
Psp124BI GAGCTC 2 cut(s) 48, 81
Psp5II RGGWCCY 2 cut(s) 103, 448
PspCI CACGTG 1 cut(s) 543
PspN4I GGNNCC 3 cut(s) 121, 322, 426
PspPI GGNCC 2 cut(s) 103, 448
PspPPI RGGWCCY 2 cut(s) 103, 448
PstNI CAGNNNCTG 1 cut(s) 106
PsuI RGATCY 1 cut(s) 8
PvuII CAGCTG 1 cut(s) 971
RsaI GTAC 3 cut(s) 157, 314, 341
RsaNI GTAC 3 cut(s) 156, 313, 340
RseI CAYNNNNRTG 2 cut(s) 206, 614
SacI GAGCTC 2 cut(s) 48, 81
SaqAI TTAA 5 cut(s) 521, 549, 776, 882, 935
SatI GCNGC 2 cut(s) 167, 893
Sau3AI GATC 6 cut(s) 8, 217, 274, 790, 817, 928
Sau96I GGNCC 2 cut(s) 103, 448
ScaI AGTACT 1 cut(s) 314
SchI GAGTC 1 cut(s) 818
ScrFI CCNGG 1 cut(s) 61
SduI GDGCHC 2 cut(s) 48, 81
SfaNI GCATC 3 cut(s) 682, 688, 711
SfcI CTRYAG 1 cut(s) 708
Sfr274I CTCGAG 1 cut(s) 806
SinI GGWCC 2 cut(s) 103, 448
SlaI CTCGAG 1 cut(s) 806
SmiMI CAYNNNNRTG 2 cut(s) 206, 614
SmlI CTYRAG 3 cut(s) 335, 775, 806
SmoI CTYRAG 3 cut(s) 335, 775, 806
Sse9I AATT 4 cut(s) 329, 533, 783, 1017
SsiI CCGC 7 cut(s) 28, 41, 166, 376, 653, 659, 665
SstI GAGCTC 2 cut(s) 48, 81
StyD4I CCNGG 1 cut(s) 59
TaaI ACNGT 3 cut(s) 583, 949, 965
TaiI ACGT 3 cut(s) 545, 880, 1002
TaqI TCGA 7 cut(s) 55, 126, 204, 289, 594, 719, 807
TaqII GACCGA 1 cut(s) 275
TasI AATT 4 cut(s) 329, 533, 783, 1017
TatI WGTACW 2 cut(s) 312, 339
TauI GCSGC 1 cut(s) 169
TfiI GAWTC 1 cut(s) 363
Tru1I TTAA 5 cut(s) 521, 549, 776, 882, 935
Tru9I TTAA 5 cut(s) 521, 549, 776, 882, 935
TscAI CASTG 3 cut(s) 352, 916, 1033
TseFI GTSAC 1 cut(s) 810
TseI GCWGC 1 cut(s) 892
Tsp45I GTSAC 1 cut(s) 810
TspDTI ATGAA 1 cut(s) 498
TspGWI ACGGA 1 cut(s) 626
TspRI CASTG 3 cut(s) 352, 916, 1033
Vha464I CTTAAG 1 cut(s) 775
VpaK11BI GGWCC 2 cut(s) 103, 448
XapI RAATTY 1 cut(s) 783
XhoI CTCGAG 1 cut(s) 806
ZraI GACGTC 1 cut(s) 1000
ZrmI AGTACT 1 cut(s) 314
Zsp2I ATGCAT 1 cut(s) 726
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.