AT1G78720

Belongs to the SecY SEC61-alpha family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0006517
Physical Location & Seq
Forward (+)
29605457 .. 29607678
2222 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78720.2

Sequence Viewer

Length: 1428 bp
ATGGTAGGAGGGTTTAGAGTGATTCATCTTGTGAGACCGTTCCTTGCATTCTTACCAGAAGTCCAATCTCCAGAAAGGAAGATTCCGTTTAGAGAGAAAGTCATATACACTGTGATCTCTCTCTTCATCTTCTTGGTTTGTAGTCAATTGCCACTTTATGGAATCCATTCCACTACAGGCGCGGATCCATTCTATTGGATGCGCGTCATTCTTGCTTCAAGCCGAGGTACTGTTATGGAGCTTGGTATTACACCAATCGTCACCTCCGGAATGGTTATGCAGCTTCTTGCTGGTTCCAAGATCATTGAAATCGATAACAATGTCCGTGAAGACCGTGCACTCTTGAATGGTGCACAGAAGCTGTTGGGAATCCTCATCGCGGTTGGCCAAGCAGTTGCATATGTTCTCTCTGGGATGTATGGTAGTGTTGGGGAACTAGGAGTTGGTAATGCTATTCTTATCATAGTTCAGCTCTGTTTTGCTGCCATTATCGTTCTTTGTTTAGATGAGCTTCTTCAGAAAGGTTATGGCCTCGGTTCTGGTATTTCCCTTTTCATTGCTACTAATATCTGTGAAAGCATTATATGGAAAGCATTCAGTCCTACAACCATCAACAGTGGGCGTGGAGCTCAATTTGAAGGAGCTGTTATTGCTCTTTTCCACCTTCTCATTACTCGAACGGATAAAGTCCGCGCACTTCGTGAAGCGTTTTTCAGGCAGAACCTTCCCAATGTGACGAATCTGCATGCCACAGTCTTGATCTTTCTGATAGTGATTTACTTTCAAGGCTTTCGGGTAGTTTTACCAGTGAGATCAAAGAATGCTCGTGGACAACGAGGCTCTTATCCTATCAAATTGTTCTACACCTCCAACATGCCTATCATCTTGCAGTCAGCTCTTGTTTCCAATATCTACTTCATCTCTCAGATATTATACAGAAAGTTTGGTGGGAACTTTTTGGTGAACTTAATCGGTACGTGGAAGGAGTCAGAATACAGCGGGCAATCTATCCCCGTTGGTGGTATTGCGTACTACATAACCGCTCCGTCAAGCTTAGCTGAGATGGCAACTCATCCTTTTCACGCTCTGTTCTATCTTGTGTTCATGTTAGCCGCGTGTGCGTTGTTCTCTAAAACCTGGATTGAAGTCTCCGGTTCATCAGCCAAAGATGTCGCCAGACAACTAAGAGAACAGCAAATGGTAATGCCTGGTCACCGAGACTCAAACCTTCAAAAGGAACTGAACCGATACATTCCCACGGCTGCAGCTTTTGGTGGTCTGTGTATCGGTGCACTCACTGTCTTGGCTGATTTAATGGGAGCTATTGGGTCAGGCACTGGAATCCTTCTTGCGGTTACAATCATATATCAGTATTTCGAAACCTTCGAAAAAGAAAAAGCAAGCGAGCTAGGTTTCTTCGGTTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110
Pfam Domains
Protein Families
Plug_translocon SecY

Protein Analysis

475

Amino Acids

52.13

Weight (kDa)

9.17

Isoelectric Point (pI)

33.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Plug_translocon PF10559 42 - 76 2.1e-17 Plug domain of Sec61p
SecY PF00344 77 - 459 5.9e-80 SecY
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 158
AccBSI CCGCTC 1 cut(s) 1043
AccII CGCG 5 cut(s) 182, 204, 380, 693, 1115
AccIII TCCGGA 1 cut(s) 266
AciI CCGC 7 cut(s) 182, 380, 691, 999, 1041, 1113, 1352
AclWI GGATC 2 cut(s) 179, 192
AcoI YGGCCR 1 cut(s) 385
AcuI CTGAAG 1 cut(s) 500
AdeI CACNNNGTG 1 cut(s) 701
AfaI GTAC 3 cut(s) 229, 976, 1031
AfiI CCNNNNNNNGG 5 cut(s) 158, 379, 1019, 1234, 1351
AgsI TTSAA 7 cut(s) 219, 308, 346, 638, 785, 1145, 1232
AjnI CCWGG 2 cut(s) 1136, 1207
AjuI GAANNNNNNNTTGG 4 cut(s) 426, 458, 899, 931
Alw21I GWGCWC 4 cut(s) 340, 355, 631, 1294
Alw26I GTCTC 3 cut(s) 28, 1153, 1212
Alw44I GTGCAC 3 cut(s) 336, 351, 1290
AlwI GGATC 2 cut(s) 179, 192
AlwNI CAGNNNCTG 2 cut(s) 361, 1337
Aor13HI TCCGGA 1 cut(s) 266
AoxI GGCC 2 cut(s) 385, 529
ApaLI GTGCAC 3 cut(s) 336, 351, 1290
ApeKI GCWGC 4 cut(s) 280, 482, 1262, 1265
Asp700I GAANNNNTTC 2 cut(s) 166, 593
AspLEI GCGC 3 cut(s) 182, 204, 695
AsuHPI GGTGA 3 cut(s) 253, 973, 1205
AsuII TTCGAA 2 cut(s) 1377, 1386
BaeGI GKGCMC 3 cut(s) 340, 355, 1294
BalI TGGCCA 1 cut(s) 387
BamHI GGATCC 1 cut(s) 184
BanII GRGCYC 1 cut(s) 631
BauI CACGAG 1 cut(s) 825
BbsI GAAGAC 1 cut(s) 336
Bbv12I GWGCWC 4 cut(s) 340, 355, 631, 1294
BbvI GCAGC 4 cut(s) 292, 469, 1249, 1277
BccI CCATC 2 cut(s) 617, 1057
BceAI ACGGC 1 cut(s) 1275
BciT130I CCWGG 2 cut(s) 1138, 1209
BcoDI GTCTC 3 cut(s) 28, 1153, 1212
BfaI CTAG 2 cut(s) 437, 1409
BfmI CTRYAG 2 cut(s) 174, 1263
BisI GCNGC 5 cut(s) 281, 483, 1113, 1263, 1266
BlpI GCTNAGC 1 cut(s) 1054
BlsI GCNGC 5 cut(s) 282, 484, 1114, 1264, 1267
Bme1390I CCNGG 2 cut(s) 1138, 1209
BmiI GGNNCC 2 cut(s) 186, 295
BmrFI CCNGG 2 cut(s) 1138, 1209
BmsI GCATC 1 cut(s) 189
BpiI GAAGAC 1 cut(s) 336
BpmI CTGGAG 1 cut(s) 54
Bpu1102I GCTNAGC 1 cut(s) 1054
Bpu14I TTCGAA 2 cut(s) 1377, 1386
Bsa29I ATCGAT 1 cut(s) 312
BsaAI YACGTR 1 cut(s) 978
BsaI GGTCTC 1 cut(s) 28
BsaJI CCNNGG 3 cut(s) 223, 532, 1257
BsaWI WCCGGW 2 cut(s) 266, 1151
Bsc4I CCNNNNNNNGG 5 cut(s) 158, 379, 1019, 1234, 1351
Bse1I ACTGG 2 cut(s) 806, 1342
Bse3DI GCAATG 1 cut(s) 555
BseAI TCCGGA 1 cut(s) 266
BseBI CCWGG 2 cut(s) 1138, 1209
BseCI ATCGAT 1 cut(s) 312
BseDI CCNNGG 3 cut(s) 223, 532, 1257
BseGI GGATG 3 cut(s) 204, 420, 1072
BseLI CCNNNNNNNGG 5 cut(s) 158, 379, 1019, 1234, 1351
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 2 cut(s) 938, 1050
BseNI ACTGG 2 cut(s) 806, 1342
BseSI GKGCMC 3 cut(s) 340, 355, 1294
BseXI GCAGC 4 cut(s) 292, 469, 1249, 1277
Bsh1236I CGCG 5 cut(s) 182, 204, 380, 693, 1115
BshFI GGCC 2 cut(s) 387, 531
BshVI ATCGAT 1 cut(s) 312
BsiHKAI GWGCWC 4 cut(s) 340, 355, 631, 1294
BsiSI CCGG 2 cut(s) 267, 1152
BslI CCNNNNNNNGG 5 cut(s) 158, 379, 1019, 1234, 1351
BsmAI GTCTC 3 cut(s) 28, 1153, 1212
BsmI GAATGC 3 cut(s) 47, 593, 826
BsnI GGCC 2 cut(s) 387, 531
Bso31I GGTCTC 1 cut(s) 28
Bsp119I TTCGAA 2 cut(s) 1377, 1386
Bsp1286I GDGCHC 4 cut(s) 340, 355, 631, 1294
Bsp13I TCCGGA 1 cut(s) 266
Bsp143I GATC 5 cut(s) 114, 184, 300, 759, 812
Bsp1720I GCTNAGC 1 cut(s) 1054
BspACI CCGC 7 cut(s) 182, 380, 691, 999, 1041, 1113, 1352
BspANI GGCC 2 cut(s) 387, 531
BspCNI CTCAG 2 cut(s) 937, 1051
BspDI ATCGAT 1 cut(s) 312
BspEI TCCGGA 1 cut(s) 266
BspFNI CGCG 5 cut(s) 182, 204, 380, 693, 1115
BspLI GGNNCC 2 cut(s) 186, 295
BspMAI CTGCAG 1 cut(s) 1267
BspPI GGATC 2 cut(s) 179, 192
BspT104I TTCGAA 2 cut(s) 1377, 1386
BspTNI GGTCTC 1 cut(s) 28
BsrBI CCGCTC 1 cut(s) 1043
BsrDI GCAATG 1 cut(s) 555
BsrI ACTGG 2 cut(s) 806, 1342
BssECI CCNNGG 3 cut(s) 223, 532, 1257
BssMI GATC 5 cut(s) 114, 184, 300, 759, 812
BssSI CACGAG 1 cut(s) 825
Bst2BI CACGAG 1 cut(s) 825
Bst2UI CCWGG 2 cut(s) 1138, 1209
Bst4CI ACNGT 7 cut(s) 39, 112, 232, 335, 617, 754, 1300
Bst6I CTCTTC 1 cut(s) 128
BstBAI YACGTR 1 cut(s) 978
BstBI TTCGAA 2 cut(s) 1377, 1386
BstC8I GCNNGC 4 cut(s) 747, 1001, 1402, 1406
BstDEI CTNAG 4 cut(s) 924, 1054, 1059, 1184
BstDSI CCRYGG 1 cut(s) 1257
BstEII GGTNACC 1 cut(s) 1211
BstENI CCTNNNNNAGG 1 cut(s) 1232
BstF5I GGATG 3 cut(s) 204, 420, 1072
BstFNI CGCG 5 cut(s) 182, 204, 380, 693, 1115
BstHHI GCGC 3 cut(s) 182, 204, 695
BstKTI GATC 5 cut(s) 117, 187, 303, 762, 815
BstMAI GTCTC 3 cut(s) 28, 1153, 1212
BstMBI GATC 5 cut(s) 114, 184, 300, 759, 812
BstMWI GCNNNNNNNGC 3 cut(s) 650, 1064, 1118
BstNI CCWGG 2 cut(s) 1138, 1209
BstNSI RCATGY 2 cut(s) 749, 877
BstPI GGTNACC 1 cut(s) 1211
BstSCI CCNGG 2 cut(s) 1136, 1207
BstSFI CTRYAG 2 cut(s) 174, 1263
BstSLI GKGCMC 3 cut(s) 340, 355, 1294
BstUI CGCG 5 cut(s) 182, 204, 380, 693, 1115
BstV1I GCAGC 4 cut(s) 292, 469, 1249, 1277
BstV2I GAAGAC 1 cut(s) 336
BstX2I RGATCY 1 cut(s) 184
BstXI CCANNNNNNTGG 1 cut(s) 195
BstYI RGATCY 1 cut(s) 184
Bsu15I ATCGAT 1 cut(s) 312
BsuRI GGCC 2 cut(s) 387, 531
BsuTUI ATCGAT 1 cut(s) 312
BtgI CCRYGG 1 cut(s) 1257
BtgZI GCGATG 1 cut(s) 361
BtsCI GGATG 3 cut(s) 204, 420, 1072
BtsIMutI CAGTG 5 cut(s) 108, 622, 813, 1296, 1335
Cac8I GCNNGC 4 cut(s) 747, 1001, 1402, 1406
CaiI CAGNNNCTG 2 cut(s) 361, 1337
CfoI GCGC 3 cut(s) 182, 204, 695
ClaI ATCGAT 1 cut(s) 312
CseI GACGC 1 cut(s) 193
Csp6I GTAC 3 cut(s) 228, 975, 1030
CviAII CATG 3 cut(s) 746, 874, 1105
CviQI GTAC 3 cut(s) 228, 975, 1030
DdeI CTNAG 4 cut(s) 924, 1054, 1059, 1184
DpnI GATC 5 cut(s) 116, 186, 302, 761, 814
DpnII GATC 5 cut(s) 114, 184, 300, 759, 812
DraIII CACNNNGTG 1 cut(s) 701
EaeI YGGCCR 1 cut(s) 385
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Ecl136II GAGCTC 1 cut(s) 629
Eco24I GRGCYC 1 cut(s) 631
Eco31I GGTCTC 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 629
Eco57I CTGAAG 1 cut(s) 500
Eco91I GGTNACC 1 cut(s) 1211
EcoICRI GAGCTC 1 cut(s) 629
EcoNI CCTNNNNNAGG 1 cut(s) 1232
EcoO65I GGTNACC 1 cut(s) 1211
EcoRII CCWGG 2 cut(s) 1136, 1207
EcoT38I GRGCYC 1 cut(s) 631
FaeI CATG 3 cut(s) 749, 877, 1108
FatI CATG 3 cut(s) 745, 873, 1104
FauI CCCGC 1 cut(s) 992
FauNDI CATATG 1 cut(s) 400
Fnu4HI GCNGC 5 cut(s) 281, 483, 1113, 1263, 1266
FokI GGATG 3 cut(s) 211, 427, 1059
FriOI GRGCYC 1 cut(s) 631
Fsp4HI GCNGC 5 cut(s) 281, 483, 1113, 1263, 1266
FspBI CTAG 2 cut(s) 437, 1409
GlaI GCGC 3 cut(s) 181, 203, 694
GluI GCNGC 5 cut(s) 281, 483, 1113, 1263, 1266
GsuI CTGGAG 1 cut(s) 54
HaeIII GGCC 2 cut(s) 387, 531
HapII CCGG 2 cut(s) 267, 1152
HgaI GACGC 1 cut(s) 193
HhaI GCGC 3 cut(s) 182, 204, 695
Hin1II CATG 3 cut(s) 749, 877, 1108
Hin6I GCGC 3 cut(s) 180, 202, 693
HinP1I GCGC 3 cut(s) 180, 202, 693
HindIII AAGCTT 1 cut(s) 1051
HinfI GANTC 8 cut(s) 22, 82, 162, 369, 739, 986, 1220, 1341
HpaII CCGG 2 cut(s) 267, 1152
HphI GGTGA 3 cut(s) 253, 973, 1205
Hpy166II GTNNAC 5 cut(s) 338, 353, 830, 964, 1292
Hpy188I TCNGA 4 cut(s) 519, 768, 927, 991
Hpy188III TCNNGA 5 cut(s) 71, 267, 343, 701, 757
Hpy8I GTNNAC 5 cut(s) 338, 353, 830, 964, 1292
HpyAV CCTTC 7 cut(s) 632, 674, 734, 976, 1238, 1355, 1393
HpyCH4III ACNGT 7 cut(s) 39, 112, 232, 335, 617, 754, 1300
HpyCH4IV ACGT 1 cut(s) 977
HpyCH4V TGCA 9 cut(s) 47, 280, 338, 353, 398, 745, 889, 1265, 1292
HpyF10VI GCNNNNNNNGC 3 cut(s) 650, 1064, 1118
HpyF3I CTNAG 4 cut(s) 924, 1054, 1059, 1184
HpySE526I ACGT 1 cut(s) 977
Hsp92II CATG 3 cut(s) 749, 877, 1108
HspAI GCGC 3 cut(s) 180, 202, 693
Kpn2I TCCGGA 1 cut(s) 266
Kzo9I GATC 5 cut(s) 114, 184, 300, 759, 812
LmnI GCTCC 5 cut(s) 238, 626, 641, 1048, 1319
Lsp1109I GCAGC 4 cut(s) 292, 469, 1249, 1277
LweI GCATC 1 cut(s) 189
MaeI CTAG 2 cut(s) 437, 1409
MaeII ACGT 1 cut(s) 977
MaeIII GTNAC 4 cut(s) 259, 733, 1211, 1354
MalI GATC 5 cut(s) 116, 186, 302, 761, 814
MbiI CCGCTC 1 cut(s) 1043
MboI GATC 5 cut(s) 114, 184, 300, 759, 812
MboII GAAGA 6 cut(s) 91, 115, 121, 341, 506, 1408
MfeI CAATTG 1 cut(s) 146
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 4 cut(s) 340, 355, 631, 1294
MlsI TGGCCA 1 cut(s) 387
MluCI AATT 3 cut(s) 146, 632, 854
MluNI TGGCCA 1 cut(s) 387
MlyI GAGTC 2 cut(s) 995, 1214
MmeI TCCRAC 1 cut(s) 894
MnlI CCTC 6 cut(s) 218, 274, 383, 542, 830, 877
Mox20I TGGCCA 1 cut(s) 387
MroI TCCGGA 1 cut(s) 266
MroXI GAANNNNTTC 2 cut(s) 166, 593
MscI TGGCCA 1 cut(s) 387
MseI TTAA 2 cut(s) 968, 1313
Msp20I TGGCCA 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 999
MspI CCGG 2 cut(s) 267, 1152
MspR9I CCNGG 2 cut(s) 1138, 1209
MunI CAATTG 1 cut(s) 146
Mva1269I GAATGC 3 cut(s) 47, 593, 826
MvaI CCWGG 2 cut(s) 1138, 1209
MvnI CGCG 5 cut(s) 182, 204, 380, 693, 1115
MwoI GCNNNNNNNGC 3 cut(s) 650, 1064, 1118
NdeI CATATG 1 cut(s) 400
NdeII GATC 5 cut(s) 114, 184, 300, 759, 812
NlaIII CATG 3 cut(s) 749, 877, 1108
NlaIV GGNNCC 2 cut(s) 186, 295
NmeAIII GCCGAG 1 cut(s) 248
NmuCI GTSAC 3 cut(s) 259, 733, 1211
NspI RCATGY 2 cut(s) 749, 877
NspV TTCGAA 2 cut(s) 1377, 1386
PaeI GCATGC 1 cut(s) 749
PcsI WCGNNNNNNNCGW 2 cut(s) 832, 1383
PctI GAATGC 3 cut(s) 47, 593, 826
PdmI GAANNNNTTC 2 cut(s) 166, 593
PfeI GAWTC 6 cut(s) 22, 82, 162, 369, 739, 1341
PflMI CCANNNNNTGG 1 cut(s) 158
PkrI GCNGC 5 cut(s) 282, 484, 1114, 1264, 1267
PleI GAGTC 2 cut(s) 994, 1214
PpsI GAGTC 2 cut(s) 994, 1214
Ppu21I YACGTR 1 cut(s) 978
Psp124BI GAGCTC 1 cut(s) 631
Psp6I CCWGG 2 cut(s) 1136, 1207
PspEI GGTNACC 1 cut(s) 1211
PspGI CCWGG 2 cut(s) 1136, 1207
PspN4I GGNNCC 2 cut(s) 186, 295
PstI CTGCAG 1 cut(s) 1267
PstNI CAGNNNCTG 2 cut(s) 361, 1337
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 3 cut(s) 229, 976, 1031
RsaNI GTAC 3 cut(s) 228, 975, 1030
SacI GAGCTC 1 cut(s) 631
SaqAI TTAA 2 cut(s) 968, 1313
SatI GCNGC 5 cut(s) 281, 483, 1113, 1263, 1266
Sau3AI GATC 5 cut(s) 114, 184, 300, 759, 812
SchI GAGTC 2 cut(s) 995, 1214
ScrFI CCNGG 2 cut(s) 1138, 1209
SduI GDGCHC 4 cut(s) 340, 355, 631, 1294
SfaNI GCATC 1 cut(s) 189
SfcI CTRYAG 2 cut(s) 174, 1263
SfuI TTCGAA 2 cut(s) 1377, 1386
SphI GCATGC 1 cut(s) 749
Sse9I AATT 3 cut(s) 146, 632, 854
SsiI CCGC 7 cut(s) 182, 380, 691, 999, 1041, 1113, 1352
SspMI CTAG 2 cut(s) 437, 1409
SstI GAGCTC 1 cut(s) 631
StyD4I CCNGG 2 cut(s) 1136, 1207
TaaI ACNGT 7 cut(s) 39, 112, 232, 335, 617, 754, 1300
TaiI ACGT 1 cut(s) 980
TaqI TCGA 4 cut(s) 312, 676, 1377, 1386
TasI AATT 3 cut(s) 146, 632, 854
TauI GCSGC 1 cut(s) 1115
TfiI GAWTC 6 cut(s) 22, 82, 162, 369, 739, 1341
Tru1I TTAA 2 cut(s) 968, 1313
Tru9I TTAA 2 cut(s) 968, 1313
TscAI CASTG 5 cut(s) 115, 622, 813, 1303, 1342
TseFI GTSAC 3 cut(s) 259, 733, 1211
TseI GCWGC 4 cut(s) 280, 482, 1262, 1265
Tsp45I GTSAC 3 cut(s) 259, 733, 1211
TspDTI ATGAA 6 cut(s) 14, 115, 544, 907, 1093, 1146
TspGWI ACGGA 4 cut(s) 75, 314, 695, 1035
TspRI CASTG 5 cut(s) 115, 622, 813, 1303, 1342
Van91I CCANNNNNTGG 1 cut(s) 158
VneI GTGCAC 3 cut(s) 336, 351, 1290
XagI CCTNNNNNAGG 1 cut(s) 1232
XceI RCATGY 2 cut(s) 749, 877
XmnI GAANNNNTTC 2 cut(s) 166, 593
XspI CTAG 2 cut(s) 437, 1409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.