Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006517

Physical Location & Seq

Genomic Coordinates Forward (+)

9407939 .. 9409112

Gene Structure 1174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G009370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGCAGGGTGGGGAATTTAGAATGCTACATCTGGTGAGACCATATCTTCGATATCTACCCCAAGCCGAATGTATACACAGCAGAAAGATCACCTTCAAAGAGAAATTCGTATTTACTGCAGCTTCACTGTTCATCTTTCGGGTTTGCAGTCAGTTTCCCCTCTATGGGATAGATTATTCTACGTTTAACAGATTTGATACATTTTACTGGATGCGTGCTATTCTGGCGACAAGTCCTACTGGCACTGTAATGGGGCTCGGTATTAGCCCCATTGTGACATCTGGAATGATCATGAGTTTCTTAGCCAGTTCAAAACTTATTCAAAAGTTGTTGGGAGTCCTCATTGCTGTTGGTCAAGCTGTTACTTATGTGCTATCAGGAATGTACGGCAATGTAGAAAACCTACCAAACGTGACAAACCTACTTGCCACTATCTTCATCTTTCTAATTGTTGTCTACTTGCAATGCTTTCATATGGCTTTGAAAGTGAGATCAAAGGGAGCAGCGTCATCATATCCTATTAAGCTCTTCTATACTTCTAACATGCCCATCATTCTCCAATCCGCTCTTGTCTCGAATCTTTGTTTTGTATCTCATTTTCTTCACAAGAGGTACAATGGGAATAATAATTTCTTGGTGAATCTCATGGGGAAGAGGAAGGAATCTGGCCAGCTCAATATTCTCATTGGTGGTCTAGCTTACTATGTCACTGCACCAGCAAGCTTGGCAGATATGGCGGCCGATCCCATCCACGCAATGTTTTATCTAGTCTTTATGCTTGCAACATGTGCATTGCTATCGAAAACTTGGATCCGATTCTCTGGTTCTTCTGCGAGAGACGTAGCAAAGCAACTCAAGGAACAAAACATGGGGATTCATGGACATAAAGACTCGAGCCTAGAGAAGAAGCTTAATCGCAATATACCTATTGCGGCTGCGCTTGGAGGAATGTGCATTGGTGCCTTGACTGTTGTGGCAGATCTCATGGGAGCAATGGGATCAGTAGCTGGGATTTTGCTTGCTGTTACAATCATATATCAGTGTTGGGAGACATATGAGGAGAAAGAGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0012505 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0022804 GO:0022857 GO:0022884 GO:0031204 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Plug_translocon SecY

Protein Analysis

357

Amino Acids

39.53

Weight (kDa)

9.36

Isoelectric Point (pI)

35.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Plug_translocon	PF10559	44 - 76	1.7e-09	Plug domain of Sec61p
SecY	PF00344	127 - 348	3.8e-34	SecY

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78720 AT1G78720 AT1G78720
fragaria_vesca	FvH4_1g11090
malus_domestica	MD10G1274900.v1.1
prunus_persica	Prupe.4G067500_v2.0.a1
pyrus_communis	pycom10g22950
rosa_chinensis	RchiOBHm_Chr2g0098361 RchiOBHm_Chr5g0011881
rosa_laevigata	RLG00000016794 RLG00000031865
rosa_multiflora	Rmu_co8311821.1_g000001 Rmu_sc0001475.1_g000010 Rmu_sc0042416.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064720 Rroxscaffold_2G00144040
rosa_rugosa	Rorug02G0072500 Rorug04G0459500
rosa_samantha	Rh2AG119600 Rh2BG122700 Rh2CG124300 Rh2DG124400 Rh5AG091000 Rh5DG087200
rosa_wichuraiana	Rw2G009370 Rw5G007950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	959
AccBSI	CCGCTC	1 cut(s)	566
AccI	GTMKAC	2 cut(s)	73, 456
AciI	CCGC	3 cut(s)	564, 737, 932
AclWI	GGATC	4 cut(s)	737, 805, 818, 1006
AcoI	YGGCCR	2 cut(s)	667, 738
AcsI	RAATTY	2 cut(s)	14, 104
AfaI	GTAC	2 cut(s)	386, 614
AfiI	CCNNNNNNNGG	2 cut(s)	164, 165
AflIII	ACRYGT	1 cut(s)	785
AgsI	TTSAA	4 cut(s)	97, 312, 323, 484
AluBI	AGCT	8 cut(s)	122, 359, 526, 673, 698, 723, 910, 1007
AluI	AGCT	8 cut(s)	122, 359, 526, 673, 698, 723, 910, 1007
Alw26I	GTCTC	4 cut(s)	31, 577, 831, 1043
AlwI	GGATC	4 cut(s)	737, 805, 818, 1006
AlwNI	CAGNNNCTG	1 cut(s)	1007
Ama87I	CYCGRG	1 cut(s)	892
AoxI	GGCC	2 cut(s)	667, 738
ApeKI	GCWGC	3 cut(s)	119, 503, 935
ApoI	RAATTY	2 cut(s)	14, 104
ArsI	GACNNNNNNTTYG	2 cut(s)	30, 62
AspLEI	GCGC	1 cut(s)	940
AsuHPI	GGTGA	3 cut(s)	46, 82, 649
AvaI	CYCGRG	1 cut(s)	892
BalI	TGGCCA	1 cut(s)	669
BamHI	GGATCC	1 cut(s)	810
BanI	GGYRCC	1 cut(s)	959
BanII	GRGCYC	1 cut(s)	258
BbvI	GCAGC	3 cut(s)	131, 515, 922
BccI	CCATC	2 cut(s)	557, 755
BceAI	ACGGC	1 cut(s)	403
BcgI	CGANNNNNNTGC	2 cut(s)	780, 814
BclI	TGATCA	1 cut(s)	288
BcoDI	GTCTC	4 cut(s)	31, 577, 831, 1043
BfaI	CTAG	4 cut(s)	695, 767, 899, 1072
BfmI	CTRYAG	1 cut(s)	117
BglII	AGATCT	1 cut(s)	979
BisI	GCNGC	5 cut(s)	120, 504, 738, 933, 936
BlsI	GCNGC	5 cut(s)	121, 505, 739, 934, 937
BmeT110I	CYCGRG	1 cut(s)	892
BmiI	GGNNCC	2 cut(s)	812, 961
BmsI	GCATC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	839
BsaI	GGTCTC	1 cut(s)	31
BsaXI	ACNNNNNCTCC	1 cut(s)	1052
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 165
Bse1I	ACTGG	3 cut(s)	212, 244, 306
Bse3DI	GCAATG	6 cut(s)	342, 397, 470, 762, 791, 999
BseGI	GGATG	2 cut(s)	216, 747
BseLI	CCNNNNNNNGG	2 cut(s)	164, 165
BseMI	GCAATG	6 cut(s)	342, 397, 470, 762, 791, 999
BseNI	ACTGG	3 cut(s)	212, 244, 306
BseRI	GAGGAG	1 cut(s)	1073
BseX3I	CGGCCG	1 cut(s)	738
BseXI	GCAGC	3 cut(s)	131, 515, 922
BseYI	CCCAGC	1 cut(s)	1007
BsgI	GTGCAG	1 cut(s)	696
Bsh1285I	CGRYCG	1 cut(s)	741
BshFI	GGCC	2 cut(s)	669, 740
BshNI	GGYRCC	1 cut(s)	959
BsiEI	CGRYCG	1 cut(s)	741
BsiHKCI	CYCGRG	1 cut(s)	892
BslI	CCNNNNNNNGG	2 cut(s)	164, 165
BsmAI	GTCTC	4 cut(s)	31, 577, 831, 1043
BsmBI	CGTCTC	1 cut(s)	831
BsmI	GAATGC	1 cut(s)	27
BsnI	GGCC	2 cut(s)	669, 740
Bso31I	GGTCTC	1 cut(s)	31
BsoBI	CYCGRG	1 cut(s)	892
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	7 cut(s)	87, 288, 491, 742, 810, 979, 998
BspACI	CCGC	3 cut(s)	564, 737, 932
BspANI	GGCC	2 cut(s)	669, 740
BspHI	TCATGA	1 cut(s)	291
BspLI	GGNNCC	2 cut(s)	812, 961
BspMAI	CTGCAG	1 cut(s)	121
BspPI	GGATC	4 cut(s)	737, 805, 818, 1006
BspQI	GCTCTTC	1 cut(s)	533
BspT107I	GGYRCC	1 cut(s)	959
BspTNI	GGTCTC	1 cut(s)	31
BsrBI	CCGCTC	1 cut(s)	566
BsrDI	GCAATG	6 cut(s)	342, 397, 470, 762, 791, 999
BsrI	ACTGG	3 cut(s)	212, 244, 306
BssMI	GATC	7 cut(s)	87, 288, 491, 742, 810, 979, 998
BssNAI	GTATAC	1 cut(s)	74
Bst1107I	GTATAC	1 cut(s)	74
Bst4CI	ACNGT	3 cut(s)	129, 247, 970
Bst6I	CTCTTC	2 cut(s)	533, 647
BstAPI	GCANNNNNTGC	1 cut(s)	788
BstC8I	GCNNGC	5 cut(s)	216, 671, 721, 780, 1020
BstDEI	CTNAG	1 cut(s)	301
BstF5I	GGATG	2 cut(s)	216, 747
BstHHI	GCGC	1 cut(s)	940
BstKTI	GATC	7 cut(s)	90, 291, 494, 745, 813, 982, 1001
BstMAI	GTCTC	4 cut(s)	31, 577, 831, 1043
BstMBI	GATC	7 cut(s)	87, 288, 491, 742, 810, 979, 998
BstMCI	CGRYCG	1 cut(s)	741
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 725, 734, 788
BstNSI	RCATGY	2 cut(s)	547, 789
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	3 cut(s)	131, 515, 922
BstX2I	RGATCY	2 cut(s)	810, 979
BstYI	RGATCY	2 cut(s)	810, 979
BstZ17I	GTATAC	1 cut(s)	74
BstZI	CGGCCG	1 cut(s)	738
BsuRI	GGCC	2 cut(s)	669, 740
BtsCI	GGATG	2 cut(s)	216, 747
BtsI	GCAGTG	1 cut(s)	708
BtsIMutI	CAGTG	4 cut(s)	125, 243, 708, 1046
Cac8I	GCNNGC	5 cut(s)	216, 671, 721, 780, 1020
CaiI	CAGNNNCTG	1 cut(s)	1007
CciI	TCATGA	1 cut(s)	291
CfoI	GCGC	1 cut(s)	940
CseI	GACGC	1 cut(s)	495
Csp6I	GTAC	2 cut(s)	385, 613
CviAII	CATG	7 cut(s)	292, 544, 646, 786, 868, 878, 985
CviQI	GTAC	2 cut(s)	385, 613
DdeI	CTNAG	1 cut(s)	301
DpnI	GATC	7 cut(s)	89, 290, 493, 744, 812, 981, 1000
DpnII	GATC	7 cut(s)	87, 288, 491, 742, 810, 979, 998
EaeI	YGGCCR	2 cut(s)	667, 738
EagI	CGGCCG	1 cut(s)	738
Eam1104I	CTCTTC	2 cut(s)	533, 647
EarI	CTCTTC	2 cut(s)	533, 647
EclXI	CGGCCG	1 cut(s)	738
Eco24I	GRGCYC	1 cut(s)	258
Eco31I	GGTCTC	1 cut(s)	31
Eco32I	GATATC	1 cut(s)	53
Eco52I	CGGCCG	1 cut(s)	738
Eco88I	CYCGRG	1 cut(s)	892
EcoRV	GATATC	1 cut(s)	53
EcoT38I	GRGCYC	1 cut(s)	258
Esp3I	CGTCTC	1 cut(s)	831
FaeI	CATG	7 cut(s)	295, 547, 649, 789, 871, 881, 988
FalI	AAGNNNNNCTT	2 cut(s)	77, 109
FatI	CATG	7 cut(s)	291, 543, 645, 785, 867, 877, 984
FauNDI	CATATG	2 cut(s)	474, 1054
FbaI	TGATCA	1 cut(s)	288
FblI	GTMKAC	2 cut(s)	73, 456
Fnu4HI	GCNGC	5 cut(s)	120, 504, 738, 933, 936
FokI	GGATG	2 cut(s)	223, 734
FriOI	GRGCYC	1 cut(s)	258
Fsp4HI	GCNGC	5 cut(s)	120, 504, 738, 933, 936
FspBI	CTAG	4 cut(s)	695, 767, 899, 1072
GlaI	GCGC	1 cut(s)	939
GluI	GCNGC	5 cut(s)	120, 504, 738, 933, 936
GsaI	CCCAGC	1 cut(s)	1011
HaeIII	GGCC	2 cut(s)	669, 740
HgaI	GACGC	1 cut(s)	495
HhaI	GCGC	1 cut(s)	940
Hin1II	CATG	7 cut(s)	295, 547, 649, 789, 871, 881, 988
Hin6I	GCGC	1 cut(s)	938
HinP1I	GCGC	1 cut(s)	938
HindIII	AAGCTT	2 cut(s)	721, 908
HinfI	GANTC	7 cut(s)	336, 577, 640, 662, 816, 874, 890
HphI	GGTGA	3 cut(s)	46, 82, 649
Hpy166II	GTNNAC	2 cut(s)	74, 457
Hpy188I	TCNGA	1 cut(s)	815
Hpy188III	TCNNGA	4 cut(s)	282, 292, 378, 574
Hpy8I	GTNNAC	2 cut(s)	74, 457
HpyAV	CCTTC	2 cut(s)	103, 652
HpyCH4III	ACNGT	3 cut(s)	129, 247, 970
HpyCH4IV	ACGT	3 cut(s)	182, 411, 840
HpyCH4V	TGCA	8 cut(s)	4, 119, 147, 463, 713, 782, 791, 954
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 725, 734, 788
HpyF3I	CTNAG	1 cut(s)	301
HpySE526I	ACGT	3 cut(s)	182, 411, 840
Hsp92II	CATG	7 cut(s)	295, 547, 649, 789, 871, 881, 988
HspAI	GCGC	1 cut(s)	938
Ksp22I	TGATCA	1 cut(s)	288
Kzo9I	GATC	7 cut(s)	87, 288, 491, 742, 810, 979, 998
LguI	GCTCTTC	1 cut(s)	533
LmnI	GCTCC	2 cut(s)	500, 989
Lsp1109I	GCAGC	3 cut(s)	131, 515, 922
LweI	GCATC	1 cut(s)	201
MaeI	CTAG	4 cut(s)	695, 767, 899, 1072
MaeII	ACGT	3 cut(s)	182, 411, 840
MaeIII	GTNAC	5 cut(s)	274, 361, 412, 706, 1024
MalI	GATC	7 cut(s)	89, 290, 493, 744, 812, 981, 1000
MbiI	CCGCTC	1 cut(s)	566
MboI	GATC	7 cut(s)	87, 288, 491, 742, 810, 979, 998
MboII	GAAGA	7 cut(s)	38, 427, 520, 593, 664, 819, 916
MflI	RGATCY	2 cut(s)	810, 979
MhlI	GDGCHC	1 cut(s)	258
MlsI	TGGCCA	1 cut(s)	669
MluCI	AATT	4 cut(s)	14, 104, 447, 628
MluNI	TGGCCA	1 cut(s)	669
MlyI	GAGTC	2 cut(s)	345, 884
MnlI	CCTC	6 cut(s)	170, 350, 603, 648, 938, 1051
Mox20I	TGGCCA	1 cut(s)	669
MscI	TGGCCA	1 cut(s)	669
MseI	TTAA	3 cut(s)	186, 522, 912
MslI	CAYNNNNRTG	1 cut(s)	248
Msp20I	TGGCCA	1 cut(s)	669
Mva1269I	GAATGC	1 cut(s)	27
MwoI	GCNNNNNNNGC	4 cut(s)	224, 725, 734, 788
NdeI	CATATG	2 cut(s)	474, 1054
NdeII	GATC	7 cut(s)	87, 288, 491, 742, 810, 979, 998
NlaIII	CATG	7 cut(s)	295, 547, 649, 789, 871, 881, 988
NlaIV	GGNNCC	2 cut(s)	812, 961
NmuCI	GTSAC	3 cut(s)	274, 412, 706
NspI	RCATGY	2 cut(s)	547, 789
PaeR7I	CTCGAG	1 cut(s)	892
PagI	TCATGA	1 cut(s)	291
PciI	ACATGT	1 cut(s)	785
PciSI	GCTCTTC	1 cut(s)	533
PctI	GAATGC	1 cut(s)	27
PfeI	GAWTC	5 cut(s)	577, 640, 662, 816, 874
PkrI	GCNGC	5 cut(s)	121, 505, 739, 934, 937
PleI	GAGTC	2 cut(s)	344, 884
PpsI	GAGTC	2 cut(s)	344, 884
PscI	ACATGT	1 cut(s)	785
PspFI	CCCAGC	1 cut(s)	1007
PspN4I	GGNNCC	2 cut(s)	812, 961
PspXI	VCTCGAGB	1 cut(s)	892
PstI	CTGCAG	1 cut(s)	121
PstNI	CAGNNNCTG	1 cut(s)	1007
PsuI	RGATCY	2 cut(s)	810, 979
RsaI	GTAC	2 cut(s)	386, 614
RsaNI	GTAC	2 cut(s)	385, 613
RseI	CAYNNNNRTG	1 cut(s)	248
SapI	GCTCTTC	1 cut(s)	533
SaqAI	TTAA	3 cut(s)	186, 522, 912
SatI	GCNGC	5 cut(s)	120, 504, 738, 933, 936
Sau3AI	GATC	7 cut(s)	87, 288, 491, 742, 810, 979, 998
SchI	GAGTC	2 cut(s)	345, 884
SduI	GDGCHC	1 cut(s)	258
SfaNI	GCATC	1 cut(s)	201
SfcI	CTRYAG	1 cut(s)	117
Sfr274I	CTCGAG	1 cut(s)	892
SlaI	CTCGAG	1 cut(s)	892
SmiMI	CAYNNNNRTG	1 cut(s)	248
SmlI	CTYRAG	2 cut(s)	854, 892
SmoI	CTYRAG	2 cut(s)	854, 892
Sse9I	AATT	4 cut(s)	14, 104, 447, 628
SsiI	CCGC	3 cut(s)	564, 737, 932
SspI	AATATT	1 cut(s)	679
SspMI	CTAG	4 cut(s)	695, 767, 899, 1072
TaaI	ACNGT	3 cut(s)	129, 247, 970
TaiI	ACGT	3 cut(s)	185, 414, 843
TaqI	TCGA	4 cut(s)	49, 575, 800, 893
TasI	AATT	4 cut(s)	14, 104, 447, 628
TauI	GCSGC	2 cut(s)	740, 935
TfiI	GAWTC	5 cut(s)	577, 640, 662, 816, 874
Tru1I	TTAA	3 cut(s)	186, 522, 912
Tru9I	TTAA	3 cut(s)	186, 522, 912
TscAI	CASTG	4 cut(s)	132, 250, 715, 1046
TseFI	GTSAC	3 cut(s)	274, 412, 706
TseI	GCWGC	3 cut(s)	119, 503, 935
Tsp45I	GTSAC	3 cut(s)	274, 412, 706
TspDTI	ATGAA	4 cut(s)	121, 427, 461, 866
TspRI	CASTG	4 cut(s)	132, 250, 715, 1046
XapI	RAATTY	2 cut(s)	14, 104
XceI	RCATGY	2 cut(s)	547, 789
XhoI	CTCGAG	1 cut(s)	892
XmiI	GTMKAC	2 cut(s)	73, 456
XspI	CTAG	4 cut(s)	695, 767, 899, 1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.