Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0006517

Physical Location & Seq

Genomic Coordinates Forward (+)

6049996 .. 6050523

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g11090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGGGAAGTGGCAGCAATCTGGCCAGTTCAACATTCCCATTGGTGGTCTAGCTTACTATGTCACTGCACCAGGAAGATTGGCAGATATGGCACCCGATCCCATTCGCGCATTATTTTATCTAGTCTTCACACTTGCAATATGTGCATTGTTGTCGAAAACTTGGATCCAAGTTTCTGGTTTTGCTGCGAGAGATGTAGTAAAGAAACTCGAGGCACAAAACATGGGGATTCCTGGACATAAATTTTCGAGCTTAGAGAAGGAACTTAACCACTATGTACCTATTGCGGCTGCGCTTGGAGGAATCTGCATTGGTGCCTTGACTGTTATGGCTGATCTCATGGGAGCAATGGTATCAGGACCTGGGATTTTGCTTGCTGTTACAATCATATATCAGTGTTGTGAGGCATATGAAGAGCAAGATAGTAATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0012505 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0022804 GO:0022857 GO:0022884 GO:0031204 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Plug_translocon SecY

Protein Analysis

145

Amino Acids

15.44

Weight (kDa)

5.56

Isoelectric Point (pI)

30.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SecY	PF00344	32 - 133	5.7e-19	SecY

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78720 AT1G78720 AT1G78720
fragaria_vesca	FvH4_1g11090
malus_domestica	MD10G1274900.v1.1
prunus_persica	Prupe.4G067500_v2.0.a1
pyrus_communis	pycom10g22950
rosa_chinensis	RchiOBHm_Chr2g0098361 RchiOBHm_Chr5g0011881
rosa_laevigata	RLG00000016794 RLG00000031865
rosa_multiflora	Rmu_co8311821.1_g000001 Rmu_sc0001475.1_g000010 Rmu_sc0042416.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064720 Rroxscaffold_2G00144040
rosa_rugosa	Rorug02G0072500 Rorug04G0459500
rosa_samantha	Rh2AG119600 Rh2BG122700 Rh2CG124300 Rh2DG124400 Rh5AG091000 Rh5DG087200
rosa_wichuraiana	Rw2G009370 Rw5G007950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	91, 314
AccII	CGCG	1 cut(s)	108
AciI	CCGC	1 cut(s)	287
AclWI	GGATC	3 cut(s)	92, 160, 173
AcoI	YGGCCR	1 cut(s)	22
AcsI	RAATTY	1 cut(s)	242
AfaI	GTAC	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	31
AjnI	CCWGG	3 cut(s)	70, 232, 361
AluBI	AGCT	2 cut(s)	53, 252
AluI	AGCT	2 cut(s)	53, 252
AlwI	GGATC	3 cut(s)	92, 160, 173
AlwNI	CAGNNNCTG	1 cut(s)	362
Ama87I	CYCGRG	1 cut(s)	209
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	3 cut(s)	13, 185, 290
ApoI	RAATTY	1 cut(s)	242
AspLEI	GCGC	2 cut(s)	110, 295
AspS9I	GGNCC	1 cut(s)	359
AvaI	CYCGRG	1 cut(s)	209
AvaII	GGWCC	1 cut(s)	359
BalI	TGGCCA	1 cut(s)	24
BamHI	GGATCC	1 cut(s)	165
BanI	GGYRCC	2 cut(s)	91, 314
BbsI	GAAGAC	1 cut(s)	118
BbvI	GCAGC	3 cut(s)	25, 172, 277
BcgI	CGANNNNNNTGC	2 cut(s)	135, 169
BciT130I	CCWGG	3 cut(s)	72, 234, 363
BfaI	CTAG	2 cut(s)	50, 122
BisI	GCNGC	4 cut(s)	14, 186, 288, 291
BlsI	GCNGC	4 cut(s)	15, 187, 289, 292
Bme1390I	CCNGG	3 cut(s)	72, 234, 363
Bme18I	GGWCC	1 cut(s)	359
BmeT110I	CYCGRG	1 cut(s)	209
BmgT120I	GGNCC	1 cut(s)	359
BmiI	GGNNCC	3 cut(s)	93, 167, 316
BmrFI	CCNGG	3 cut(s)	72, 234, 363
BpiI	GAAGAC	1 cut(s)	118
BsaJI	CCNNGG	1 cut(s)	362
BsaXI	ACNNNNNCTCC	2 cut(s)	336, 366
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
Bse1I	ACTGG	1 cut(s)	25
Bse3DI	GCAATG	1 cut(s)	354
BseBI	CCWGG	3 cut(s)	72, 234, 363
BseDI	CCNNGG	1 cut(s)	362
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	25
BseXI	GCAGC	3 cut(s)	25, 172, 277
BsgI	GTGCAG	1 cut(s)	51
Bsh1236I	CGCG	1 cut(s)	108
BshFI	GGCC	1 cut(s)	24
BshNI	GGYRCC	2 cut(s)	91, 314
BsiHKCI	CYCGRG	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	44
BsnI	GGCC	1 cut(s)	24
BsoBI	CYCGRG	1 cut(s)	209
Bsp143I	GATC	3 cut(s)	97, 165, 334
BspACI	CCGC	1 cut(s)	287
BspANI	GGCC	1 cut(s)	24
BspFNI	CGCG	1 cut(s)	108
BspLI	GGNNCC	3 cut(s)	93, 167, 316
BspPI	GGATC	3 cut(s)	92, 160, 173
BspQI	GCTCTTC	1 cut(s)	408
BspT107I	GGYRCC	2 cut(s)	91, 314
BsrDI	GCAATG	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	3 cut(s)	97, 165, 334
Bst2UI	CCWGG	3 cut(s)	72, 234, 363
Bst4CI	ACNGT	1 cut(s)	325
Bst6I	CTCTTC	1 cut(s)	408
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	1 cut(s)	253
BstFNI	CGCG	1 cut(s)	108
BstHHI	GCGC	2 cut(s)	110, 295
BstKTI	GATC	3 cut(s)	100, 168, 337
BstMBI	GATC	3 cut(s)	97, 165, 334
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 143
BstNI	CCWGG	3 cut(s)	72, 234, 363
BstSCI	CCNGG	3 cut(s)	70, 232, 361
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	3 cut(s)	25, 172, 277
BstV2I	GAAGAC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	165
BstXI	CCANNNNNNTGG	1 cut(s)	176
BstYI	RGATCY	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	24
BtsI	GCAGTG	1 cut(s)	63
BtsIMutI	CAGTG	2 cut(s)	63, 401
Cac8I	GCNNGC	1 cut(s)	375
CaiI	CAGNNNCTG	1 cut(s)	362
CfoI	GCGC	2 cut(s)	110, 295
Cfr13I	GGNCC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	278
CviAII	CATG	2 cut(s)	223, 340
CviJI	RGCY	5 cut(s)	24, 53, 252, 290, 332
CviKI_1	RGCY	5 cut(s)	24, 53, 252, 290, 332
CviQI	GTAC	1 cut(s)	278
DdeI	CTNAG	1 cut(s)	253
DpnI	GATC	3 cut(s)	99, 167, 336
DpnII	GATC	3 cut(s)	97, 165, 334
EaeI	YGGCCR	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco47I	GGWCC	1 cut(s)	359
Eco88I	CYCGRG	1 cut(s)	209
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRII	CCWGG	3 cut(s)	70, 232, 361
FaeI	CATG	2 cut(s)	226, 343
FatI	CATG	2 cut(s)	222, 339
FauNDI	CATATG	1 cut(s)	409
Fnu4HI	GCNGC	4 cut(s)	14, 186, 288, 291
Fsp4HI	GCNGC	4 cut(s)	14, 186, 288, 291
FspBI	CTAG	2 cut(s)	50, 122
GlaI	GCGC	2 cut(s)	109, 294
GluI	GCNGC	4 cut(s)	14, 186, 288, 291
HaeIII	GGCC	1 cut(s)	24
HhaI	GCGC	2 cut(s)	110, 295
Hin1II	CATG	2 cut(s)	226, 343
Hin6I	GCGC	2 cut(s)	108, 293
HinP1I	GCGC	2 cut(s)	108, 293
HinfI	GANTC	2 cut(s)	229, 303
Hpy188III	TCNNGA	1 cut(s)	357
HpyAV	CCTTC	1 cut(s)	253
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4V	TGCA	4 cut(s)	68, 137, 146, 309
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 143
HpyF3I	CTNAG	1 cut(s)	253
Hsp92II	CATG	2 cut(s)	226, 343
HspAI	GCGC	2 cut(s)	108, 293
Kzo9I	GATC	3 cut(s)	97, 165, 334
LguI	GCTCTTC	1 cut(s)	408
LmnI	GCTCC	1 cut(s)	344
Lsp1109I	GCAGC	3 cut(s)	25, 172, 277
MaeI	CTAG	2 cut(s)	50, 122
MaeIII	GTNAC	2 cut(s)	61, 379
MalI	GATC	3 cut(s)	99, 167, 336
MboI	GATC	3 cut(s)	97, 165, 334
MboII	GAAGA	3 cut(s)	87, 118, 425
MflI	RGATCY	1 cut(s)	165
MlsI	TGGCCA	1 cut(s)	24
MluCI	AATT	1 cut(s)	242
MluNI	TGGCCA	1 cut(s)	24
MnlI	CCTC	3 cut(s)	205, 293, 397
Mox20I	TGGCCA	1 cut(s)	24
MscI	TGGCCA	1 cut(s)	24
MseI	TTAA	1 cut(s)	267
Msp20I	TGGCCA	1 cut(s)	24
MspR9I	CCNGG	3 cut(s)	72, 234, 363
MvaI	CCWGG	3 cut(s)	72, 234, 363
MvnI	CGCG	1 cut(s)	108
MwoI	GCNNNNNNNGC	2 cut(s)	89, 143
NdeI	CATATG	1 cut(s)	409
NdeII	GATC	3 cut(s)	97, 165, 334
NlaIII	CATG	2 cut(s)	226, 343
NlaIV	GGNNCC	3 cut(s)	93, 167, 316
NmuCI	GTSAC	1 cut(s)	61
PaeR7I	CTCGAG	1 cut(s)	209
PciSI	GCTCTTC	1 cut(s)	408
PfeI	GAWTC	2 cut(s)	229, 303
PfoI	TCCNGGA	1 cut(s)	232
PkrI	GCNGC	4 cut(s)	15, 187, 289, 292
PpuMI	RGGWCCY	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	359
Psp6I	CCWGG	3 cut(s)	70, 232, 361
PspGI	CCWGG	3 cut(s)	70, 232, 361
PspN4I	GGNNCC	3 cut(s)	93, 167, 316
PspPI	GGNCC	1 cut(s)	359
PspPPI	RGGWCCY	1 cut(s)	359
PspXI	VCTCGAGB	1 cut(s)	209
PstNI	CAGNNNCTG	1 cut(s)	362
PsuI	RGATCY	1 cut(s)	165
RsaI	GTAC	1 cut(s)	279
RsaNI	GTAC	1 cut(s)	278
SapI	GCTCTTC	1 cut(s)	408
SaqAI	TTAA	1 cut(s)	267
SatI	GCNGC	4 cut(s)	14, 186, 288, 291
Sau3AI	GATC	3 cut(s)	97, 165, 334
Sau96I	GGNCC	1 cut(s)	359
ScrFI	CCNGG	3 cut(s)	72, 234, 363
SetI	ASST	4 cut(s)	55, 254, 283, 364
Sfr274I	CTCGAG	1 cut(s)	209
SinI	GGWCC	1 cut(s)	359
SlaI	CTCGAG	1 cut(s)	209
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
Sse9I	AATT	1 cut(s)	242
SsiI	CCGC	1 cut(s)	287
SspMI	CTAG	2 cut(s)	50, 122
StyD4I	CCNGG	3 cut(s)	70, 232, 361
TaaI	ACNGT	1 cut(s)	325
TaqI	TCGA	3 cut(s)	155, 210, 248
TasI	AATT	1 cut(s)	242
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	2 cut(s)	229, 303
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	2 cut(s)	70, 401
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	3 cut(s)	13, 185, 290
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	1 cut(s)	426
TspRI	CASTG	2 cut(s)	70, 401
VpaK11BI	GGWCC	1 cut(s)	359
XapI	RAATTY	1 cut(s)	242
XhoI	CTCGAG	1 cut(s)	209
XspI	CTAG	2 cut(s)	50, 122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.