Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006517

Physical Location & Seq

Genomic Coordinates Reverse (-)

5694665 .. 5696906

Gene Structure 2242 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0072500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCGGCGATGGCATCAAAGTTGCGTCAGTTGCAGTCCAAGGCTTGCCAAGCGACTCAGTTTGTGTCCAAGCATGGAACTACCTACTACAAGCAGTTGTTAGAGCAGAACAAGCAATACATTCAGGAGCCGGCAACTGTGGAGAAATGCAGTGAGCTGTCAAAGCAATTGTTTTACACTCGACTTGCTAGTCTTCCGGGTCGGAATGAAGCACTGCGGAAGGAACTTGATTATGTCAAGAGTTTGTGGAAGAACAGGCAGGACTTGAAGGTTGAAGATGCTGGCATTGCTGCTTTGTTTGGGCTGGAGTGCTTCTGCTGGTTTTGTGTTGGTGAGATTGCAGGAAGGGGATTCACTATCACCGGTTACCATGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0012505 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0022804 GO:0022857 GO:0022884 GO:0031204 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Plug_translocon SecY

Protein Analysis

125

Amino Acids

14.24

Weight (kDa)

8.99

Isoelectric Point (pI)

50.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_G	PF04718	18 - 124	2.6e-22	Mitochondrial ATP synthase g subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78720 AT1G78720 AT1G78720
fragaria_vesca	FvH4_1g11090
malus_domestica	MD10G1274900.v1.1
prunus_persica	Prupe.4G067500_v2.0.a1
pyrus_communis	pycom10g22950
rosa_chinensis	RchiOBHm_Chr2g0098361 RchiOBHm_Chr5g0011881
rosa_laevigata	RLG00000016794 RLG00000031865
rosa_multiflora	Rmu_co8311821.1_g000001 Rmu_sc0001475.1_g000010 Rmu_sc0042416.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064720 Rroxscaffold_2G00144040
rosa_rugosa	Rorug02G0072500 Rorug04G0459500
rosa_samantha	Rh2AG119600 Rh2BG122700 Rh2CG124300 Rh2DG124400 Rh5AG091000 Rh5DG087200
rosa_wichuraiana	Rw2G009370 Rw5G007950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	189
AciI	CCGC	2 cut(s)	5, 217
AgeI	ACCGGT	1 cut(s)	362
AgsI	TTSAA	2 cut(s)	268, 275
AluBI	AGCT	1 cut(s)	157
AluI	AGCT	1 cut(s)	157
ApeKI	GCWGC	1 cut(s)	290
AsiGI	ACCGGT	1 cut(s)	362
AsuC2I	CCSGG	1 cut(s)	198
AsuHPI	GGTGA	2 cut(s)	344, 352
BbsI	GAAGAC	1 cut(s)	185
BbvI	GCAGC	1 cut(s)	277
BccI	CCATC	1 cut(s)	4
BcnI	CCSGG	1 cut(s)	198
BfaI	CTAG	1 cut(s)	189
BisI	GCNGC	2 cut(s)	6, 291
BlsI	GCNGC	2 cut(s)	7, 292
Bme1390I	CCNGG	1 cut(s)	198
BmiI	GGNNCC	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	198
BmsI	GCATC	2 cut(s)	23, 268
BpiI	GAAGAC	1 cut(s)	185
BpmI	CTGGAG	1 cut(s)	326
BpuMI	CCSGG	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	362
Bse118I	RCCGGY	2 cut(s)	130, 362
Bse3DI	GCAATG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	39
BseMI	GCAATG	1 cut(s)	285
BseMII	CTCAG	1 cut(s)	71
BseXI	GCAGC	1 cut(s)	277
BshTI	ACCGGT	1 cut(s)	362
BsiSI	CCGG	3 cut(s)	131, 197, 363
BspACI	CCGC	2 cut(s)	5, 217
BspCNI	CTCAG	1 cut(s)	70
BspLI	GGNNCC	1 cut(s)	129
BsrDI	GCAATG	1 cut(s)	285
BsrFI	RCCGGY	2 cut(s)	130, 362
BssAI	RCCGGY	2 cut(s)	130, 362
BssECI	CCNNGG	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	39
Bst4CI	ACNGT	1 cut(s)	139
BstC8I	GCNNGC	3 cut(s)	46, 132, 283
BstDEI	CTNAG	1 cut(s)	57
BstEII	GGTNACC	1 cut(s)	365
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 31, 50, 112, 163, 287
BstPI	GGTNACC	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	277
BstV2I	GAAGAC	1 cut(s)	185
BtgZI	GCGATG	1 cut(s)	23
BtsI	GCAGTG	2 cut(s)	157, 212
BtsIMutI	CAGTG	2 cut(s)	157, 212
Cac8I	GCNNGC	3 cut(s)	46, 132, 283
Cfr10I	RCCGGY	2 cut(s)	130, 362
CseI	GACGC	1 cut(s)	14
CspAI	ACCGGT	1 cut(s)	362
CviAII	CATG	2 cut(s)	74, 371
CviJI	RGCY	4 cut(s)	44, 130, 157, 304
CviKI_1	RGCY	4 cut(s)	44, 130, 157, 304
DdeI	CTNAG	1 cut(s)	57
DrdI	GACNNNNNNGTC	1 cut(s)	189
DseDI	GACNNNNNNGTC	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	39
Eco91I	GGTNACC	1 cut(s)	365
EcoO65I	GGTNACC	1 cut(s)	365
EcoT14I	CCWWGG	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	39
FaeI	CATG	2 cut(s)	77, 374
FaiI	YATR	3 cut(s)	75, 234, 372
FatI	CATG	2 cut(s)	73, 370
Fnu4HI	GCNGC	2 cut(s)	6, 291
Fsp4HI	GCNGC	2 cut(s)	6, 291
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	2 cut(s)	6, 291
GsuI	CTGGAG	1 cut(s)	326
HapII	CCGG	3 cut(s)	131, 197, 363
HgaI	GACGC	1 cut(s)	14
Hin1II	CATG	2 cut(s)	77, 374
HinfI	GANTC	2 cut(s)	55, 351
HpaII	CCGG	3 cut(s)	131, 197, 363
HphI	GGTGA	2 cut(s)	344, 352
Hpy188I	TCNGA	2 cut(s)	204, 377
Hpy188III	TCNNGA	2 cut(s)	125, 238
HpyAV	CCTTC	3 cut(s)	214, 262, 339
HpyCH4III	ACNGT	1 cut(s)	139
HpyCH4V	TGCA	3 cut(s)	34, 150, 341
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 31, 50, 112, 163, 287
HpyF3I	CTNAG	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	77, 374
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
LmnI	GCTCC	1 cut(s)	127
LpnPI	CCDG	9 cut(s)	110, 144, 210, 241, 245, 267, 290, 304, 327
Lsp1109I	GCAGC	1 cut(s)	277
LweI	GCATC	2 cut(s)	23, 268
MaeI	CTAG	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	365
MboII	GAAGA	3 cut(s)	185, 262, 287
MfeI	CAATTG	1 cut(s)	167
MluCI	AATT	1 cut(s)	167
MlyI	GAGTC	1 cut(s)	49
MmeI	TCCRAC	1 cut(s)	182
MroNI	GCCGGC	1 cut(s)	130
MspI	CCGG	3 cut(s)	131, 197, 363
MspR9I	CCNGG	1 cut(s)	198
MunI	CAATTG	1 cut(s)	167
MwoI	GCNNNNNNNGC	6 cut(s)	11, 31, 50, 112, 163, 287
NaeI	GCCGGC	1 cut(s)	132
NciI	CCSGG	1 cut(s)	198
NgoMIV	GCCGGC	1 cut(s)	130
NlaIII	CATG	2 cut(s)	77, 374
NlaIV	GGNNCC	1 cut(s)	129
PdiI	GCCGGC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	351
PinAI	ACCGGT	1 cut(s)	362
PkrI	GCNGC	2 cut(s)	7, 292
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PspEI	GGTNACC	1 cut(s)	365
PspN4I	GGNNCC	1 cut(s)	129
PsrI	GAACNNNNNNTAC	2 cut(s)	101, 133
SatI	GCNGC	2 cut(s)	6, 291
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	198
SetI	ASST	3 cut(s)	86, 159, 273
SfaNI	GCATC	2 cut(s)	23, 268
Sse9I	AATT	1 cut(s)	167
SsiI	CCGC	2 cut(s)	5, 217
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	196
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	1 cut(s)	139
TaqI	TCGA	1 cut(s)	181
TasI	AATT	1 cut(s)	167
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	351
TscAI	CASTG	2 cut(s)	157, 219
TseI	GCWGC	1 cut(s)	290
TspDTI	ATGAA	1 cut(s)	222
TspRI	CASTG	2 cut(s)	157, 219
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.