Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006517

Physical Location & Seq

Genomic Coordinates Forward (+)

61189572 .. 61191852

Gene Structure 2281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0459500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCTAAGGCCTACTCGACTCCAGTTTACAATTTTGACCGATGACTCCATAACTTGTACTACTAGTCCTCTCTTCTCTCTTCTCTCTTCTCTTTCAGAGACTCCAAGAGAAGAGATGGGTCAAGTTCAAAGCGAGGCGGCGGCAGCAGCAGCAGCAAATGTGGATCGACAGGGCCACGGCGTCTCCTCTGCTGCTTCCATCGACTCTCTCATTTCCGAAGCTGCATCATATGGCAATGATGGGAATGAGTCTCTTGATTTCAAGGCTCAGAAGGCCCTGGAGTGCCCTTGCATAGCCGACTTACAAAAGGGCCCTTGTGGGCTTCAGTTTTCAGAGGCTTTTGTTTGTTATCTGAAGAGTACTGTGGAAGAGAAGGGATCAGACTGTGTGCATCCGTTTGTAATTTTGCAGAATTGTATTAAAGCTCATCCAGATGCCTTTTCTAACAACATTTCAGAAGAAGATGGAGTTAAGAAAGAGGAAAAGCTGACCCAGGATTACAAAATTATCCCACCCTCGTGGTCCAAAGAATCCCCCAGTCCAAAATCCAAGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0012505 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0022804 GO:0022857 GO:0022884 GO:0031204 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Plug_translocon SecY

Protein Analysis

185

Amino Acids

19.98

Weight (kDa)

4.81

Isoelectric Point (pI)

51.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78720 AT1G78720 AT1G78720
fragaria_vesca	FvH4_1g11090
malus_domestica	MD10G1274900.v1.1
prunus_persica	Prupe.4G067500_v2.0.a1
pyrus_communis	pycom10g22950
rosa_chinensis	RchiOBHm_Chr2g0098361 RchiOBHm_Chr5g0011881
rosa_laevigata	RLG00000016794 RLG00000031865
rosa_multiflora	Rmu_co8311821.1_g000001 Rmu_sc0001475.1_g000010 Rmu_sc0042416.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064720 Rroxscaffold_2G00144040
rosa_rugosa	Rorug02G0072500 Rorug04G0459500
rosa_samantha	Rh2AG119600 Rh2BG122700 Rh2CG124300 Rh2DG124400 Rh5AG091000 Rh5DG087200
rosa_wichuraiana	Rw2G009370 Rw5G007950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	137, 140
AclWI	GGATC	2 cut(s)	171, 385
AcuI	CTGAAG	2 cut(s)	308, 374
AcyI	GRCGYC	1 cut(s)	180
AfaI	GTAC	2 cut(s)	58, 361
AgsI	TTSAA	2 cut(s)	128, 262
AhlI	ACTAGT	1 cut(s)	62
AjnI	CCWGG	2 cut(s)	276, 492
AleI	CACNNNNGTG	1 cut(s)	517
AluBI	AGCT	4 cut(s)	221, 425, 487, 553
AluI	AGCT	4 cut(s)	221, 425, 487, 553
Alw26I	GTCTC	3 cut(s)	92, 187, 255
AlwI	GGATC	2 cut(s)	171, 385
AoxI	GGCC	4 cut(s)	8, 172, 273, 310
ApaI	GGGCCC	1 cut(s)	314
ApeKI	GCWGC	6 cut(s)	143, 146, 149, 152, 191, 221
AspS9I	GGNCC	5 cut(s)	172, 274, 310, 311, 522
AvaII	GGWCC	1 cut(s)	522
BaeGI	GKGCMC	2 cut(s)	287, 314
BanII	GRGCYC	1 cut(s)	314
BauI	CACGAG	1 cut(s)	517
BbvI	GCAGC	6 cut(s)	155, 158, 161, 164, 178, 208
BccI	CCATC	4 cut(s)	109, 206, 233, 458
BceAI	ACGGC	1 cut(s)	193
BciT130I	CCWGG	2 cut(s)	278, 494
BcoDI	GTCTC	3 cut(s)	92, 187, 255
BcuI	ACTAGT	1 cut(s)	62
BfaI	CTAG	1 cut(s)	63
BfmI	CTRYAG	1 cut(s)	554
BisI	GCNGC	8 cut(s)	138, 141, 144, 147, 150, 153, 192, 222
BlsI	GCNGC	8 cut(s)	139, 142, 145, 148, 151, 154, 193, 223
BmcAI	AGTACT	1 cut(s)	361
Bme1390I	CCNGG	2 cut(s)	278, 494
Bme18I	GGWCC	1 cut(s)	522
BmgT120I	GGNCC	5 cut(s)	172, 274, 310, 311, 522
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	2 cut(s)	278, 494
BmrI	ACTGGG	1 cut(s)	531
BmsI	GCATC	3 cut(s)	233, 400, 424
BmuI	ACTGGG	1 cut(s)	531
BpmI	CTGGAG	2 cut(s)	5, 299
Bpu10I	CCTNAGC	1 cut(s)	5
BsaHI	GRCGYC	1 cut(s)	180
BsaJI	CCNNGG	3 cut(s)	175, 276, 492
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bse1I	ACTGG	2 cut(s)	22, 537
Bse3DI	GCAATG	1 cut(s)	241
BseBI	CCWGG	2 cut(s)	278, 494
BseDI	CCNNGG	3 cut(s)	175, 276, 492
BseGI	GGATG	2 cut(s)	391, 427
BseMI	GCAATG	1 cut(s)	241
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	2 cut(s)	22, 537
BseRI	GAGGAG	1 cut(s)	175
BseSI	GKGCMC	2 cut(s)	287, 314
BseXI	GCAGC	6 cut(s)	155, 158, 161, 164, 178, 208
BshFI	GGCC	4 cut(s)	10, 174, 275, 312
BsmAI	GTCTC	3 cut(s)	92, 187, 255
BsmBI	CGTCTC	1 cut(s)	187
BsnI	GGCC	4 cut(s)	10, 174, 275, 312
Bsp120I	GGGCCC	1 cut(s)	310
Bsp1286I	GDGCHC	2 cut(s)	287, 314
Bsp143I	GATC	2 cut(s)	163, 377
BspACI	CCGC	2 cut(s)	137, 140
BspANI	GGCC	4 cut(s)	10, 174, 275, 312
BspCNI	CTCAG	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	2 cut(s)	171, 385
BsrDI	GCAATG	1 cut(s)	241
BsrI	ACTGG	2 cut(s)	22, 537
BssECI	CCNNGG	3 cut(s)	175, 276, 492
BssMI	GATC	2 cut(s)	163, 377
BssNI	GRCGYC	1 cut(s)	180
BssSI	CACGAG	1 cut(s)	517
Bst2BI	CACGAG	1 cut(s)	517
Bst2UI	CCWGG	2 cut(s)	278, 494
Bst4CI	ACNGT	2 cut(s)	364, 386
Bst6I	CTCTTC	6 cut(s)	77, 84, 91, 105, 350, 363
BstACI	GRCGYC	1 cut(s)	180
BstDEI	CTNAG	2 cut(s)	5, 267
BstDSI	CCRYGG	1 cut(s)	175
BstF5I	GGATG	2 cut(s)	391, 427
BstKTI	GATC	2 cut(s)	166, 380
BstMAI	GTCTC	3 cut(s)	92, 187, 255
BstMBI	GATC	2 cut(s)	163, 377
BstMWI	GCNNNNNNNGC	5 cut(s)	143, 146, 149, 152, 272
BstNI	CCWGG	2 cut(s)	278, 494
BstSCI	CCNGG	2 cut(s)	276, 492
BstSFI	CTRYAG	1 cut(s)	554
BstSLI	GKGCMC	2 cut(s)	287, 314
BstV1I	GCAGC	6 cut(s)	155, 158, 161, 164, 178, 208
BstXI	CCANNNNNNTGG	1 cut(s)	519
BsuRI	GGCC	4 cut(s)	10, 174, 275, 312
BtgI	CCRYGG	1 cut(s)	175
BtsCI	GGATG	2 cut(s)	391, 427
Cfr13I	GGNCC	5 cut(s)	172, 274, 310, 311, 522
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	2 cut(s)	57, 360
CviQI	GTAC	2 cut(s)	57, 360
DdeI	CTNAG	2 cut(s)	5, 267
DpnI	GATC	2 cut(s)	165, 379
DpnII	GATC	2 cut(s)	163, 377
Eam1104I	CTCTTC	6 cut(s)	77, 84, 91, 105, 350, 363
EarI	CTCTTC	6 cut(s)	77, 84, 91, 105, 350, 363
Eco147I	AGGCCT	1 cut(s)	10
Eco24I	GRGCYC	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	522
Eco57I	CTGAAG	2 cut(s)	308, 374
EcoO109I	RGGNCCY	3 cut(s)	274, 310, 311
EcoRII	CCWGG	2 cut(s)	276, 492
EcoT38I	GRGCYC	1 cut(s)	314
Esp3I	CGTCTC	1 cut(s)	187
FaiI	YATR	4 cut(s)	50, 229, 231, 293
FauNDI	CATATG	1 cut(s)	229
Fnu4HI	GCNGC	8 cut(s)	138, 141, 144, 147, 150, 153, 192, 222
FokI	GGATG	2 cut(s)	378, 414
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	8 cut(s)	138, 141, 144, 147, 150, 153, 192, 222
FspBI	CTAG	1 cut(s)	63
GluI	GCNGC	8 cut(s)	138, 141, 144, 147, 150, 153, 192, 222
GsuI	CTGGAG	2 cut(s)	5, 299
HaeIII	GGCC	4 cut(s)	10, 174, 275, 312
HgaI	GACGC	1 cut(s)	169
Hin1I	GRCGYC	1 cut(s)	180
HinfI	GANTC	6 cut(s)	18, 44, 100, 203, 248, 530
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	7 cut(s)	97, 217, 270, 334, 354, 382, 457
Hpy188III	TCNNGA	2 cut(s)	254, 431
Hpy8I	GTNNAC	1 cut(s)	27
HpyAV	CCTTC	2 cut(s)	265, 367
HpyCH4III	ACNGT	2 cut(s)	364, 386
HpyCH4V	TGCA	4 cut(s)	224, 291, 391, 409
HpyF10VI	GCNNNNNNNGC	5 cut(s)	143, 146, 149, 152, 272
HpyF3I	CTNAG	2 cut(s)	5, 267
Hsp92I	GRCGYC	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	163, 377
LpnPI	CCDG	8 cut(s)	35, 155, 263, 290, 444, 479, 506, 550
Lsp1109I	GCAGC	6 cut(s)	155, 158, 161, 164, 178, 208
LweI	GCATC	3 cut(s)	233, 400, 424
MaeI	CTAG	1 cut(s)	63
MalI	GATC	2 cut(s)	165, 379
MboI	GATC	2 cut(s)	163, 377
MboII	GAAGA	8 cut(s)	64, 71, 78, 122, 367, 380, 470, 473
MhlI	GDGCHC	2 cut(s)	287, 314
MluCI	AATT	4 cut(s)	30, 402, 412, 504
MlyI	GAGTC	5 cut(s)	12, 38, 94, 197, 257
MnlI	CCTC	6 cut(s)	78, 127, 196, 328, 472, 526
MseI	TTAA	2 cut(s)	420, 471
MslI	CAYNNNNRTG	2 cut(s)	432, 517
MspR9I	CCNGG	2 cut(s)	278, 494
MvaI	CCWGG	2 cut(s)	278, 494
MwoI	GCNNNNNNNGC	5 cut(s)	143, 146, 149, 152, 272
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	2 cut(s)	163, 377
NlaIV	GGNNCC	1 cut(s)	312
OliI	CACNNNNGTG	1 cut(s)	517
PceI	AGGCCT	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	530
PkrI	GCNGC	8 cut(s)	139, 142, 145, 148, 151, 154, 193, 223
PleI	GAGTC	5 cut(s)	12, 38, 94, 197, 256
PpsI	GAGTC	5 cut(s)	12, 38, 94, 197, 256
Psp6I	CCWGG	2 cut(s)	276, 492
PspGI	CCWGG	2 cut(s)	276, 492
PspN4I	GGNNCC	1 cut(s)	312
PspOMI	GGGCCC	1 cut(s)	310
PspPI	GGNCC	5 cut(s)	172, 274, 310, 311, 522
RsaI	GTAC	2 cut(s)	58, 361
RsaNI	GTAC	2 cut(s)	57, 360
RseI	CAYNNNNRTG	2 cut(s)	432, 517
SaqAI	TTAA	2 cut(s)	420, 471
SatI	GCNGC	8 cut(s)	138, 141, 144, 147, 150, 153, 192, 222
Sau3AI	GATC	2 cut(s)	163, 377
Sau96I	GGNCC	5 cut(s)	172, 274, 310, 311, 522
ScaI	AGTACT	1 cut(s)	361
SchI	GAGTC	5 cut(s)	12, 38, 94, 197, 257
ScrFI	CCNGG	2 cut(s)	278, 494
SduI	GDGCHC	2 cut(s)	287, 314
SetI	ASST	4 cut(s)	223, 427, 489, 555
SfaNI	GCATC	3 cut(s)	233, 400, 424
SfcI	CTRYAG	1 cut(s)	554
SinI	GGWCC	1 cut(s)	522
SmiMI	CAYNNNNRTG	2 cut(s)	432, 517
SpeI	ACTAGT	1 cut(s)	62
Sse9I	AATT	4 cut(s)	30, 402, 412, 504
SseBI	AGGCCT	1 cut(s)	10
SsiI	CCGC	2 cut(s)	137, 140
SspMI	CTAG	1 cut(s)	63
StuI	AGGCCT	1 cut(s)	10
StyD4I	CCNGG	2 cut(s)	276, 492
TaaI	ACNGT	2 cut(s)	364, 386
TaqI	TCGA	3 cut(s)	16, 166, 201
TaqII	GACCGA	1 cut(s)	53
TasI	AATT	4 cut(s)	30, 402, 412, 504
TatI	WGTACW	2 cut(s)	56, 359
TauI	GCSGC	2 cut(s)	140, 143
TfiI	GAWTC	1 cut(s)	530
Tru1I	TTAA	2 cut(s)	420, 471
Tru9I	TTAA	2 cut(s)	420, 471
TseI	GCWGC	6 cut(s)	143, 146, 149, 152, 191, 221
TspGWI	ACGGA	1 cut(s)	384
VpaK11BI	GGWCC	1 cut(s)	522
XspI	CTAG	1 cut(s)	63
ZrmI	AGTACT	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.