Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006517

Physical Location & Seq

Genomic Coordinates Reverse (-)

7916060 .. 7917268

Gene Structure 1209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29249

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCCAATCATTCTTCAATCTGCTCTTGTCTTCAATGTTTCCTTTATCTCCCAGTTGCTTTACAAGAGTTACGGTGGGAATTTCGTGGTGAACTTGTTGGGGAAGTGGAAGGAGTCTGGACATTCTAGTGGCCAGTTTATTCCAGTTGGTGGTCTTGCTTACTATGTCACTCCACCAGCAAGCTTGGCAAATATGGCAGCCGATCCATTCCATGCTCTATTGTACCTAGTGTTTATGCTTGCAGCCTGTGCATTATTGTCAAAAACTTGGATTCAAGTTTCTGGTTCTTCCGCCCGAGATGTAGCTAAACAGCTCAAGGACCAAAACATGGCGATGCCTGGACATAGAGAATCAAACTTGGAAAAGGAACTTAATCGCTATATACCAACTGCAGCTGCATTTGGAGGAATGTGCATTGGTGCCCTGACTGTTTTAGCGGATTTCATGGGAGCAATTGGCTCAGGAACTGGGATTTTGCTTGCGGTATATCAGTACTTTGAGACATATGAAAAAGAGCGTGGCAGTGAGCTCGGCCTTTTCGGCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0012505 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0022804 GO:0022857 GO:0022884 GO:0031204 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Plug_translocon SecY

Protein Analysis

182

Amino Acids

19.63

Weight (kDa)

6.82

Isoelectric Point (pI)

28.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SecY	PF00344	1 - 169	1.6e-26	SecY

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78720 AT1G78720 AT1G78720
fragaria_vesca	FvH4_1g11090
malus_domestica	MD10G1274900.v1.1
prunus_persica	Prupe.4G067500_v2.0.a1
pyrus_communis	pycom10g22950
rosa_chinensis	RchiOBHm_Chr2g0098361 RchiOBHm_Chr5g0011881
rosa_laevigata	RLG00000016794 RLG00000031865
rosa_multiflora	Rmu_co8311821.1_g000001 Rmu_sc0001475.1_g000010 Rmu_sc0042416.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064720 Rroxscaffold_2G00144040
rosa_rugosa	Rorug02G0072500 Rorug04G0459500
rosa_samantha	Rh2AG119600 Rh2BG122700 Rh2CG124300 Rh2DG124400 Rh5AG091000 Rh5DG087200
rosa_wichuraiana	Rw2G009370 Rw5G007950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	419
AccB7I	CCANNNNNTGG	2 cut(s)	149, 328
AciI	CCGC	3 cut(s)	291, 437, 482
AclWI	GGATC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	79
AfaI	GTAC	2 cut(s)	224, 494
AfiI	CCNNNNNNNGG	2 cut(s)	149, 328
AgsI	TTSAA	3 cut(s)	17, 34, 275
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	5 cut(s)	183, 305, 313, 395, 529
AluI	AGCT	5 cut(s)	183, 305, 313, 395, 529
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	1 cut(s)	494
AlwI	GGATC	1 cut(s)	197
AlwNI	CAGNNNCTG	1 cut(s)	467
Ama87I	CYCGRG	1 cut(s)	294
AoxI	GGCC	3 cut(s)	130, 532, 541
ApeKI	GCWGC	4 cut(s)	197, 242, 392, 395
ApoI	RAATTY	1 cut(s)	79
AspS9I	GGNCC	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	100
AvaI	CYCGRG	1 cut(s)	294
AvaII	GGWCC	1 cut(s)	319
BaeGI	GKGCMC	1 cut(s)	424
BalI	TGGCCA	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	419
BanII	GRGCYC	1 cut(s)	531
BbsI	GAAGAC	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	4 cut(s)	209, 254, 382, 404
BcgI	CGANNNNNNTGC	2 cut(s)	511, 545
BciT130I	CCWGG	1 cut(s)	339
BcoDI	GTCTC	1 cut(s)	494
BfaI	CTAG	2 cut(s)	126, 227
BfmI	CTRYAG	1 cut(s)	390
BglI	GCCNNNNNGGC	1 cut(s)	540
BisI	GCNGC	4 cut(s)	198, 243, 393, 396
BlsI	GCNGC	4 cut(s)	199, 244, 394, 397
BmcAI	AGTACT	1 cut(s)	494
Bme1390I	CCNGG	1 cut(s)	339
Bme18I	GGWCC	1 cut(s)	319
BmeT110I	CYCGRG	1 cut(s)	294
BmgT120I	GGNCC	1 cut(s)	319
BmiI	GGNNCC	1 cut(s)	421
BmrFI	CCNGG	1 cut(s)	339
BmrI	ACTGGG	2 cut(s)	46, 477
BmsI	GCATC	1 cut(s)	324
BmuI	ACTGGG	2 cut(s)	46, 477
BpiI	GAAGAC	1 cut(s)	22
Bpu10I	CCTNAGC	1 cut(s)	460
BpuEI	CTTGAG	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 328
Bse1I	ACTGG	4 cut(s)	52, 133, 143, 472
BseBI	CCWGG	1 cut(s)	339
BseLI	CCNNNNNNNGG	2 cut(s)	149, 328
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	4 cut(s)	52, 133, 143, 472
BseSI	GKGCMC	1 cut(s)	424
BseXI	GCAGC	4 cut(s)	209, 254, 382, 404
BshFI	GGCC	3 cut(s)	132, 534, 543
BshNI	GGYRCC	1 cut(s)	419
BsiHKAI	GWGCWC	1 cut(s)	531
BsiHKCI	CYCGRG	1 cut(s)	294
BslI	CCNNNNNNNGG	2 cut(s)	149, 328
BsmAI	GTCTC	1 cut(s)	494
BsnI	GGCC	3 cut(s)	132, 534, 543
BsoBI	CYCGRG	1 cut(s)	294
Bsp1286I	GDGCHC	2 cut(s)	424, 531
Bsp143I	GATC	1 cut(s)	202
BspACI	CCGC	3 cut(s)	291, 437, 482
BspANI	GGCC	3 cut(s)	132, 534, 543
BspCNI	CTCAG	1 cut(s)	473
BspLI	GGNNCC	1 cut(s)	421
BspMAI	CTGCAG	1 cut(s)	394
BspPI	GGATC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	419
BsrI	ACTGG	4 cut(s)	52, 133, 143, 472
BssMI	GATC	1 cut(s)	202
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	2 cut(s)	74, 430
BstAPI	GCANNNNNTGC	1 cut(s)	248
BstC8I	GCNNGC	3 cut(s)	181, 240, 480
BstDEI	CTNAG	1 cut(s)	460
BstKTI	GATC	1 cut(s)	205
BstMAI	GTCTC	1 cut(s)	494
BstMBI	GATC	1 cut(s)	202
BstMWI	GCNNNNNNNGC	4 cut(s)	185, 194, 248, 540
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	390
BstSLI	GKGCMC	1 cut(s)	424
BstV1I	GCAGC	4 cut(s)	209, 254, 382, 404
BstV2I	GAAGAC	1 cut(s)	22
BsuRI	GGCC	3 cut(s)	132, 534, 543
BtgZI	GCGATG	1 cut(s)	347
BtsI	GCAGTG	1 cut(s)	529
BtsIMutI	CAGTG	1 cut(s)	529
Cac8I	GCNNGC	3 cut(s)	181, 240, 480
CaiI	CAGNNNCTG	1 cut(s)	467
Cfr13I	GGNCC	1 cut(s)	319
Csp6I	GTAC	2 cut(s)	223, 493
CviAII	CATG	3 cut(s)	212, 328, 445
CviQI	GTAC	2 cut(s)	223, 493
DdeI	CTNAG	1 cut(s)	460
DpnI	GATC	1 cut(s)	204
DpnII	GATC	1 cut(s)	202
EaeI	YGGCCR	1 cut(s)	130
EciI	GGCGGA	1 cut(s)	280
Ecl136II	GAGCTC	1 cut(s)	529
Eco24I	GRGCYC	1 cut(s)	531
Eco47I	GGWCC	1 cut(s)	319
Eco53kI	GAGCTC	1 cut(s)	529
Eco88I	CYCGRG	1 cut(s)	294
EcoICRI	GAGCTC	1 cut(s)	529
EcoRII	CCWGG	1 cut(s)	337
EcoT38I	GRGCYC	1 cut(s)	531
FaeI	CATG	3 cut(s)	215, 331, 448
FatI	CATG	3 cut(s)	211, 327, 444
FauNDI	CATATG	1 cut(s)	505
Fnu4HI	GCNGC	4 cut(s)	198, 243, 393, 396
FriOI	GRGCYC	1 cut(s)	531
Fsp4HI	GCNGC	4 cut(s)	198, 243, 393, 396
FspBI	CTAG	2 cut(s)	126, 227
GluI	GCNGC	4 cut(s)	198, 243, 393, 396
HaeIII	GGCC	3 cut(s)	132, 534, 543
Hin1II	CATG	3 cut(s)	215, 331, 448
HindIII	AAGCTT	1 cut(s)	181
HinfI	GANTC	3 cut(s)	113, 271, 350
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188III	TCNNGA	2 cut(s)	117, 462
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	1 cut(s)	103
HpyCH4III	ACNGT	2 cut(s)	74, 430
HpyCH4V	TGCA	5 cut(s)	242, 251, 392, 398, 414
HpyF10VI	GCNNNNNNNGC	4 cut(s)	185, 194, 248, 540
HpyF3I	CTNAG	1 cut(s)	460
Hsp92II	CATG	3 cut(s)	215, 331, 448
Kzo9I	GATC	1 cut(s)	202
LmnI	GCTCC	1 cut(s)	449
Lsp1109I	GCAGC	4 cut(s)	209, 254, 382, 404
LweI	GCATC	1 cut(s)	324
MaeI	CTAG	2 cut(s)	126, 227
MaeIII	GTNAC	2 cut(s)	68, 166
MalI	GATC	1 cut(s)	204
MboI	GATC	1 cut(s)	202
MboII	GAAGA	3 cut(s)	5, 22, 279
MfeI	CAATTG	1 cut(s)	453
MhlI	GDGCHC	2 cut(s)	424, 531
MlsI	TGGCCA	1 cut(s)	132
MluCI	AATT	2 cut(s)	79, 453
MluNI	TGGCCA	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	1 cut(s)	398
Mox20I	TGGCCA	1 cut(s)	132
MscI	TGGCCA	1 cut(s)	132
MseI	TTAA	2 cut(s)	372, 547
MslI	CAYNNNNRTG	2 cut(s)	126, 332
Msp20I	TGGCCA	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	395
MspR9I	CCNGG	1 cut(s)	339
MunI	CAATTG	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	4 cut(s)	185, 194, 248, 540
NdeI	CATATG	1 cut(s)	505
NdeII	GATC	1 cut(s)	202
NlaIII	CATG	3 cut(s)	215, 331, 448
NlaIV	GGNNCC	1 cut(s)	421
NmeAIII	GCCGAG	1 cut(s)	510
NmuCI	GTSAC	1 cut(s)	166
PfeI	GAWTC	2 cut(s)	271, 350
PflMI	CCANNNNNTGG	2 cut(s)	149, 328
PkrI	GCNGC	4 cut(s)	199, 244, 394, 397
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
Psp124BI	GAGCTC	1 cut(s)	531
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	421
PspPI	GGNCC	1 cut(s)	319
PstI	CTGCAG	1 cut(s)	394
PstNI	CAGNNNCTG	1 cut(s)	467
PvuII	CAGCTG	1 cut(s)	395
RsaI	GTAC	2 cut(s)	224, 494
RsaNI	GTAC	2 cut(s)	223, 493
RseI	CAYNNNNRTG	2 cut(s)	126, 332
SacI	GAGCTC	1 cut(s)	531
SaqAI	TTAA	2 cut(s)	372, 547
SatI	GCNGC	4 cut(s)	198, 243, 393, 396
Sau3AI	GATC	1 cut(s)	202
Sau96I	GGNCC	1 cut(s)	319
ScaI	AGTACT	1 cut(s)	494
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	2 cut(s)	424, 531
SetI	ASST	6 cut(s)	185, 228, 307, 315, 397, 531
SfaNI	GCATC	1 cut(s)	324
SfcI	CTRYAG	1 cut(s)	390
SfiI	GGCCNNNNNGGCC	1 cut(s)	540
SinI	GGWCC	1 cut(s)	319
SmiMI	CAYNNNNRTG	2 cut(s)	126, 332
SmlI	CTYRAG	1 cut(s)	314
SmoI	CTYRAG	1 cut(s)	314
Sse9I	AATT	2 cut(s)	79, 453
SsiI	CCGC	3 cut(s)	291, 437, 482
SspMI	CTAG	2 cut(s)	126, 227
SstI	GAGCTC	1 cut(s)	531
StyD4I	CCNGG	1 cut(s)	337
TaaI	ACNGT	2 cut(s)	74, 430
TasI	AATT	2 cut(s)	79, 453
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	2 cut(s)	271, 350
Tru1I	TTAA	2 cut(s)	372, 547
Tru9I	TTAA	2 cut(s)	372, 547
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	4 cut(s)	197, 242, 392, 395
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	2 cut(s)	433, 522
TspRI	CASTG	1 cut(s)	529
Van91I	CCANNNNNTGG	2 cut(s)	149, 328
VpaK11BI	GGWCC	1 cut(s)	319
XapI	RAATTY	1 cut(s)	79
XspI	CTAG	2 cut(s)	126, 227
ZrmI	AGTACT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.