Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8311821.1

Orthogroup ID

OG0006517

Physical Location & Seq

Genomic Coordinates Forward (+)

9 .. 917

Gene Structure 909 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8311821.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atgtgcttagatgagcttttccaaaagggatatggtctcgtgtcatctgcgagctcccttttcgtcactgccaacatctgcgaaaacatcatttggaaggcttttgaccccgcaactgtaaacagcggcagcgggggagctcatgagtttaaaggtgcacttgttgctttgttccatctcataatatccaggacagacaagatcagtgctattcgagaggctttctttcgagataacctaccaaacgtgacaaacctacttgccactatcttcatctttctaattgttgtctacttgcaatgctttcatgtggctttgaaagtgagatcaaagggagcagcgtcatcatatcctattaagctcttctatacttctaacatgcccatcattctccaatctgctcttgtctcgaatctttgttttgtatctcattttcttcacaagaggtacaatgggaataataatttcttggtgaatctcatggggaagtggaaggaatctggccagctcaatattctcattggtggtctagcttactatgtcactgcaccagcaagcttggcagatatggcagccgatcccatgcacgcaatgttttatctagtctttatgcttgcaacatgtgcattgctatcgaaaacttggatccgattctctggttcttctgcgagagacgtagcaaagcaactcaaggaacaaaacatggggattcatggacataaagactcgagcctagagaagaagcttaatcgcaatatacctattgcggctgctcttggaggaatgtgcattggtgccttgactgttgtggcagatctcatgggagcaatgggatcaggagctgggattttgcttgctgttacaatcatatatcagtgttgggagacatatgaggagaaagagtgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0012505 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0022804 GO:0022857 GO:0022884 GO:0031204 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Plug_translocon SecY

Protein Analysis

302

Amino Acids

33.03

Weight (kDa)

8.71

Isoelectric Point (pI)

33.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78720 AT1G78720 AT1G78720
fragaria_vesca	FvH4_1g11090
malus_domestica	MD10G1274900.v1.1
prunus_persica	Prupe.4G067500_v2.0.a1
pyrus_communis	pycom10g22950
rosa_chinensis	RchiOBHm_Chr2g0098361 RchiOBHm_Chr5g0011881
rosa_laevigata	RLG00000016794 RLG00000031865
rosa_multiflora	Rmu_co8311821.1_g000001 Rmu_sc0001475.1_g000010 Rmu_sc0042416.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064720 Rroxscaffold_2G00144040
rosa_rugosa	Rorug02G0072500 Rorug04G0459500
rosa_samantha	Rh2AG119600 Rh2BG122700 Rh2CG124300 Rh2DG124400 Rh5AG091000 Rh5DG087200
rosa_wichuraiana	Rw2G009370 Rw5G007950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	794
AccI	GTMKAC	1 cut(s)	291
AciI	CCGC	4 cut(s)	111, 126, 132, 767
AclWI	GGATC	4 cut(s)	572, 640, 653, 841
AcoI	YGGCCR	1 cut(s)	502
AfaI	GTAC	1 cut(s)	449
AflIII	ACRYGT	1 cut(s)	620
AgsI	TTSAA	1 cut(s)	319
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	9 cut(s)	16, 54, 140, 361, 508, 533, 558, 745, 842
AluI	AGCT	9 cut(s)	16, 54, 140, 361, 508, 533, 558, 745, 842
Alw21I	GWGCWC	3 cut(s)	56, 142, 160
Alw26I	GTCTC	4 cut(s)	41, 412, 666, 878
Alw44I	GTGCAC	1 cut(s)	156
AlwI	GGATC	4 cut(s)	572, 640, 653, 841
AlwNI	CAGNNNCTG	1 cut(s)	842
Ama87I	CYCGRG	1 cut(s)	727
AoxI	GGCC	1 cut(s)	502
ApaLI	GTGCAC	1 cut(s)	156
ApeKI	GCWGC	4 cut(s)	129, 338, 572, 770
AsuHPI	GGTGA	1 cut(s)	484
AvaI	CYCGRG	1 cut(s)	727
BaeGI	GKGCMC	1 cut(s)	160
BalI	TGGCCA	1 cut(s)	504
BamHI	GGATCC	1 cut(s)	645
BanI	GGYRCC	1 cut(s)	794
BanII	GRGCYC	2 cut(s)	56, 142
BauI	CACGAG	1 cut(s)	38
Bbv12I	GWGCWC	3 cut(s)	56, 142, 160
BbvI	GCAGC	4 cut(s)	141, 350, 584, 757
BccI	CCATC	2 cut(s)	183, 392
BcgI	CGANNNNNNTGC	2 cut(s)	615, 649
BciT130I	CCWGG	1 cut(s)	190
BcoDI	GTCTC	4 cut(s)	41, 412, 666, 878
BfaI	CTAG	4 cut(s)	530, 602, 734, 907
BglII	AGATCT	1 cut(s)	814
BisI	GCNGC	6 cut(s)	127, 130, 339, 573, 768, 771
BlsI	GCNGC	6 cut(s)	128, 131, 340, 574, 769, 772
Bme1390I	CCNGG	1 cut(s)	190
BmeT110I	CYCGRG	1 cut(s)	727
BmiI	GGNNCC	2 cut(s)	647, 796
BmrFI	CCNGG	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	674
BsaI	GGTCTC	1 cut(s)	41
BsaXI	ACNNNNNCTCC	1 cut(s)	887
Bse3DI	GCAATG	4 cut(s)	305, 597, 626, 834
BseBI	CCWGG	1 cut(s)	190
BseMI	GCAATG	4 cut(s)	305, 597, 626, 834
BseRI	GAGGAG	1 cut(s)	908
BseSI	GKGCMC	1 cut(s)	160
BseXI	GCAGC	4 cut(s)	141, 350, 584, 757
BseYI	CCCAGC	1 cut(s)	842
BsgI	GTGCAG	1 cut(s)	531
BshFI	GGCC	1 cut(s)	504
BshNI	GGYRCC	1 cut(s)	794
BsiHKAI	GWGCWC	3 cut(s)	56, 142, 160
BsiHKCI	CYCGRG	1 cut(s)	727
BsmAI	GTCTC	4 cut(s)	41, 412, 666, 878
BsmBI	CGTCTC	1 cut(s)	666
BsnI	GGCC	1 cut(s)	504
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	727
Bsp1286I	GDGCHC	3 cut(s)	56, 142, 160
Bsp143I	GATC	6 cut(s)	201, 326, 577, 645, 814, 833
BspACI	CCGC	4 cut(s)	111, 126, 132, 767
BspANI	GGCC	1 cut(s)	504
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	647, 796
BspPI	GGATC	4 cut(s)	572, 640, 653, 841
BspQI	GCTCTTC	1 cut(s)	368
BspT107I	GGYRCC	1 cut(s)	794
BspTNI	GGTCTC	1 cut(s)	41
BsrDI	GCAATG	4 cut(s)	305, 597, 626, 834
BssMI	GATC	6 cut(s)	201, 326, 577, 645, 814, 833
BssSI	CACGAG	1 cut(s)	38
Bst2BI	CACGAG	1 cut(s)	38
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	118, 805
Bst6I	CTCTTC	1 cut(s)	368
BstAPI	GCANNNNNTGC	2 cut(s)	164, 623
BstC8I	GCNNGC	6 cut(s)	52, 506, 556, 588, 615, 855
BstDEI	CTNAG	1 cut(s)	7
BstKTI	GATC	6 cut(s)	204, 329, 580, 648, 817, 836
BstMAI	GTCTC	4 cut(s)	41, 412, 666, 878
BstMBI	GATC	6 cut(s)	201, 326, 577, 645, 814, 833
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 560, 569, 623
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	2 cut(s)	382, 624
BstSCI	CCNGG	1 cut(s)	188
BstSLI	GKGCMC	1 cut(s)	160
BstV1I	GCAGC	4 cut(s)	141, 350, 584, 757
BstX2I	RGATCY	2 cut(s)	645, 814
BstYI	RGATCY	2 cut(s)	645, 814
BsuRI	GGCC	1 cut(s)	504
BtsI	GCAGTG	2 cut(s)	66, 543
BtsIMutI	CAGTG	4 cut(s)	66, 211, 543, 881
Cac8I	GCNNGC	6 cut(s)	52, 506, 556, 588, 615, 855
CaiI	CAGNNNCTG	1 cut(s)	842
CciI	TCATGA	1 cut(s)	142
CseI	GACGC	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	448
CviAII	CATG	9 cut(s)	143, 308, 379, 481, 583, 621, 703, 713, 820
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	1 cut(s)	7
DpnI	GATC	6 cut(s)	203, 328, 579, 647, 816, 835
DpnII	GATC	6 cut(s)	201, 326, 577, 645, 814, 833
DraI	TTTAAA	1 cut(s)	151
EaeI	YGGCCR	1 cut(s)	502
Eam1104I	CTCTTC	1 cut(s)	368
EarI	CTCTTC	1 cut(s)	368
Ecl136II	GAGCTC	2 cut(s)	54, 140
Eco24I	GRGCYC	2 cut(s)	56, 142
Eco31I	GGTCTC	1 cut(s)	41
Eco53kI	GAGCTC	2 cut(s)	54, 140
Eco88I	CYCGRG	1 cut(s)	727
EcoICRI	GAGCTC	2 cut(s)	54, 140
EcoRII	CCWGG	1 cut(s)	188
EcoT38I	GRGCYC	2 cut(s)	56, 142
Esp3I	CGTCTC	1 cut(s)	666
FaeI	CATG	9 cut(s)	146, 311, 382, 484, 586, 624, 706, 716, 823
FalI	AAGNNNNNCTT	2 cut(s)	144, 176
FatI	CATG	9 cut(s)	142, 307, 378, 480, 582, 620, 702, 712, 819
FauI	CCCGC	2 cut(s)	118, 125
FauNDI	CATATG	1 cut(s)	889
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	6 cut(s)	127, 130, 339, 573, 768, 771
FriOI	GRGCYC	2 cut(s)	56, 142
Fsp4HI	GCNGC	6 cut(s)	127, 130, 339, 573, 768, 771
FspBI	CTAG	4 cut(s)	530, 602, 734, 907
GluI	GCNGC	6 cut(s)	127, 130, 339, 573, 768, 771
GsaI	CCCAGC	1 cut(s)	846
HaeIII	GGCC	1 cut(s)	504
HgaI	GACGC	1 cut(s)	330
Hin1II	CATG	9 cut(s)	146, 311, 382, 484, 586, 624, 706, 716, 823
HindIII	AAGCTT	2 cut(s)	556, 743
HinfI	GANTC	6 cut(s)	412, 475, 497, 651, 709, 725
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	3 cut(s)	121, 158, 292
Hpy188I	TCNGA	1 cut(s)	650
Hpy188III	TCNNGA	5 cut(s)	143, 215, 230, 409, 837
Hpy8I	GTNNAC	3 cut(s)	121, 158, 292
HpyAV	CCTTC	2 cut(s)	91, 487
HpyCH4III	ACNGT	2 cut(s)	118, 805
HpyCH4IV	ACGT	2 cut(s)	246, 675
HpyCH4V	TGCA	7 cut(s)	158, 298, 548, 586, 617, 626, 789
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 560, 569, 623
HpyF3I	CTNAG	1 cut(s)	7
HpySE526I	ACGT	2 cut(s)	246, 675
Hsp92II	CATG	9 cut(s)	146, 311, 382, 484, 586, 624, 706, 716, 823
Kzo9I	GATC	6 cut(s)	201, 326, 577, 645, 814, 833
LguI	GCTCTTC	1 cut(s)	368
LmnI	GCTCC	5 cut(s)	59, 137, 335, 824, 839
LpnPI	CCDG	8 cut(s)	175, 202, 486, 518, 564, 642, 822, 828
Lsp1109I	GCAGC	4 cut(s)	141, 350, 584, 757
MaeI	CTAG	4 cut(s)	530, 602, 734, 907
MaeII	ACGT	2 cut(s)	246, 675
MaeIII	GTNAC	4 cut(s)	64, 247, 541, 859
MalI	GATC	6 cut(s)	203, 328, 579, 647, 816, 835
MboI	GATC	6 cut(s)	201, 326, 577, 645, 814, 833
MboII	GAAGA	5 cut(s)	262, 355, 428, 654, 751
MflI	RGATCY	2 cut(s)	645, 814
MhlI	GDGCHC	3 cut(s)	56, 142, 160
MlsI	TGGCCA	1 cut(s)	504
MluCI	AATT	2 cut(s)	282, 463
MluNI	TGGCCA	1 cut(s)	504
MlyI	GAGTC	1 cut(s)	719
MnlI	CCTC	4 cut(s)	211, 438, 773, 886
Mox20I	TGGCCA	1 cut(s)	504
MscI	TGGCCA	1 cut(s)	504
MseI	TTAA	3 cut(s)	150, 357, 747
Msp20I	TGGCCA	1 cut(s)	504
MspA1I	CMGCKG	2 cut(s)	126, 132
MspR9I	CCNGG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	4 cut(s)	164, 560, 569, 623
NdeI	CATATG	1 cut(s)	889
NdeII	GATC	6 cut(s)	201, 326, 577, 645, 814, 833
NlaIII	CATG	9 cut(s)	146, 311, 382, 484, 586, 624, 706, 716, 823
NlaIV	GGNNCC	2 cut(s)	647, 796
NmuCI	GTSAC	3 cut(s)	64, 247, 541
NspI	RCATGY	2 cut(s)	382, 624
PaeR7I	CTCGAG	1 cut(s)	727
PagI	TCATGA	1 cut(s)	142
PciI	ACATGT	1 cut(s)	620
PciSI	GCTCTTC	1 cut(s)	368
PfeI	GAWTC	5 cut(s)	412, 475, 497, 651, 709
PfoI	TCCNGGA	1 cut(s)	188
PkrI	GCNGC	6 cut(s)	128, 131, 340, 574, 769, 772
PleI	GAGTC	1 cut(s)	719
PpsI	GAGTC	1 cut(s)	719
PscI	ACATGT	1 cut(s)	620
Psp124BI	GAGCTC	2 cut(s)	56, 142
Psp6I	CCWGG	1 cut(s)	188
PspFI	CCCAGC	1 cut(s)	842
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	647, 796
PspXI	VCTCGAGB	1 cut(s)	727
PstNI	CAGNNNCTG	1 cut(s)	842
PsuI	RGATCY	2 cut(s)	645, 814
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
SacI	GAGCTC	2 cut(s)	56, 142
SapI	GCTCTTC	1 cut(s)	368
SaqAI	TTAA	3 cut(s)	150, 357, 747
SatI	GCNGC	6 cut(s)	127, 130, 339, 573, 768, 771
Sau3AI	GATC	6 cut(s)	201, 326, 577, 645, 814, 833
SchI	GAGTC	1 cut(s)	719
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	3 cut(s)	56, 142, 160
Sfr274I	CTCGAG	1 cut(s)	727
SlaI	CTCGAG	1 cut(s)	727
SmlI	CTYRAG	2 cut(s)	689, 727
SmoI	CTYRAG	2 cut(s)	689, 727
Sse9I	AATT	2 cut(s)	282, 463
SsiI	CCGC	4 cut(s)	111, 126, 132, 767
SspI	AATATT	1 cut(s)	514
SspMI	CTAG	4 cut(s)	530, 602, 734, 907
SstI	GAGCTC	2 cut(s)	56, 142
StyD4I	CCNGG	1 cut(s)	188
TaaI	ACNGT	2 cut(s)	118, 805
TaiI	ACGT	2 cut(s)	249, 678
TaqI	TCGA	5 cut(s)	214, 229, 410, 635, 728
TasI	AATT	2 cut(s)	282, 463
TauI	GCSGC	2 cut(s)	129, 770
TfiI	GAWTC	5 cut(s)	412, 475, 497, 651, 709
Tru1I	TTAA	3 cut(s)	150, 357, 747
Tru9I	TTAA	3 cut(s)	150, 357, 747
TscAI	CASTG	4 cut(s)	73, 211, 550, 881
TseFI	GTSAC	3 cut(s)	64, 247, 541
TseI	GCWGC	4 cut(s)	129, 338, 572, 770
Tsp45I	GTSAC	3 cut(s)	64, 247, 541
TspDTI	ATGAA	3 cut(s)	262, 296, 701
TspRI	CASTG	4 cut(s)	73, 211, 550, 881
VneI	GTGCAC	1 cut(s)	156
XceI	RCATGY	2 cut(s)	382, 624
XcmI	CCANNNNNNNNNTGG	1 cut(s)	29
XhoI	CTCGAG	1 cut(s)	727
XmiI	GTMKAC	1 cut(s)	291
XspI	CTAG	4 cut(s)	530, 602, 734, 907

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.