Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006517

Physical Location & Seq

Genomic Coordinates Forward (+)

10354022 .. 10355269

Gene Structure 1248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG124400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGCGTGCTATTCTGGCGACAAGTCCTACTGGCACTGTAATGGGGCTCGGTATTAGCCCCATTGTGACATCTGGAATGATCATGAGTTTCTTAGCCAGTTCAAAACTTATTCAAGTGAACAACAGAATCCGCGAGGATCTTGAACTGTTCAATGGGGCACAGAAGTTGTTGGGAGTCCTCATTGCTGTTGGTCAAGCTGTTACTTATGTGCTATCAGGAATGTACGGCAATGTAGGTTTTGTTAATGCCCTTCTCATCATAACTCAGCTTTCCTTAGCTGGAGTCATAGTGATGTGCTTAGATGAGCTTTTCCAAAAGGGATATGGTCTCGTGTCATCTGCGAGCTCCCTTTTCGTCACTGCCAACATCTGCGAAAACATCATTTGGAAGGCTTTTGACCCCGCAACCGTAAATAGCGGCAGCGGGGGAGCTCATGAGTTTATAGGTGCACTTGTTGCTTTGTTCCATCTCATAATATCCAGGACAGACAAGATCAGTGCTATTCGAGAGGCTTTCTTTCGAGAACACCTACCAAACGTGACAAACCTACTTGCCACTATCTTCATCTTTCTAATTGTTGTCTACTTGCAATGCTTTCATGTGGCTTTGAAAGTGAGATCAAAGGGAGCAGCGTCATCATATCCTATTAAGCTCTTCTATACTTCTAACATGCCCGTCATTCTCCAATCCGCTCTTGTCTCGAATCTTTGTTTTGTATCTCATTTTCTTCACAAGAGGTACAATGGGAATAATAATTTCTTGGTGAATCTCATGGGGAAGTGGAAGGAATCTGGCCAGCTCAATATTCTCATTGGTGGTCTATCTTACTATGTCACTGCACCAGCAAGCTTGGCAGATATGGCAGCCGATCCCATCCACGCAATGTTTTATCTAGTCTTTATGCTTGCAACATGTGCATTGCTATCGAAAACTTGGATCCGATTCTCTGGTTCTTCTGCGAGAGACGTAGCAAAGCAACTCAAGGAACAAAACATGGGGATTCATGGACATAAAGACTCGAGCCTAGAGAAGAAGCTTAATCGCAATATACCTATTGCGGCTGCGCTTGGAGGAATGTGCATTGGTGCCTTGACTGTTGCGGCAGATCTCATGGGAGCAATGGGATCAGGAGCTGGGATTTTGCTTGCTGTTACAATCATATATCAGTGTTGGGAGACATATGAGGAGAAAGTGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0012505 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0022804 GO:0022857 GO:0022884 GO:0031204 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Plug_translocon SecY

Protein Analysis

399

Amino Acids

43.08

Weight (kDa)

8.93

Isoelectric Point (pI)

27.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SecY	PF00344	12 - 390	2.1e-62	SecY

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78720 AT1G78720 AT1G78720
fragaria_vesca	FvH4_1g11090
malus_domestica	MD10G1274900.v1.1
prunus_persica	Prupe.4G067500_v2.0.a1
pyrus_communis	pycom10g22950
rosa_chinensis	RchiOBHm_Chr2g0098361 RchiOBHm_Chr5g0011881
rosa_laevigata	RLG00000016794 RLG00000031865
rosa_multiflora	Rmu_co8311821.1_g000001 Rmu_sc0001475.1_g000010 Rmu_sc0042416.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064720 Rroxscaffold_2G00144040
rosa_rugosa	Rorug02G0072500 Rorug04G0459500
rosa_samantha	Rh2AG119600 Rh2BG122700 Rh2CG124300 Rh2DG124400 Rh5AG091000 Rh5DG087200
rosa_wichuraiana	Rw2G009370 Rw5G007950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1085
AccBSI	CCGCTC	1 cut(s)	692
AccI	GTMKAC	1 cut(s)	582
AccII	CGCG	1 cut(s)	132
AciI	CCGC	7 cut(s)	130, 402, 417, 423, 690, 1058, 1100
AclWI	GGATC	5 cut(s)	144, 863, 931, 944, 1132
AcoI	YGGCCR	1 cut(s)	793
AfaI	GTAC	2 cut(s)	224, 740
AflIII	ACRYGT	1 cut(s)	911
AgsI	TTSAA	5 cut(s)	102, 113, 143, 151, 610
AjnI	CCWGG	1 cut(s)	479
Alw21I	GWGCWC	3 cut(s)	347, 433, 451
Alw26I	GTCTC	4 cut(s)	332, 703, 957, 1169
Alw44I	GTGCAC	1 cut(s)	447
AlwI	GGATC	5 cut(s)	144, 863, 931, 944, 1132
AlwNI	CAGNNNCTG	1 cut(s)	1133
Ama87I	CYCGRG	1 cut(s)	1018
AoxI	GGCC	1 cut(s)	793
ApaLI	GTGCAC	1 cut(s)	447
ApeKI	GCWGC	4 cut(s)	420, 629, 863, 1061
AspLEI	GCGC	1 cut(s)	1066
AsuHPI	GGTGA	1 cut(s)	775
AvaI	CYCGRG	1 cut(s)	1018
BaeGI	GKGCMC	2 cut(s)	160, 451
BalI	TGGCCA	1 cut(s)	795
BamHI	GGATCC	1 cut(s)	936
BanI	GGYRCC	1 cut(s)	1085
BanII	GRGCYC	3 cut(s)	48, 347, 433
BauI	CACGAG	1 cut(s)	329
Bbv12I	GWGCWC	3 cut(s)	347, 433, 451
BbvI	GCAGC	4 cut(s)	432, 641, 875, 1048
BccI	CCATC	2 cut(s)	474, 881
BceAI	ACGGC	1 cut(s)	241
BcgI	CGANNNNNNTGC	2 cut(s)	906, 940
BciT130I	CCWGG	1 cut(s)	481
BclI	TGATCA	1 cut(s)	78
BcoDI	GTCTC	4 cut(s)	332, 703, 957, 1169
BfaI	CTAG	3 cut(s)	893, 1025, 1198
BglII	AGATCT	1 cut(s)	1105
BisI	GCNGC	7 cut(s)	418, 421, 630, 864, 1059, 1062, 1101
BlsI	GCNGC	7 cut(s)	419, 422, 631, 865, 1060, 1063, 1102
Bme1390I	CCNGG	1 cut(s)	481
BmeT110I	CYCGRG	1 cut(s)	1018
BmiI	GGNNCC	2 cut(s)	938, 1087
BmrFI	CCNGG	1 cut(s)	481
BpmI	CTGGAG	1 cut(s)	300
Bpu10I	CCTNAGC	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	965
BsaI	GGTCTC	1 cut(s)	332
BsaXI	ACNNNNNCTCC	3 cut(s)	273, 303, 1178
Bse1I	ACTGG	2 cut(s)	34, 96
Bse3DI	GCAATG	6 cut(s)	180, 235, 596, 888, 917, 1125
BseBI	CCWGG	1 cut(s)	481
BseGI	GGATG	1 cut(s)	873
BseMI	GCAATG	6 cut(s)	180, 235, 596, 888, 917, 1125
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	2 cut(s)	34, 96
BseRI	GAGGAG	1 cut(s)	1199
BseSI	GKGCMC	2 cut(s)	160, 451
BseXI	GCAGC	4 cut(s)	432, 641, 875, 1048
BseYI	CCCAGC	1 cut(s)	1133
BsgI	GTGCAG	1 cut(s)	822
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	795
BshNI	GGYRCC	1 cut(s)	1085
BsiHKAI	GWGCWC	3 cut(s)	347, 433, 451
BsiHKCI	CYCGRG	1 cut(s)	1018
BsmAI	GTCTC	4 cut(s)	332, 703, 957, 1169
BsmBI	CGTCTC	1 cut(s)	957
BsnI	GGCC	1 cut(s)	795
Bso31I	GGTCTC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	1018
Bsp1286I	GDGCHC	5 cut(s)	48, 160, 347, 433, 451
Bsp143I	GATC	8 cut(s)	78, 136, 492, 617, 868, 936, 1105, 1124
BspACI	CCGC	7 cut(s)	130, 402, 417, 423, 690, 1058, 1100
BspANI	GGCC	1 cut(s)	795
BspCNI	CTCAG	1 cut(s)	277
BspFNI	CGCG	1 cut(s)	132
BspHI	TCATGA	2 cut(s)	81, 433
BspLI	GGNNCC	2 cut(s)	938, 1087
BspPI	GGATC	5 cut(s)	144, 863, 931, 944, 1132
BspQI	GCTCTTC	1 cut(s)	659
BspT107I	GGYRCC	1 cut(s)	1085
BspTNI	GGTCTC	1 cut(s)	332
BsrBI	CCGCTC	1 cut(s)	692
BsrDI	GCAATG	6 cut(s)	180, 235, 596, 888, 917, 1125
BsrI	ACTGG	2 cut(s)	34, 96
BssMI	GATC	8 cut(s)	78, 136, 492, 617, 868, 936, 1105, 1124
BssSI	CACGAG	1 cut(s)	329
Bst2BI	CACGAG	1 cut(s)	329
Bst2UI	CCWGG	1 cut(s)	481
Bst4CI	ACNGT	4 cut(s)	37, 147, 409, 1096
Bst6I	CTCTTC	1 cut(s)	659
BstAPI	GCANNNNNTGC	2 cut(s)	455, 914
BstC8I	GCNNGC	6 cut(s)	6, 343, 797, 847, 906, 1146
BstDEI	CTNAG	4 cut(s)	91, 264, 274, 298
BstF5I	GGATG	1 cut(s)	873
BstFNI	CGCG	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	1066
BstKTI	GATC	8 cut(s)	81, 139, 495, 620, 871, 939, 1108, 1127
BstMAI	GTCTC	4 cut(s)	332, 703, 957, 1169
BstMBI	GATC	8 cut(s)	78, 136, 492, 617, 868, 936, 1105, 1124
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 455, 851, 860, 914
BstNI	CCWGG	1 cut(s)	481
BstNSI	RCATGY	2 cut(s)	673, 915
BstSCI	CCNGG	1 cut(s)	479
BstSLI	GKGCMC	2 cut(s)	160, 451
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	4 cut(s)	432, 641, 875, 1048
BstX2I	RGATCY	3 cut(s)	136, 936, 1105
BstYI	RGATCY	3 cut(s)	136, 936, 1105
BsuRI	GGCC	1 cut(s)	795
BtsCI	GGATG	1 cut(s)	873
BtsI	GCAGTG	2 cut(s)	357, 834
BtsIMutI	CAGTG	5 cut(s)	33, 357, 502, 834, 1172
Cac8I	GCNNGC	6 cut(s)	6, 343, 797, 847, 906, 1146
CaiI	CAGNNNCTG	1 cut(s)	1133
CciI	TCATGA	2 cut(s)	81, 433
CfoI	GCGC	1 cut(s)	1066
CseI	GACGC	1 cut(s)	621
Csp6I	GTAC	2 cut(s)	223, 739
CviAII	CATG	9 cut(s)	82, 434, 599, 670, 772, 912, 994, 1004, 1111
CviQI	GTAC	2 cut(s)	223, 739
DdeI	CTNAG	4 cut(s)	91, 264, 274, 298
DpnI	GATC	8 cut(s)	80, 138, 494, 619, 870, 938, 1107, 1126
DpnII	GATC	8 cut(s)	78, 136, 492, 617, 868, 936, 1105, 1124
EaeI	YGGCCR	1 cut(s)	793
Eam1104I	CTCTTC	1 cut(s)	659
EarI	CTCTTC	1 cut(s)	659
Ecl136II	GAGCTC	2 cut(s)	345, 431
Eco24I	GRGCYC	3 cut(s)	48, 347, 433
Eco31I	GGTCTC	1 cut(s)	332
Eco53kI	GAGCTC	2 cut(s)	345, 431
Eco88I	CYCGRG	1 cut(s)	1018
EcoICRI	GAGCTC	2 cut(s)	345, 431
EcoRII	CCWGG	1 cut(s)	479
EcoT38I	GRGCYC	3 cut(s)	48, 347, 433
Esp3I	CGTCTC	1 cut(s)	957
FaeI	CATG	9 cut(s)	85, 437, 602, 673, 775, 915, 997, 1007, 1114
FatI	CATG	9 cut(s)	81, 433, 598, 669, 771, 911, 993, 1003, 1110
FauI	CCCGC	2 cut(s)	409, 416
FauNDI	CATATG	1 cut(s)	1180
FbaI	TGATCA	1 cut(s)	78
FblI	GTMKAC	1 cut(s)	582
Fnu4HI	GCNGC	7 cut(s)	418, 421, 630, 864, 1059, 1062, 1101
FokI	GGATG	1 cut(s)	860
FriOI	GRGCYC	3 cut(s)	48, 347, 433
Fsp4HI	GCNGC	7 cut(s)	418, 421, 630, 864, 1059, 1062, 1101
FspBI	CTAG	3 cut(s)	893, 1025, 1198
GlaI	GCGC	1 cut(s)	1065
GluI	GCNGC	7 cut(s)	418, 421, 630, 864, 1059, 1062, 1101
GsaI	CCCAGC	1 cut(s)	1137
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	795
HgaI	GACGC	1 cut(s)	621
HhaI	GCGC	1 cut(s)	1066
Hin1II	CATG	9 cut(s)	85, 437, 602, 673, 775, 915, 997, 1007, 1114
Hin6I	GCGC	1 cut(s)	1064
HinP1I	GCGC	1 cut(s)	1064
HindIII	AAGCTT	2 cut(s)	847, 1034
HinfI	GANTC	9 cut(s)	126, 174, 282, 703, 766, 788, 942, 1000, 1016
HphI	GGTGA	1 cut(s)	775
Hpy166II	GTNNAC	3 cut(s)	118, 449, 583
Hpy188I	TCNGA	1 cut(s)	941
Hpy188III	TCNNGA	9 cut(s)	72, 82, 140, 216, 434, 506, 521, 700, 1128
Hpy8I	GTNNAC	3 cut(s)	118, 449, 583
HpyAV	CCTTC	3 cut(s)	260, 382, 778
HpyCH4III	ACNGT	4 cut(s)	37, 147, 409, 1096
HpyCH4IV	ACGT	2 cut(s)	537, 966
HpyCH4V	TGCA	6 cut(s)	449, 589, 839, 908, 917, 1080
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 455, 851, 860, 914
HpyF3I	CTNAG	4 cut(s)	91, 264, 274, 298
HpySE526I	ACGT	2 cut(s)	537, 966
Hsp92II	CATG	9 cut(s)	85, 437, 602, 673, 775, 915, 997, 1007, 1114
HspAI	GCGC	1 cut(s)	1064
Ksp22I	TGATCA	1 cut(s)	78
Kzo9I	GATC	8 cut(s)	78, 136, 492, 617, 868, 936, 1105, 1124
LguI	GCTCTTC	1 cut(s)	659
LmnI	GCTCC	5 cut(s)	350, 428, 626, 1115, 1130
Lsp1109I	GCAGC	4 cut(s)	432, 641, 875, 1048
MaeI	CTAG	3 cut(s)	893, 1025, 1198
MaeII	ACGT	2 cut(s)	537, 966
MaeIII	GTNAC	6 cut(s)	64, 199, 355, 538, 832, 1150
MalI	GATC	8 cut(s)	80, 138, 494, 619, 870, 938, 1107, 1126
MbiI	CCGCTC	1 cut(s)	692
MboI	GATC	8 cut(s)	78, 136, 492, 617, 868, 936, 1105, 1124
MboII	GAAGA	5 cut(s)	553, 646, 719, 945, 1042
MflI	RGATCY	3 cut(s)	136, 936, 1105
MhlI	GDGCHC	5 cut(s)	48, 160, 347, 433, 451
MlsI	TGGCCA	1 cut(s)	795
MluCI	AATT	2 cut(s)	573, 754
MluNI	TGGCCA	1 cut(s)	795
MlyI	GAGTC	3 cut(s)	183, 291, 1010
MnlI	CCTC	6 cut(s)	127, 188, 502, 729, 1064, 1177
Mox20I	TGGCCA	1 cut(s)	795
MscI	TGGCCA	1 cut(s)	795
MseI	TTAA	3 cut(s)	243, 648, 1038
MslI	CAYNNNNRTG	2 cut(s)	38, 290
Msp20I	TGGCCA	1 cut(s)	795
MspA1I	CMGCKG	1 cut(s)	423
MspR9I	CCNGG	1 cut(s)	481
MvaI	CCWGG	1 cut(s)	481
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	5 cut(s)	14, 455, 851, 860, 914
NdeI	CATATG	1 cut(s)	1180
NdeII	GATC	8 cut(s)	78, 136, 492, 617, 868, 936, 1105, 1124
NlaIII	CATG	9 cut(s)	85, 437, 602, 673, 775, 915, 997, 1007, 1114
NlaIV	GGNNCC	2 cut(s)	938, 1087
NmuCI	GTSAC	4 cut(s)	64, 355, 538, 832
NspI	RCATGY	2 cut(s)	673, 915
PaeR7I	CTCGAG	1 cut(s)	1018
PagI	TCATGA	2 cut(s)	81, 433
PciI	ACATGT	1 cut(s)	911
PciSI	GCTCTTC	1 cut(s)	659
PfeI	GAWTC	6 cut(s)	126, 703, 766, 788, 942, 1000
PfoI	TCCNGGA	1 cut(s)	479
PkrI	GCNGC	7 cut(s)	419, 422, 631, 865, 1060, 1063, 1102
PleI	GAGTC	3 cut(s)	182, 290, 1010
PpsI	GAGTC	3 cut(s)	182, 290, 1010
PscI	ACATGT	1 cut(s)	911
Psp124BI	GAGCTC	2 cut(s)	347, 433
Psp6I	CCWGG	1 cut(s)	479
PspFI	CCCAGC	1 cut(s)	1133
PspGI	CCWGG	1 cut(s)	479
PspN4I	GGNNCC	2 cut(s)	938, 1087
PspXI	VCTCGAGB	1 cut(s)	1018
PstNI	CAGNNNCTG	1 cut(s)	1133
PsuI	RGATCY	3 cut(s)	136, 936, 1105
RsaI	GTAC	2 cut(s)	224, 740
RsaNI	GTAC	2 cut(s)	223, 739
RseI	CAYNNNNRTG	2 cut(s)	38, 290
SacI	GAGCTC	2 cut(s)	347, 433
SapI	GCTCTTC	1 cut(s)	659
SaqAI	TTAA	3 cut(s)	243, 648, 1038
SatI	GCNGC	7 cut(s)	418, 421, 630, 864, 1059, 1062, 1101
Sau3AI	GATC	8 cut(s)	78, 136, 492, 617, 868, 936, 1105, 1124
SchI	GAGTC	3 cut(s)	183, 291, 1010
ScrFI	CCNGG	1 cut(s)	481
SduI	GDGCHC	5 cut(s)	48, 160, 347, 433, 451
Sfr274I	CTCGAG	1 cut(s)	1018
SlaI	CTCGAG	1 cut(s)	1018
SmiMI	CAYNNNNRTG	2 cut(s)	38, 290
SmlI	CTYRAG	2 cut(s)	980, 1018
SmoI	CTYRAG	2 cut(s)	980, 1018
Sse9I	AATT	2 cut(s)	573, 754
SsiI	CCGC	7 cut(s)	130, 402, 417, 423, 690, 1058, 1100
SspI	AATATT	1 cut(s)	805
SspMI	CTAG	3 cut(s)	893, 1025, 1198
SstI	GAGCTC	2 cut(s)	347, 433
StyD4I	CCNGG	1 cut(s)	479
TaaI	ACNGT	4 cut(s)	37, 147, 409, 1096
TaiI	ACGT	2 cut(s)	540, 969
TaqI	TCGA	5 cut(s)	505, 520, 701, 926, 1019
TasI	AATT	2 cut(s)	573, 754
TauI	GCSGC	3 cut(s)	420, 1061, 1103
TfiI	GAWTC	6 cut(s)	126, 703, 766, 788, 942, 1000
Tru1I	TTAA	3 cut(s)	243, 648, 1038
Tru9I	TTAA	3 cut(s)	243, 648, 1038
TscAI	CASTG	5 cut(s)	40, 364, 502, 841, 1172
TseFI	GTSAC	4 cut(s)	64, 355, 538, 832
TseI	GCWGC	4 cut(s)	420, 629, 863, 1061
Tsp45I	GTSAC	4 cut(s)	64, 355, 538, 832
TspDTI	ATGAA	3 cut(s)	553, 587, 992
TspRI	CASTG	5 cut(s)	40, 364, 502, 841, 1172
VneI	GTGCAC	1 cut(s)	447
XceI	RCATGY	2 cut(s)	673, 915
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XhoI	CTCGAG	1 cut(s)	1018
XmiI	GTMKAC	1 cut(s)	582
XspI	CTAG	3 cut(s)	893, 1025, 1198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.