Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006517

Physical Location & Seq

Genomic Coordinates Forward (+)

10954948 .. 10956198

Gene Structure 1251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG124300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ATGCGTGCTATTCTGGCGACAAGTCCTACTGGCACTGTAATGGGGCTCGGTATTAGCCCCATTGTGACATCTGGAATGATCATGAGTTTCATAGCCAGTTCAAAACTTATTCAAGTGAACAACAGAATCCGCGAGGATCTTGAACTGTTCAATGGGGCGCAGAAGTTGTTGGGAGTCCTCATTGCTGTTGGTCAAGCTGTTACTTATGTGCTATCAGGAATGTACGGCAATGTAGGTTTTGTTAATGCCCTTCTCATCATAACTCAGCTTTCCTTAGCTGGAGTCATAGTGATGTGCTTAGATGAGCTTTTCCAAAAGGGATATGGTCTCGTGTCATCTGCGAGCTCCCTTTTCGTCACTGCCAACATCTGCGAAAACATCATTTGGAAGGCTTTTGACCCCGCAACTGTAAACAGCGGCAGCGGGGGAGCTCATGAGTTTAAAGGTGCACTTGTTGCTTTGTTCCATCTCATAATATCCAGGACAGACAAGATCATTGCTATTCGAGAGGCTTTCTTTCGAGAACACCTACCAAACGTGACAAACCTACTTGCCACTATCTTCATCTTTCTAATTGTTGTCTACTTGCAATGCTTTCATGTGGCTTTGAAAGTGAGATCAAAGGGAGCAGCGCCATCATATCCTATTAAGCTCTTCTATACTTCTAACATGCCCATCATTCTCCAATCCGCTCTCGTCTCGAATCTTTGTTTTGTATCTCATTTTCTTCACAAGAGGTACAATGGGAATAATAATAATTTCTTGGTGAATCTCATGGGGAAGTGGAAGGAATCTGGCCAGCTCAATATTCTCATTGGTGGTCTAGCTTACTATGTCACTGCACCAGCAAGCTTGGCAGATATGGCAGCCGATCCCATCCACGCAATGTTTTATCTAGTCTTTATGCTTGCAACATGTGCATTGCTATCGAAAACTTGGATCCGATTCTCTGGTTCTTCTGCGAGAGACGTAGCAAAGCAACTCAAGGAACAAAACATGGGGATTCATGGACATATAGACTCGAGCCTAGAGAAGAAGCTTAATCGCAATATACCTATTGCGGCTGCGCTTGGAGGAATGTGCATTGGTGCCTTGACTGTTGTGGCAGATCTCATGGGAGCAATGGGATCAGGAGCAGGGATTTTGCTTGCTGTTACAATCATATATCAGTGTTGGGAGACATATGAGGAGAAAGAGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006605 GO:0006612 GO:0006620 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008320 GO:0008565 GO:0012505 GO:0015031 GO:0015399 GO:0015405 GO:0015450 GO:0015833 GO:0022804 GO:0022857 GO:0022884 GO:0031204 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0042887 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0070972 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072599 GO:0072657 GO:0090150 GO:1904680

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Plug_translocon SecY

Protein Analysis

400

Amino Acids

43.29

Weight (kDa)

8.82

Isoelectric Point (pI)

29.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SecY	PF00344	12 - 391	3.1e-60	SecY

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78720 AT1G78720 AT1G78720
fragaria_vesca	FvH4_1g11090
malus_domestica	MD10G1274900.v1.1
prunus_persica	Prupe.4G067500_v2.0.a1
pyrus_communis	pycom10g22950
rosa_chinensis	RchiOBHm_Chr2g0098361 RchiOBHm_Chr5g0011881
rosa_laevigata	RLG00000016794 RLG00000031865
rosa_multiflora	Rmu_co8311821.1_g000001 Rmu_sc0001475.1_g000010 Rmu_sc0042416.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064720 Rroxscaffold_2G00144040
rosa_rugosa	Rorug02G0072500 Rorug04G0459500
rosa_samantha	Rh2AG119600 Rh2BG122700 Rh2CG124300 Rh2DG124400 Rh5AG091000 Rh5DG087200
rosa_wichuraiana	Rw2G009370 Rw5G007950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1088
AccBSI	CCGCTC	1 cut(s)	692
AccI	GTMKAC	1 cut(s)	582
AccII	CGCG	1 cut(s)	132
AciI	CCGC	6 cut(s)	130, 402, 417, 423, 690, 1061
AclWI	GGATC	5 cut(s)	144, 866, 934, 947, 1135
AcoI	YGGCCR	1 cut(s)	796
AfaI	GTAC	2 cut(s)	224, 740
AflIII	ACRYGT	1 cut(s)	914
AgsI	TTSAA	5 cut(s)	102, 113, 143, 151, 610
AjnI	CCWGG	1 cut(s)	479
Alw21I	GWGCWC	3 cut(s)	347, 433, 451
Alw26I	GTCTC	4 cut(s)	332, 703, 960, 1172
Alw44I	GTGCAC	1 cut(s)	447
AlwI	GGATC	5 cut(s)	144, 866, 934, 947, 1135
Ama87I	CYCGRG	1 cut(s)	1021
AoxI	GGCC	1 cut(s)	796
ApaLI	GTGCAC	1 cut(s)	447
ApeKI	GCWGC	4 cut(s)	420, 629, 866, 1064
AspLEI	GCGC	3 cut(s)	160, 634, 1069
AsuHPI	GGTGA	1 cut(s)	778
AvaI	CYCGRG	1 cut(s)	1021
BaeGI	GKGCMC	1 cut(s)	451
BalI	TGGCCA	1 cut(s)	798
BamHI	GGATCC	1 cut(s)	939
BanI	GGYRCC	1 cut(s)	1088
BanII	GRGCYC	3 cut(s)	48, 347, 433
BauI	CACGAG	1 cut(s)	329
Bbv12I	GWGCWC	3 cut(s)	347, 433, 451
BbvI	GCAGC	4 cut(s)	432, 641, 878, 1051
BccI	CCATC	4 cut(s)	474, 643, 683, 884
BceAI	ACGGC	1 cut(s)	241
BcgI	CGANNNNNNTGC	2 cut(s)	909, 943
BciT130I	CCWGG	1 cut(s)	481
BclI	TGATCA	1 cut(s)	78
BcoDI	GTCTC	4 cut(s)	332, 703, 960, 1172
BfaI	CTAG	4 cut(s)	824, 896, 1028, 1201
BfoI	RGCGCY	1 cut(s)	635
BglII	AGATCT	1 cut(s)	1108
BisI	GCNGC	6 cut(s)	418, 421, 630, 867, 1062, 1065
BlsI	GCNGC	6 cut(s)	419, 422, 631, 868, 1063, 1066
Bme1390I	CCNGG	1 cut(s)	481
BmeT110I	CYCGRG	1 cut(s)	1021
BmiI	GGNNCC	2 cut(s)	941, 1090
BmrFI	CCNGG	1 cut(s)	481
BpmI	CTGGAG	1 cut(s)	300
Bpu10I	CCTNAGC	1 cut(s)	274
BpuEI	CTTGAG	1 cut(s)	968
BsaI	GGTCTC	1 cut(s)	332
BsaXI	ACNNNNNCTCC	3 cut(s)	273, 303, 1181
Bse1I	ACTGG	2 cut(s)	34, 96
Bse3DI	GCAATG	7 cut(s)	180, 235, 495, 596, 891, 920, 1128
BseBI	CCWGG	1 cut(s)	481
BseGI	GGATG	1 cut(s)	876
BseMI	GCAATG	7 cut(s)	180, 235, 495, 596, 891, 920, 1128
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	2 cut(s)	34, 96
BseRI	GAGGAG	1 cut(s)	1202
BseSI	GKGCMC	1 cut(s)	451
BseXI	GCAGC	4 cut(s)	432, 641, 878, 1051
BsgI	GTGCAG	1 cut(s)	825
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	798
BshNI	GGYRCC	1 cut(s)	1088
BsiHKAI	GWGCWC	3 cut(s)	347, 433, 451
BsiHKCI	CYCGRG	1 cut(s)	1021
BsmAI	GTCTC	4 cut(s)	332, 703, 960, 1172
BsmBI	CGTCTC	2 cut(s)	703, 960
BsnI	GGCC	1 cut(s)	798
Bso31I	GGTCTC	1 cut(s)	332
BsoBI	CYCGRG	1 cut(s)	1021
Bsp1286I	GDGCHC	4 cut(s)	48, 347, 433, 451
Bsp143I	GATC	8 cut(s)	78, 136, 492, 617, 871, 939, 1108, 1127
BspACI	CCGC	6 cut(s)	130, 402, 417, 423, 690, 1061
BspANI	GGCC	1 cut(s)	798
BspCNI	CTCAG	1 cut(s)	277
BspFNI	CGCG	1 cut(s)	132
BspHI	TCATGA	2 cut(s)	81, 433
BspLI	GGNNCC	2 cut(s)	941, 1090
BspPI	GGATC	5 cut(s)	144, 866, 934, 947, 1135
BspQI	GCTCTTC	1 cut(s)	659
BspT107I	GGYRCC	1 cut(s)	1088
BspTNI	GGTCTC	1 cut(s)	332
BsrBI	CCGCTC	1 cut(s)	692
BsrDI	GCAATG	7 cut(s)	180, 235, 495, 596, 891, 920, 1128
BsrI	ACTGG	2 cut(s)	34, 96
BssMI	GATC	8 cut(s)	78, 136, 492, 617, 871, 939, 1108, 1127
BssSI	CACGAG	1 cut(s)	329
Bst2BI	CACGAG	1 cut(s)	329
Bst2UI	CCWGG	1 cut(s)	481
Bst4CI	ACNGT	4 cut(s)	37, 147, 409, 1099
Bst6I	CTCTTC	1 cut(s)	659
BstAPI	GCANNNNNTGC	2 cut(s)	455, 917
BstC8I	GCNNGC	6 cut(s)	6, 343, 800, 850, 909, 1149
BstDEI	CTNAG	3 cut(s)	264, 274, 298
BstF5I	GGATG	1 cut(s)	876
BstFNI	CGCG	1 cut(s)	132
BstH2I	RGCGCY	1 cut(s)	635
BstHHI	GCGC	3 cut(s)	160, 634, 1069
BstKTI	GATC	8 cut(s)	81, 139, 495, 620, 874, 942, 1111, 1130
BstMAI	GTCTC	4 cut(s)	332, 703, 960, 1172
BstMBI	GATC	8 cut(s)	78, 136, 492, 617, 871, 939, 1108, 1127
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 455, 854, 863, 917
BstNI	CCWGG	1 cut(s)	481
BstNSI	RCATGY	2 cut(s)	673, 918
BstSCI	CCNGG	1 cut(s)	479
BstSLI	GKGCMC	1 cut(s)	451
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	4 cut(s)	432, 641, 878, 1051
BstX2I	RGATCY	3 cut(s)	136, 939, 1108
BstYI	RGATCY	3 cut(s)	136, 939, 1108
BsuRI	GGCC	1 cut(s)	798
BtsCI	GGATG	1 cut(s)	876
BtsI	GCAGTG	2 cut(s)	357, 837
BtsIMutI	CAGTG	4 cut(s)	33, 357, 837, 1175
Cac8I	GCNNGC	6 cut(s)	6, 343, 800, 850, 909, 1149
CciI	TCATGA	2 cut(s)	81, 433
CfoI	GCGC	3 cut(s)	160, 634, 1069
Csp6I	GTAC	2 cut(s)	223, 739
CviAII	CATG	9 cut(s)	82, 434, 599, 670, 775, 915, 997, 1007, 1114
CviQI	GTAC	2 cut(s)	223, 739
DdeI	CTNAG	3 cut(s)	264, 274, 298
DpnI	GATC	8 cut(s)	80, 138, 494, 619, 873, 941, 1110, 1129
DpnII	GATC	8 cut(s)	78, 136, 492, 617, 871, 939, 1108, 1127
DraI	TTTAAA	1 cut(s)	442
EaeI	YGGCCR	1 cut(s)	796
Eam1104I	CTCTTC	1 cut(s)	659
EarI	CTCTTC	1 cut(s)	659
Ecl136II	GAGCTC	2 cut(s)	345, 431
Eco24I	GRGCYC	3 cut(s)	48, 347, 433
Eco31I	GGTCTC	1 cut(s)	332
Eco53kI	GAGCTC	2 cut(s)	345, 431
Eco88I	CYCGRG	1 cut(s)	1021
EcoICRI	GAGCTC	2 cut(s)	345, 431
EcoRII	CCWGG	1 cut(s)	479
EcoT38I	GRGCYC	3 cut(s)	48, 347, 433
Esp3I	CGTCTC	2 cut(s)	703, 960
FaeI	CATG	9 cut(s)	85, 437, 602, 673, 778, 918, 1000, 1010, 1117
FalI	AAGNNNNNCTT	2 cut(s)	435, 467
FatI	CATG	9 cut(s)	81, 433, 598, 669, 774, 914, 996, 1006, 1113
FauI	CCCGC	2 cut(s)	409, 416
FauNDI	CATATG	1 cut(s)	1183
FbaI	TGATCA	1 cut(s)	78
FblI	GTMKAC	1 cut(s)	582
Fnu4HI	GCNGC	6 cut(s)	418, 421, 630, 867, 1062, 1065
FokI	GGATG	1 cut(s)	863
FriOI	GRGCYC	3 cut(s)	48, 347, 433
Fsp4HI	GCNGC	6 cut(s)	418, 421, 630, 867, 1062, 1065
FspBI	CTAG	4 cut(s)	824, 896, 1028, 1201
GlaI	GCGC	3 cut(s)	159, 633, 1068
GluI	GCNGC	6 cut(s)	418, 421, 630, 867, 1062, 1065
GsuI	CTGGAG	1 cut(s)	300
HaeII	RGCGCY	1 cut(s)	635
HaeIII	GGCC	1 cut(s)	798
HhaI	GCGC	3 cut(s)	160, 634, 1069
Hin1II	CATG	9 cut(s)	85, 437, 602, 673, 778, 918, 1000, 1010, 1117
Hin6I	GCGC	3 cut(s)	158, 632, 1067
HinP1I	GCGC	3 cut(s)	158, 632, 1067
HindIII	AAGCTT	2 cut(s)	850, 1037
HinfI	GANTC	9 cut(s)	126, 174, 282, 703, 769, 791, 945, 1003, 1019
HphI	GGTGA	1 cut(s)	778
Hpy166II	GTNNAC	4 cut(s)	118, 412, 449, 583
Hpy188I	TCNGA	1 cut(s)	944
Hpy188III	TCNNGA	9 cut(s)	72, 82, 140, 216, 434, 506, 521, 700, 1131
Hpy8I	GTNNAC	4 cut(s)	118, 412, 449, 583
HpyAV	CCTTC	3 cut(s)	260, 382, 781
HpyCH4III	ACNGT	4 cut(s)	37, 147, 409, 1099
HpyCH4IV	ACGT	2 cut(s)	537, 969
HpyCH4V	TGCA	6 cut(s)	449, 589, 842, 911, 920, 1083
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 455, 854, 863, 917
HpyF3I	CTNAG	3 cut(s)	264, 274, 298
HpySE526I	ACGT	2 cut(s)	537, 969
Hsp92II	CATG	9 cut(s)	85, 437, 602, 673, 778, 918, 1000, 1010, 1117
HspAI	GCGC	3 cut(s)	158, 632, 1067
Ksp22I	TGATCA	1 cut(s)	78
Kzo9I	GATC	8 cut(s)	78, 136, 492, 617, 871, 939, 1108, 1127
LguI	GCTCTTC	1 cut(s)	659
LmnI	GCTCC	5 cut(s)	350, 428, 626, 1118, 1133
Lsp1109I	GCAGC	4 cut(s)	432, 641, 878, 1051
MaeI	CTAG	4 cut(s)	824, 896, 1028, 1201
MaeII	ACGT	2 cut(s)	537, 969
MaeIII	GTNAC	6 cut(s)	64, 199, 355, 538, 835, 1153
MalI	GATC	8 cut(s)	80, 138, 494, 619, 873, 941, 1110, 1129
MbiI	CCGCTC	1 cut(s)	692
MboI	GATC	8 cut(s)	78, 136, 492, 617, 871, 939, 1108, 1127
MboII	GAAGA	5 cut(s)	553, 646, 719, 948, 1045
MflI	RGATCY	3 cut(s)	136, 939, 1108
MhlI	GDGCHC	4 cut(s)	48, 347, 433, 451
MlsI	TGGCCA	1 cut(s)	798
MluCI	AATT	2 cut(s)	573, 757
MluNI	TGGCCA	1 cut(s)	798
MlyI	GAGTC	3 cut(s)	183, 291, 1013
MnlI	CCTC	6 cut(s)	127, 188, 502, 729, 1067, 1180
Mox20I	TGGCCA	1 cut(s)	798
MscI	TGGCCA	1 cut(s)	798
MseI	TTAA	4 cut(s)	243, 441, 648, 1041
MslI	CAYNNNNRTG	2 cut(s)	38, 290
Msp20I	TGGCCA	1 cut(s)	798
MspA1I	CMGCKG	2 cut(s)	417, 423
MspR9I	CCNGG	1 cut(s)	481
MvaI	CCWGG	1 cut(s)	481
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	5 cut(s)	14, 455, 854, 863, 917
NdeI	CATATG	1 cut(s)	1183
NdeII	GATC	8 cut(s)	78, 136, 492, 617, 871, 939, 1108, 1127
NlaIII	CATG	9 cut(s)	85, 437, 602, 673, 778, 918, 1000, 1010, 1117
NlaIV	GGNNCC	2 cut(s)	941, 1090
NmuCI	GTSAC	4 cut(s)	64, 355, 538, 835
NspI	RCATGY	2 cut(s)	673, 918
PaeR7I	CTCGAG	1 cut(s)	1021
PagI	TCATGA	2 cut(s)	81, 433
PciI	ACATGT	1 cut(s)	914
PciSI	GCTCTTC	1 cut(s)	659
PfeI	GAWTC	6 cut(s)	126, 703, 769, 791, 945, 1003
PfoI	TCCNGGA	1 cut(s)	479
PkrI	GCNGC	6 cut(s)	419, 422, 631, 868, 1063, 1066
PleI	GAGTC	3 cut(s)	182, 290, 1013
PpsI	GAGTC	3 cut(s)	182, 290, 1013
PscI	ACATGT	1 cut(s)	914
Psp124BI	GAGCTC	2 cut(s)	347, 433
Psp6I	CCWGG	1 cut(s)	479
PspGI	CCWGG	1 cut(s)	479
PspN4I	GGNNCC	2 cut(s)	941, 1090
PspXI	VCTCGAGB	1 cut(s)	1021
PsuI	RGATCY	3 cut(s)	136, 939, 1108
RsaI	GTAC	2 cut(s)	224, 740
RsaNI	GTAC	2 cut(s)	223, 739
RseI	CAYNNNNRTG	2 cut(s)	38, 290
SacI	GAGCTC	2 cut(s)	347, 433
SapI	GCTCTTC	1 cut(s)	659
SaqAI	TTAA	4 cut(s)	243, 441, 648, 1041
SatI	GCNGC	6 cut(s)	418, 421, 630, 867, 1062, 1065
Sau3AI	GATC	8 cut(s)	78, 136, 492, 617, 871, 939, 1108, 1127
SchI	GAGTC	3 cut(s)	183, 291, 1013
ScrFI	CCNGG	1 cut(s)	481
SduI	GDGCHC	4 cut(s)	48, 347, 433, 451
Sfr274I	CTCGAG	1 cut(s)	1021
SlaI	CTCGAG	1 cut(s)	1021
SmiMI	CAYNNNNRTG	2 cut(s)	38, 290
SmlI	CTYRAG	2 cut(s)	983, 1021
SmoI	CTYRAG	2 cut(s)	983, 1021
Sse9I	AATT	2 cut(s)	573, 757
SsiI	CCGC	6 cut(s)	130, 402, 417, 423, 690, 1061
SspI	AATATT	1 cut(s)	808
SspMI	CTAG	4 cut(s)	824, 896, 1028, 1201
SstI	GAGCTC	2 cut(s)	347, 433
StyD4I	CCNGG	1 cut(s)	479
TaaI	ACNGT	4 cut(s)	37, 147, 409, 1099
TaiI	ACGT	2 cut(s)	540, 972
TaqI	TCGA	5 cut(s)	505, 520, 701, 929, 1022
TasI	AATT	2 cut(s)	573, 757
TauI	GCSGC	2 cut(s)	420, 1064
TfiI	GAWTC	6 cut(s)	126, 703, 769, 791, 945, 1003
Tru1I	TTAA	4 cut(s)	243, 441, 648, 1041
Tru9I	TTAA	4 cut(s)	243, 441, 648, 1041
TscAI	CASTG	4 cut(s)	40, 364, 844, 1175
TseFI	GTSAC	4 cut(s)	64, 355, 538, 835
TseI	GCWGC	4 cut(s)	420, 629, 866, 1064
Tsp45I	GTSAC	4 cut(s)	64, 355, 538, 835
TspDTI	ATGAA	4 cut(s)	79, 553, 587, 995
TspRI	CASTG	4 cut(s)	40, 364, 844, 1175
VneI	GTGCAC	1 cut(s)	447
XceI	RCATGY	2 cut(s)	673, 918
XcmI	CCANNNNNNNNNTGG	1 cut(s)	320
XhoI	CTCGAG	1 cut(s)	1021
XmiI	GTMKAC	1 cut(s)	582
XspI	CTAG	4 cut(s)	824, 896, 1028, 1201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.