Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006517

Physical Location & Seq

Genomic Coordinates Forward (+)

25223926 .. 25224904

Gene Structure 979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g22950.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGCCCATCATTCTCCAGTCTGCTCTTGTCTCCAATCTTTATTTCATCTCTCAATTGCTTTACAGGAAGTTCAGTGGGAATTTCTTCGTGAATATTCTTGGAAAGTGGCAGGAGTCTGAATATTCCGGCCAATCTGTTCCAGTTGGTGGTCTTGCCTACTATATCACGGCTCCAGGAAGCTTGGCGGATATGGCAGCCAATCCATTCCATGCTCTGTTCTATCTAGTGTTCATGCTTTCAGCCTGTGCACTCTTCTCAAAAACTTGGATTGAAGTTTCTGGTTCTTCAGCCCGAGATGTGGCTAAGCAGCTCAAGGAACAACAAATGGTGATGCCTGGACATAGAGATTCAAACTTACAGAAGGAACTAAACCGCTACATACCTACTGCGGCTGCATTCGGAGGCTTGTGCATTGGTGCCTTGACTGTTCTGGCAGATTTCATGGGAGCAATTGGTTCTGGGACTGGGATTTTGCTTGCTGTCACGATCATCTATCAGTACTTCGAGACATTTGAGAAAGAGAGGGAAAGCCAACTTGGCTTTTTCGGCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04145 ko05110 map03060 map04141 map04145 map05110

Pfam Domains

Protein Families

Plug_translocon SecY

Protein Analysis

185

Amino Acids

20.23

Weight (kDa)

6.09

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006517)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78720 AT1G78720 AT1G78720
fragaria_vesca	FvH4_1g11090
malus_domestica	MD10G1274900.v1.1
prunus_persica	Prupe.4G067500_v2.0.a1
pyrus_communis	pycom10g22950
rosa_chinensis	RchiOBHm_Chr2g0098361 RchiOBHm_Chr5g0011881
rosa_laevigata	RLG00000016794 RLG00000031865
rosa_multiflora	Rmu_co8311821.1_g000001 Rmu_sc0001475.1_g000010 Rmu_sc0042416.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064720 Rroxscaffold_2G00144040
rosa_rugosa	Rorug02G0072500 Rorug04G0459500
rosa_samantha	Rh2AG119600 Rh2BG122700 Rh2CG124300 Rh2DG124400 Rh5AG091000 Rh5DG087200
rosa_wichuraiana	Rw2G009370 Rw5G007950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	416
AccB7I	CCANNNNNTGG	1 cut(s)	146
AciI	CCGC	3 cut(s)	185, 373, 389
AcoI	YGGCCR	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	2 cut(s)	146, 298
AgsI	TTSAA	2 cut(s)	272, 351
AjnI	CCWGG	2 cut(s)	172, 334
AjuI	GAANNNNNNNTTGG	4 cut(s)	26, 58, 519, 551
AluBI	AGCT	2 cut(s)	180, 310
AluI	AGCT	2 cut(s)	180, 310
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	2 cut(s)	34, 500
Alw44I	GTGCAC	1 cut(s)	246
Ama87I	CYCGRG	1 cut(s)	291
AoxI	GGCC	2 cut(s)	127, 547
ApaLI	GTGCAC	1 cut(s)	246
ApeKI	GCWGC	3 cut(s)	194, 307, 392
ApoI	RAATTY	1 cut(s)	79
ArsI	GACNNNNNNTTYG	2 cut(s)	454, 486
Asp700I	GAANNNNTTC	1 cut(s)	83
AsuHPI	GGTGA	1 cut(s)	340
AvaI	CYCGRG	1 cut(s)	291
BaeGI	GKGCMC	1 cut(s)	250
BanI	GGYRCC	1 cut(s)	416
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	3 cut(s)	206, 319, 379
BccI	CCATC	1 cut(s)	14
BceAI	ACGGC	1 cut(s)	183
BciT130I	CCWGG	2 cut(s)	174, 336
BcoDI	GTCTC	2 cut(s)	34, 500
BfaI	CTAG	1 cut(s)	224
BglI	GCCNNNNNGGC	1 cut(s)	537
BisI	GCNGC	4 cut(s)	195, 308, 390, 393
BlpI	GCTNAGC	1 cut(s)	303
BlsI	GCNGC	4 cut(s)	196, 309, 391, 394
BmcAI	AGTACT	1 cut(s)	500
Bme1390I	CCNGG	2 cut(s)	174, 336
BmeT110I	CYCGRG	1 cut(s)	291
BmiI	GGNNCC	2 cut(s)	171, 418
BmrFI	CCNGG	2 cut(s)	174, 336
BmrI	ACTGGG	1 cut(s)	474
BmsI	GCATC	1 cut(s)	321
BmuI	ACTGGG	1 cut(s)	474
BpmI	CTGGAG	1 cut(s)	156
Bpu1102I	GCTNAGC	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	296
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 298
Bse1I	ACTGG	3 cut(s)	16, 140, 469
BseBI	CCWGG	2 cut(s)	174, 336
BseLI	CCNNNNNNNGG	2 cut(s)	146, 298
BseNI	ACTGG	3 cut(s)	16, 140, 469
BseSI	GKGCMC	1 cut(s)	250
BseXI	GCAGC	3 cut(s)	206, 319, 379
BshFI	GGCC	2 cut(s)	129, 549
BshNI	GGYRCC	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	250
BsiHKCI	CYCGRG	1 cut(s)	291
BsiSI	CCGG	1 cut(s)	126
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	2 cut(s)	146, 298
BsmAI	GTCTC	2 cut(s)	34, 500
BsmFI	GGGAC	1 cut(s)	475
BsmI	GAATGC	1 cut(s)	395
BsnI	GGCC	2 cut(s)	129, 549
BsoBI	CYCGRG	1 cut(s)	291
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	486
Bsp1720I	GCTNAGC	1 cut(s)	303
BspACI	CCGC	3 cut(s)	185, 373, 389
BspANI	GGCC	2 cut(s)	129, 549
BspLI	GGNNCC	2 cut(s)	171, 418
BspT107I	GGYRCC	1 cut(s)	416
BsrI	ACTGG	3 cut(s)	16, 140, 469
BssMI	GATC	1 cut(s)	486
Bst2UI	CCWGG	2 cut(s)	174, 336
Bst4CI	ACNGT	1 cut(s)	427
Bst6I	CTCTTC	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	1 cut(s)	303
BstKTI	GATC	1 cut(s)	489
BstMAI	GTCTC	2 cut(s)	34, 500
BstMBI	GATC	1 cut(s)	486
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 537, 546
BstNI	CCWGG	2 cut(s)	174, 336
BstSCI	CCNGG	2 cut(s)	172, 334
BstSLI	GKGCMC	1 cut(s)	250
BstV1I	GCAGC	3 cut(s)	206, 319, 379
BsuRI	GGCC	2 cut(s)	129, 549
BtsIMutI	CAGTG	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	477
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	3 cut(s)	209, 232, 442
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	1 cut(s)	303
DpnI	GATC	1 cut(s)	488
DpnII	GATC	1 cut(s)	486
EaeI	YGGCCR	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	257
EarI	CTCTTC	1 cut(s)	257
EciI	GGCGGA	1 cut(s)	200
Eco57I	CTGAAG	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	291
EcoRII	CCWGG	2 cut(s)	172, 334
FaeI	CATG	3 cut(s)	212, 235, 445
FaiI	YATR	7 cut(s)	162, 191, 210, 233, 342, 380, 443
FaqI	GGGAC	1 cut(s)	475
FatI	CATG	3 cut(s)	208, 231, 441
Fnu4HI	GCNGC	4 cut(s)	195, 308, 390, 393
Fsp4HI	GCNGC	4 cut(s)	195, 308, 390, 393
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	4 cut(s)	195, 308, 390, 393
GsuI	CTGGAG	1 cut(s)	156
HaeIII	GGCC	2 cut(s)	129, 549
HapII	CCGG	1 cut(s)	126
Hin1II	CATG	3 cut(s)	212, 235, 445
HindIII	AAGCTT	1 cut(s)	178
HinfI	GANTC	2 cut(s)	113, 347
HpaII	CCGG	1 cut(s)	126
HphI	GGTGA	1 cut(s)	340
Hpy166II	GTNNAC	1 cut(s)	248
Hpy188I	TCNGA	2 cut(s)	118, 401
Hpy188III	TCNNGA	3 cut(s)	88, 484, 505
Hpy8I	GTNNAC	1 cut(s)	248
HpyAV	CCTTC	1 cut(s)	355
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4V	TGCA	3 cut(s)	248, 395, 411
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 537, 546
HpyF3I	CTNAG	1 cut(s)	303
Hsp92II	CATG	3 cut(s)	212, 235, 445
Kzo9I	GATC	1 cut(s)	486
LmnI	GCTCC	2 cut(s)	175, 446
Lsp1109I	GCAGC	3 cut(s)	206, 319, 379
LweI	GCATC	1 cut(s)	321
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	481
MalI	GATC	1 cut(s)	488
MboI	GATC	1 cut(s)	486
MboII	GAAGA	3 cut(s)	76, 244, 276
MfeI	CAATTG	2 cut(s)	53, 450
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	3 cut(s)	53, 79, 450
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	2 cut(s)	395, 516
MroXI	GAANNNNTTC	1 cut(s)	83
MspI	CCGG	1 cut(s)	126
MspR9I	CCNGG	2 cut(s)	174, 336
MunI	CAATTG	2 cut(s)	53, 450
Mva1269I	GAATGC	1 cut(s)	395
MvaI	CCWGG	2 cut(s)	174, 336
MwoI	GCNNNNNNNGC	3 cut(s)	191, 537, 546
NdeII	GATC	1 cut(s)	486
NlaIII	CATG	3 cut(s)	212, 235, 445
NlaIV	GGNNCC	2 cut(s)	171, 418
NmuCI	GTSAC	1 cut(s)	481
PctI	GAATGC	1 cut(s)	395
PdmI	GAANNNNTTC	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	347
PflMI	CCANNNNNTGG	1 cut(s)	146
PfoI	TCCNGGA	1 cut(s)	172
PkrI	GCNGC	4 cut(s)	196, 309, 391, 394
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
Psp6I	CCWGG	2 cut(s)	172, 334
PspGI	CCWGG	2 cut(s)	172, 334
PspN4I	GGNNCC	2 cut(s)	171, 418
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
SatI	GCNGC	4 cut(s)	195, 308, 390, 393
Sau3AI	GATC	1 cut(s)	486
ScaI	AGTACT	1 cut(s)	500
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	2 cut(s)	174, 336
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	3 cut(s)	182, 312, 385
SfaNI	GCATC	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
Sse9I	AATT	3 cut(s)	53, 79, 450
SsiI	CCGC	3 cut(s)	185, 373, 389
SspI	AATATT	2 cut(s)	94, 122
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	2 cut(s)	172, 334
TaaI	ACNGT	1 cut(s)	427
TaqI	TCGA	1 cut(s)	504
TasI	AATT	3 cut(s)	53, 79, 450
TatI	WGTACW	1 cut(s)	498
TauI	GCSGC	1 cut(s)	392
TfiI	GAWTC	1 cut(s)	347
TscAI	CASTG	1 cut(s)	79
TseFI	GTSAC	1 cut(s)	481
TseI	GCWGC	3 cut(s)	194, 307, 392
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	3 cut(s)	34, 220, 430
TspRI	CASTG	1 cut(s)	79
Van91I	CCANNNNNTGG	1 cut(s)	146
VneI	GTGCAC	1 cut(s)	246
XapI	RAATTY	1 cut(s)	79
XmnI	GAANNNNTTC	1 cut(s)	83
XspI	CTAG	1 cut(s)	224
ZrmI	AGTACT	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.