Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005781

Physical Location & Seq

Genomic Coordinates Reverse (-)

30016671 .. 30018234

Gene Structure 1564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G79790.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGCGGCGGCGGCGATGCACACATCGGCGGAATTCATCAATCTGAAACCCAACATGTGGAAGAAGAATCCTGTTCGGGCCTCGGGTTCTTGCTGTCTGGGCAGCAGCAGTGGTGATGAAATCTCTCGGAAAAGGAAGCTTCCGATTCTCCTCTTCGACGTCATGGACACCATCGTCCGTGACCCCTTTTACCAGGACGTTCCGGCCTTCTTCGGAATGCCAATGAAGCAACTACTAGAGTGCAAGCACCCGATGGTCTGGATCGAATTTGAAAAGGGTTTGATTGATGAGGAGGAGCTTGCTAGAAACTTCTTTATAGATGGGAGGGATTTTGATTTGGAAGGGCTTAAGGAGTGCATGAGGTCAGGTTACTCCTACTTAGATGGCATGCAAGAGCTCCTTCAAACTTTGGCAGCTGACGACTTCGAGATTCATGCTTTCACTAACTATCCCATCTGGTACAACATTATCGAAGACAAGTTAAAGCTTTCTGCCTACTTATCATGGACGTTTTGCTCCTGTATTGCTGGGAAGAGAAAGCCTGATCCAGAGTTCTACCTCGAGGTTGTGGGACACCTCGGAGTTGAACCTTGCGACTGTATATTCATTGATGACAGGCCAACCAACGTCAAGTGTGCTATAGAGATAGGGATGGGTGGGTTATGCTTTGAGAATGCAGATTCGCTCGCTAAGGATCTCTCAGATCTAGGGATCAACGTCTCTGTACCCAAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0090711

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

HAD_2

Protein Analysis

245

Amino Acids

27.69

Weight (kDa)

4.76

Isoelectric Point (pI)

49.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79790 AT1G79790 AT1G79790
fragaria_vesca	FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710
malus_domestica	MD04G1242100.v1.1 MD12G1258900.v1.1
prunus_persica	Prupe.6G359400_v2.0.a1 Prupe.6G359400_v2.0.a1
pyrus_communis	pycom04g21350 pycom12g23740
rosa_chinensis	RchiOBHm_Chr3g0448181
rosa_laevigata	RLG00000025940
rosa_multiflora	Rmu_sc0013667.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426320
rosa_rugosa	Rorug02G0608500
rosa_samantha	Rh3AG008600 Rh3BG008100 Rh3CG008200 Rh3DG008800
rosa_wichuraiana	Rw3G000680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
AatII	GACGTC	1 cut(s)	162
AbsI	CCTCGAGG	1 cut(s)	560
AccB7I	CCANNNNNTGG	1 cut(s)	57
AciI	CCGC	4 cut(s)	5, 8, 11, 29
AclWI	GGATC	4 cut(s)	269, 539, 702, 719
AcsI	RAATTY	2 cut(s)	32, 266
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	2 cut(s)	461, 726
AfiI	CCNNNNNNNGG	1 cut(s)	57
AflII	CTTAAG	1 cut(s)	347
AflIII	ACRYGT	1 cut(s)	54
AgsI	TTSAA	3 cut(s)	272, 404, 587
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	5 cut(s)	139, 298, 397, 416, 487
AluI	AGCT	5 cut(s)	139, 298, 397, 416, 487
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	1 cut(s)	724
AlwI	GGATC	4 cut(s)	269, 539, 702, 719
Ama87I	CYCGRG	2 cut(s)	82, 560
AoxI	GGCC	3 cut(s)	78, 204, 617
ApeKI	GCWGC	3 cut(s)	102, 105, 413
ApoI	RAATTY	2 cut(s)	32, 266
AspS9I	GGNCC	1 cut(s)	78
AsuHPI	GGTGA	1 cut(s)	125
AvaI	CYCGRG	2 cut(s)	82, 560
BanII	GRGCYC	1 cut(s)	399
BbsI	GAAGAC	1 cut(s)	480
Bbv12I	GWGCWC	1 cut(s)	399
BbvI	GCAGC	3 cut(s)	114, 117, 425
BccI	CCATC	6 cut(s)	179, 247, 314, 377, 461, 646
BcgI	CGANNNNNNTGC	2 cut(s)	416, 450
BciT130I	CCWGG	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	724
BfaI	CTAG	3 cut(s)	236, 303, 707
BfmI	CTRYAG	1 cut(s)	639
BfrI	CTTAAG	1 cut(s)	347
BglII	AGATCT	1 cut(s)	703
BisI	GCNGC	6 cut(s)	6, 9, 12, 103, 106, 414
BlsI	GCNGC	6 cut(s)	7, 10, 13, 104, 107, 415
Bme1390I	CCNGG	1 cut(s)	194
BmeT110I	CYCGRG	2 cut(s)	82, 560
BmgT120I	GGNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	480
Bpu10I	CCTNAGC	1 cut(s)	690
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	2 cut(s)	81, 577
Bsc4I	CCNNNNNNNGG	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	2 cut(s)	81, 577
BseGI	GGATG	1 cut(s)	657
BseLI	CCNNNNNNNGG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	714
BseRI	GAGGAG	3 cut(s)	140, 305, 308
BseXI	GCAGC	3 cut(s)	114, 117, 425
BseYI	CCCAGC	1 cut(s)	527
BshFI	GGCC	3 cut(s)	80, 206, 619
BsiHKAI	GWGCWC	1 cut(s)	399
BsiHKCI	CYCGRG	2 cut(s)	82, 560
BsiSI	CCGG	1 cut(s)	203
BslFI	GGGAC	1 cut(s)	585
BslI	CCNNNNNNNGG	1 cut(s)	57
BsmAI	GTCTC	1 cut(s)	724
BsmBI	CGTCTC	1 cut(s)	724
BsmFI	GGGAC	1 cut(s)	585
BsmI	GAATGC	2 cut(s)	222, 679
BsnI	GGCC	3 cut(s)	80, 206, 619
BsoBI	CYCGRG	2 cut(s)	82, 560
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp143I	GATC	5 cut(s)	261, 544, 694, 703, 711
BspACI	CCGC	4 cut(s)	5, 8, 11, 29
BspANI	GGCC	3 cut(s)	80, 206, 619
BspCNI	CTCAG	1 cut(s)	713
BspPI	GGATC	4 cut(s)	269, 539, 702, 719
BspTI	CTTAAG	1 cut(s)	347
BssECI	CCNNGG	2 cut(s)	81, 577
BssMI	GATC	5 cut(s)	261, 544, 694, 703, 711
BssNI	GRCGYC	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	599
Bst6I	CTCTTC	2 cut(s)	158, 527
BstACI	GRCGYC	1 cut(s)	159
BstAFI	CTTAAG	1 cut(s)	347
BstC8I	GCNNGC	4 cut(s)	245, 300, 389, 687
BstDEI	CTNAG	3 cut(s)	379, 690, 700
BstF5I	GGATG	1 cut(s)	657
BstKTI	GATC	5 cut(s)	264, 547, 697, 706, 714
BstMAI	GTCTC	1 cut(s)	724
BstMBI	GATC	5 cut(s)	261, 544, 694, 703, 711
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 99, 226
BstNI	CCWGG	1 cut(s)	194
BstNSI	RCATGY	2 cut(s)	58, 391
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	1 cut(s)	639
BstV1I	GCAGC	3 cut(s)	114, 117, 425
BstV2I	GAAGAC	1 cut(s)	480
BstX2I	RGATCY	2 cut(s)	694, 703
BstYI	RGATCY	2 cut(s)	694, 703
BsuRI	GGCC	3 cut(s)	80, 206, 619
BtgZI	GCGATG	1 cut(s)	29
BtsCI	GGATG	1 cut(s)	657
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	1 cut(s)	115
Cac8I	GCNNGC	4 cut(s)	245, 300, 389, 687
Cfr13I	GGNCC	1 cut(s)	78
Csp6I	GTAC	2 cut(s)	460, 725
CviAII	CATG	6 cut(s)	55, 163, 358, 388, 434, 504
CviQI	GTAC	2 cut(s)	460, 725
DdeI	CTNAG	3 cut(s)	379, 690, 700
DpnI	GATC	5 cut(s)	263, 546, 696, 705, 713
DpnII	GATC	5 cut(s)	261, 544, 694, 703, 711
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
Eam1104I	CTCTTC	2 cut(s)	158, 527
EarI	CTCTTC	2 cut(s)	158, 527
EciI	GGCGGA	1 cut(s)	44
Ecl136II	GAGCTC	1 cut(s)	397
Eco24I	GRGCYC	1 cut(s)	399
Eco53kI	GAGCTC	1 cut(s)	397
Eco88I	CYCGRG	2 cut(s)	82, 560
EcoICRI	GAGCTC	1 cut(s)	397
EcoRI	GAATTC	1 cut(s)	32
EcoRII	CCWGG	1 cut(s)	192
EcoT38I	GRGCYC	1 cut(s)	399
Esp3I	CGTCTC	1 cut(s)	724
FaeI	CATG	6 cut(s)	58, 166, 361, 391, 437, 507
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FaqI	GGGAC	1 cut(s)	585
FatI	CATG	6 cut(s)	54, 162, 357, 387, 433, 503
Fnu4HI	GCNGC	6 cut(s)	6, 9, 12, 103, 106, 414
FokI	GGATG	1 cut(s)	664
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	6 cut(s)	6, 9, 12, 103, 106, 414
FspBI	CTAG	3 cut(s)	236, 303, 707
GluI	GCNGC	6 cut(s)	6, 9, 12, 103, 106, 414
GsaI	CCCAGC	1 cut(s)	531
HaeIII	GGCC	3 cut(s)	80, 206, 619
HapII	CCGG	1 cut(s)	203
Hin1I	GRCGYC	1 cut(s)	159
Hin1II	CATG	6 cut(s)	58, 166, 361, 391, 437, 507
HindIII	AAGCTT	2 cut(s)	137, 485
HinfI	GANTC	4 cut(s)	67, 145, 430, 680
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	1 cut(s)	125
Hpy188I	TCNGA	6 cut(s)	45, 129, 144, 215, 581, 703
Hpy188III	TCNNGA	3 cut(s)	259, 427, 548
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	3 cut(s)	217, 335, 410
HpyCH4III	ACNGT	1 cut(s)	599
HpyCH4IV	ACGT	5 cut(s)	159, 198, 509, 627, 717
HpyCH4V	TGCA	5 cut(s)	19, 243, 357, 391, 677
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 99, 226
HpyF3I	CTNAG	3 cut(s)	379, 690, 700
HpySE526I	ACGT	5 cut(s)	159, 198, 509, 627, 717
Hsp92I	GRCGYC	1 cut(s)	159
Hsp92II	CATG	6 cut(s)	58, 166, 361, 391, 437, 507
Kzo9I	GATC	5 cut(s)	261, 544, 694, 703, 711
LmnI	GCTCC	3 cut(s)	295, 402, 521
Lsp1109I	GCAGC	3 cut(s)	114, 117, 425
LweI	GCATC	1 cut(s)	6
MaeI	CTAG	3 cut(s)	236, 303, 707
MaeII	ACGT	5 cut(s)	159, 198, 509, 627, 717
MaeIII	GTNAC	2 cut(s)	179, 368
MalI	GATC	5 cut(s)	263, 546, 696, 705, 713
MboI	GATC	5 cut(s)	261, 544, 694, 703, 711
MboII	GAAGA	6 cut(s)	73, 76, 145, 202, 485, 544
MflI	RGATCY	2 cut(s)	694, 703
MhlI	GDGCHC	1 cut(s)	399
MluCI	AATT	3 cut(s)	32, 266, 731
MnlI	CCTC	9 cut(s)	91, 161, 283, 286, 318, 354, 556, 569, 587
MseI	TTAA	2 cut(s)	348, 482
MspA1I	CMGCKG	1 cut(s)	416
MspCI	CTTAAG	1 cut(s)	347
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	194
Mva1269I	GAATGC	2 cut(s)	222, 679
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	3 cut(s)	11, 99, 226
NdeII	GATC	5 cut(s)	261, 544, 694, 703, 711
NlaIII	CATG	6 cut(s)	58, 166, 361, 391, 437, 507
NmuCI	GTSAC	1 cut(s)	179
NspI	RCATGY	2 cut(s)	58, 391
PaeI	GCATGC	1 cut(s)	391
PaeR7I	CTCGAG	1 cut(s)	560
PciI	ACATGT	1 cut(s)	54
PctI	GAATGC	2 cut(s)	222, 679
PfeI	GAWTC	4 cut(s)	67, 145, 430, 680
PflMI	CCANNNNNTGG	1 cut(s)	57
PkrI	GCNGC	6 cut(s)	7, 10, 13, 104, 107, 415
PscI	ACATGT	1 cut(s)	54
Psp124BI	GAGCTC	1 cut(s)	399
Psp6I	CCWGG	1 cut(s)	192
PspFI	CCCAGC	1 cut(s)	527
PspGI	CCWGG	1 cut(s)	192
PspPI	GGNCC	1 cut(s)	78
PspXI	VCTCGAGB	1 cut(s)	560
PsuI	RGATCY	2 cut(s)	694, 703
PvuII	CAGCTG	1 cut(s)	416
RsaI	GTAC	2 cut(s)	461, 726
RsaNI	GTAC	2 cut(s)	460, 725
SacI	GAGCTC	1 cut(s)	399
SaqAI	TTAA	2 cut(s)	348, 482
SatI	GCNGC	6 cut(s)	6, 9, 12, 103, 106, 414
Sau3AI	GATC	5 cut(s)	261, 544, 694, 703, 711
Sau96I	GGNCC	1 cut(s)	78
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	399
SfaNI	GCATC	1 cut(s)	6
SfcI	CTRYAG	1 cut(s)	639
Sfr274I	CTCGAG	1 cut(s)	560
SlaI	CTCGAG	1 cut(s)	560
SmlI	CTYRAG	2 cut(s)	347, 560
SmoI	CTYRAG	2 cut(s)	347, 560
SphI	GCATGC	1 cut(s)	391
Sse9I	AATT	3 cut(s)	32, 266, 731
SsiI	CCGC	4 cut(s)	5, 8, 11, 29
SspMI	CTAG	3 cut(s)	236, 303, 707
SstI	GAGCTC	1 cut(s)	399
StyD4I	CCNGG	1 cut(s)	192
TaaI	ACNGT	1 cut(s)	599
TaiI	ACGT	5 cut(s)	162, 201, 512, 630, 720
TaqI	TCGA	5 cut(s)	156, 264, 426, 471, 561
TasI	AATT	3 cut(s)	32, 266, 731
TauI	GCSGC	3 cut(s)	8, 11, 14
TfiI	GAWTC	4 cut(s)	67, 145, 430, 680
Tru1I	TTAA	2 cut(s)	348, 482
Tru9I	TTAA	2 cut(s)	348, 482
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	3 cut(s)	102, 105, 413
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	5 cut(s)	25, 132, 239, 422, 595
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	115
Van91I	CCANNNNNTGG	1 cut(s)	57
Vha464I	CTTAAG	1 cut(s)	347
XapI	RAATTY	2 cut(s)	32, 266
XceI	RCATGY	2 cut(s)	58, 391
XhoI	CTCGAG	1 cut(s)	560
XspI	CTAG	3 cut(s)	236, 303, 707
ZraI	GACGTC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.