Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005781

Physical Location & Seq

Genomic Coordinates Reverse (-)

22553829 .. 22556422

Gene Structure 2594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g21350.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGCTCAGCTCTTGAAAGTACCCGCGATCCCCTTCCCTCGAAGTCTAAGACGCAACAGCAGCGGGACGAGCTCACTTCGATTTCACATAGCAACAACAATGGTTTTTACAAAACACAACGCCCGCAACACTACCAAGCCCTCCTCCTTTCGTAGTACCACTCGAAACCTTCCTATAATCCTCTTCGACATCATGGACACACTTGTTCGTGACCCCTTTTACCACGATGTCCCTGCCTTCTTCGGAATGTCTTTCGATGAATTAATCGAATGCAAGCACCCGACTGCATGGATCGAGTTCGAAAAGGGGATTACTGATGAGGTGGAGCTTGCTGCAAGAACATTCTTTAAGGATGGAAGGCCTCTAGATTTGGAAGGTCTGTTGGAGTTCCTCACTATTTTCCAGCCATGTCTGCGGAAGAGGAAGCCCGACCCAGAATTCTATTTGGAAGTTGTGAGCCATCTAAAAGTTGATCCGGGAAGCTGTATCTTTGTCGATGACAGGATAAGAAATGTAGAGGAGGCGAAGGAAGTTGGCATGATCGGTCTACATTTCAAAAATGCAGATTCGCTTCGTCAAGATCTTTCACTGATGGGGATTGATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0090711

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

HAD_2

Protein Analysis

203

Amino Acids

23.16

Weight (kDa)

6.31

Isoelectric Point (pI)

54.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79790 AT1G79790 AT1G79790
fragaria_vesca	FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710
malus_domestica	MD04G1242100.v1.1 MD12G1258900.v1.1
prunus_persica	Prupe.6G359400_v2.0.a1 Prupe.6G359400_v2.0.a1
pyrus_communis	pycom04g21350 pycom12g23740
rosa_chinensis	RchiOBHm_Chr3g0448181
rosa_laevigata	RLG00000025940
rosa_multiflora	Rmu_sc0013667.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426320
rosa_rugosa	Rorug02G0608500
rosa_samantha	Rh3AG008600 Rh3BG008100 Rh3CG008200 Rh3DG008800
rosa_wichuraiana	Rw3G000680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	547
AccII	CGCG	1 cut(s)	26
AciI	CCGC	4 cut(s)	24, 63, 124, 415
AclWI	GGATC	3 cut(s)	22, 299, 467
AcsI	RAATTY	1 cut(s)	437
AfaI	GTAC	2 cut(s)	21, 157
AgsI	TTSAA	2 cut(s)	16, 556
AluBI	AGCT	4 cut(s)	10, 72, 328, 483
AluI	AGCT	4 cut(s)	10, 72, 328, 483
Alw21I	GWGCWC	1 cut(s)	74
AlwI	GGATC	3 cut(s)	22, 299, 467
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	2 cut(s)	60, 332
ApoI	RAATTY	1 cut(s)	437
AseI	ATTAAT	1 cut(s)	263
AsuC2I	CCSGG	1 cut(s)	477
AsuII	TTCGAA	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	74
BbvI	GCAGC	2 cut(s)	72, 319
BccI	CCATC	3 cut(s)	347, 468, 586
BcgI	CGANNNNNNTGC	2 cut(s)	215, 249
BcnI	CCSGG	1 cut(s)	477
BfaI	CTAG	1 cut(s)	365
BglII	AGATCT	1 cut(s)	580
BisI	GCNGC	2 cut(s)	61, 333
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	2 cut(s)	62, 334
Bme1390I	CCNGG	1 cut(s)	477
BmrFI	CCNGG	1 cut(s)	477
Bpu1102I	GCTNAGC	1 cut(s)	6
Bpu14I	TTCGAA	1 cut(s)	300
BpuMI	CCSGG	1 cut(s)	477
BseGI	GGATG	1 cut(s)	358
BseMII	CTCAG	1 cut(s)	20
BseRI	GAGGAG	2 cut(s)	133, 533
BseXI	GCAGC	2 cut(s)	72, 319
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	1 cut(s)	361
BsiHKAI	GWGCWC	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	476
BslFI	GGGAC	2 cut(s)	79, 215
BsmFI	GGGAC	2 cut(s)	79, 215
BsmI	GAATGC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	361
Bsp119I	TTCGAA	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	5 cut(s)	27, 291, 472, 540, 580
Bsp1720I	GCTNAGC	1 cut(s)	6
BspACI	CCGC	4 cut(s)	24, 63, 124, 415
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	26
BspPI	GGATC	3 cut(s)	22, 299, 467
BspT104I	TTCGAA	1 cut(s)	300
BssMI	GATC	5 cut(s)	27, 291, 472, 540, 580
Bst6I	CTCTTC	2 cut(s)	188, 413
BstBI	TTCGAA	1 cut(s)	300
BstC8I	GCNNGC	3 cut(s)	124, 275, 330
BstDEI	CTNAG	2 cut(s)	6, 47
BstF5I	GGATG	1 cut(s)	358
BstFNI	CGCG	1 cut(s)	26
BstKTI	GATC	5 cut(s)	30, 294, 475, 543, 583
BstMBI	GATC	5 cut(s)	27, 291, 472, 540, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 69, 412
BstSCI	CCNGG	1 cut(s)	475
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	72, 319
BstX2I	RGATCY	1 cut(s)	580
BstYI	RGATCY	1 cut(s)	580
BsuRI	GGCC	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	358
BtsIMutI	CAGTG	1 cut(s)	587
Cac8I	GCNNGC	3 cut(s)	124, 275, 330
CseI	GACGC	1 cut(s)	60
Csp6I	GTAC	2 cut(s)	20, 156
CviAII	CATG	4 cut(s)	193, 288, 408, 538
CviQI	GTAC	2 cut(s)	20, 156
DdeI	CTNAG	2 cut(s)	6, 47
DpnI	GATC	5 cut(s)	29, 293, 474, 542, 582
DpnII	GATC	5 cut(s)	27, 291, 472, 540, 580
Eam1104I	CTCTTC	2 cut(s)	188, 413
EarI	CTCTTC	2 cut(s)	188, 413
Ecl136II	GAGCTC	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	74
Eco53kI	GAGCTC	1 cut(s)	72
EcoICRI	GAGCTC	1 cut(s)	72
EcoRI	GAATTC	1 cut(s)	437
EcoT38I	GRGCYC	1 cut(s)	74
FaeI	CATG	4 cut(s)	196, 291, 411, 541
FaiI	YATR	6 cut(s)	89, 176, 194, 289, 409, 539
FaqI	GGGAC	2 cut(s)	79, 215
FatI	CATG	4 cut(s)	192, 287, 407, 537
FauI	CCCGC	3 cut(s)	31, 56, 131
FblI	GTMKAC	1 cut(s)	547
Fnu4HI	GCNGC	2 cut(s)	61, 333
FokI	GGATG	1 cut(s)	365
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	2 cut(s)	61, 333
FspBI	CTAG	1 cut(s)	365
GluI	GCNGC	2 cut(s)	61, 333
HaeIII	GGCC	1 cut(s)	361
HapII	CCGG	1 cut(s)	476
HgaI	GACGC	1 cut(s)	60
Hin1II	CATG	4 cut(s)	196, 291, 411, 541
HinfI	GANTC	1 cut(s)	566
HpaII	CCGG	1 cut(s)	476
Hpy166II	GTNNAC	1 cut(s)	548
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	4 cut(s)	13, 209, 365, 578
Hpy8I	GTNNAC	1 cut(s)	548
HpyAV	CCTTC	6 cut(s)	43, 179, 247, 351, 368, 520
HpyCH4V	TGCA	4 cut(s)	273, 287, 335, 563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 69, 412
HpyF3I	CTNAG	2 cut(s)	6, 47
Hsp92II	CATG	4 cut(s)	196, 291, 411, 541
Kzo9I	GATC	5 cut(s)	27, 291, 472, 540, 580
LmnI	GCTCC	1 cut(s)	325
LpnPI	CCDG	5 cut(s)	246, 416, 447, 487, 489
Lsp1109I	GCAGC	2 cut(s)	72, 319
MaeI	CTAG	1 cut(s)	365
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	5 cut(s)	29, 293, 474, 542, 582
MboI	GATC	5 cut(s)	27, 291, 472, 540, 580
MboII	GAAGA	3 cut(s)	175, 232, 430
MflI	RGATCY	1 cut(s)	580
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	2 cut(s)	260, 437
MmeI	TCCRAC	1 cut(s)	363
MseI	TTAA	3 cut(s)	263, 348, 607
MspA1I	CMGCKG	1 cut(s)	63
MspI	CCGG	1 cut(s)	476
MspR9I	CCNGG	1 cut(s)	477
Mva1269I	GAATGC	1 cut(s)	275
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	3 cut(s)	60, 69, 412
NciI	CCSGG	1 cut(s)	477
NdeII	GATC	5 cut(s)	27, 291, 472, 540, 580
NlaIII	CATG	4 cut(s)	196, 291, 411, 541
NmuCI	GTSAC	1 cut(s)	209
NspV	TTCGAA	1 cut(s)	300
PceI	AGGCCT	1 cut(s)	361
PctI	GAATGC	1 cut(s)	275
PfeI	GAWTC	1 cut(s)	566
PfoI	TCCNGGA	1 cut(s)	475
PkrI	GCNGC	2 cut(s)	62, 334
PshBI	ATTAAT	1 cut(s)	263
Psp124BI	GAGCTC	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	580
RsaI	GTAC	2 cut(s)	21, 157
RsaNI	GTAC	2 cut(s)	20, 156
SacI	GAGCTC	1 cut(s)	74
SaqAI	TTAA	3 cut(s)	263, 348, 607
SatI	GCNGC	2 cut(s)	61, 333
Sau3AI	GATC	5 cut(s)	27, 291, 472, 540, 580
ScrFI	CCNGG	1 cut(s)	477
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	7 cut(s)	12, 74, 171, 324, 330, 379, 485
SfuI	TTCGAA	1 cut(s)	300
Sse9I	AATT	2 cut(s)	260, 437
SseBI	AGGCCT	1 cut(s)	361
SsiI	CCGC	4 cut(s)	24, 63, 124, 415
SspMI	CTAG	1 cut(s)	365
SstI	GAGCTC	1 cut(s)	74
StuI	AGGCCT	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	475
TaqI	TCGA	9 cut(s)	40, 79, 163, 186, 255, 267, 294, 300, 495
TaqII	GACCGA	1 cut(s)	533
TasI	AATT	2 cut(s)	260, 437
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	3 cut(s)	263, 348, 607
Tru9I	TTAA	3 cut(s)	263, 348, 607
TscAI	CASTG	1 cut(s)	594
TseFI	GTSAC	1 cut(s)	209
TseI	GCWGC	2 cut(s)	60, 332
Tsp45I	GTSAC	1 cut(s)	209
TspDTI	ATGAA	1 cut(s)	273
TspRI	CASTG	1 cut(s)	594
VspI	ATTAAT	1 cut(s)	263
XapI	RAATTY	1 cut(s)	437
XbaI	TCTAGA	1 cut(s)	364
XmiI	GTMKAC	1 cut(s)	547
XspI	CTAG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.