Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013667.1

Orthogroup ID

OG0005781

Physical Location & Seq

Genomic Coordinates Reverse (-)

17818 .. 20153

Gene Structure 2336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013667.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atggctgtgtttttgagactacccgcgatccctttccctctaagaaactcgtcacttcattcctcaagaggaataaaaatggctctaaaaacccagaagaacaccaccgtctctttctctactgctactactcgaaagctgcccatactgctctttgacatcatggacaccattgttcgtgaccctttttaccatgacatccctgctttcttcagaatgccattcgaagaactaatagaatcgaagcacccaactgcatggattgagtttgaaaaggggttgattgatgaggtggaactagcaagaaaattctttaaggatggaaggccttttgatttggaaggcctgaaaaattgcatgagagaaggatattcctatattgaaggtgttgaagaattgcttcatgtattaaaacataacaactatgagatgcatgctttcacaaactatccgatctggtacgagatgattgaggacaaattaaacatctccaagtatttatcttggacattttgttcttgtataaatgggaagaggaagcctgatcctgaattctttttggaagttgtgagacatctcaaagttgatccagcaagctgtctattcgtcgacgataggaagagaaatgtagaggctgcaaaggaagttggcataattggtctacatttcaaaaacgtagatgtgcttcgtcaagatctttcctcgatggggattgacatttcaacagatgaaatcaaccttgcacaagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0090711

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

HAD_2

Protein Analysis

250

Amino Acids

29.08

Weight (kDa)

5.94

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79790 AT1G79790 AT1G79790
fragaria_vesca	FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710
malus_domestica	MD04G1242100.v1.1 MD12G1258900.v1.1
prunus_persica	Prupe.6G359400_v2.0.a1 Prupe.6G359400_v2.0.a1
pyrus_communis	pycom04g21350 pycom12g23740
rosa_chinensis	RchiOBHm_Chr3g0448181
rosa_laevigata	RLG00000025940
rosa_multiflora	Rmu_sc0013667.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426320
rosa_rugosa	Rorug02G0608500
rosa_samantha	Rh3AG008600 Rh3BG008100 Rh3CG008200 Rh3DG008800
rosa_wichuraiana	Rw3G000680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	609, 661
AccII	CGCG	1 cut(s)	26
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	3 cut(s)	22, 539, 581
AcsI	RAATTY	2 cut(s)	308, 551
AcuI	CTGAAG	1 cut(s)	196
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	1 cut(s)	708
AgsI	TTSAA	5 cut(s)	272, 383, 392, 670, 723
AloI	GAACNNNNNNTCC	2 cut(s)	499, 531
AluBI	AGCT	2 cut(s)	139, 597
AluI	AGCT	2 cut(s)	139, 597
Alw26I	GTCTC	3 cut(s)	10, 115, 565
AlwI	GGATC	3 cut(s)	22, 539, 581
AoxI	GGCC	2 cut(s)	326, 343
ApeKI	GCWGC	2 cut(s)	139, 635
ApoI	RAATTY	2 cut(s)	308, 551
Asp700I	GAANNNNTTC	1 cut(s)	399
AsuII	TTCGAA	1 cut(s)	225
BarI	GAAGNNNNNNTAC	2 cut(s)	669, 701
BbvI	GCAGC	2 cut(s)	126, 622
BccI	CCATC	2 cut(s)	314, 700
BcoDI	GTCTC	3 cut(s)	10, 115, 565
BfaI	CTAG	1 cut(s)	299
BglII	AGATCT	1 cut(s)	694
BisI	GCNGC	2 cut(s)	140, 636
BlsI	GCNGC	2 cut(s)	141, 637
BmsI	GCATC	1 cut(s)	420
Bpu14I	TTCGAA	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	708
BseGI	GGATG	2 cut(s)	198, 325
BseLI	CCNNNNNNNGG	1 cut(s)	708
BseXI	GCAGC	2 cut(s)	126, 622
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	2 cut(s)	328, 345
BslI	CCNNNNNNNGG	1 cut(s)	708
BsmAI	GTCTC	3 cut(s)	10, 115, 565
BsmBI	CGTCTC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	222
BsnI	GGCC	2 cut(s)	328, 345
Bsp119I	TTCGAA	1 cut(s)	225
Bsp143I	GATC	5 cut(s)	27, 453, 544, 586, 694
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	2 cut(s)	328, 345
BspFNI	CGCG	1 cut(s)	26
BspPI	GGATC	3 cut(s)	22, 539, 581
BspT104I	TTCGAA	1 cut(s)	225
BssMI	GATC	5 cut(s)	27, 453, 544, 586, 694
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	2 cut(s)	527, 614
BstBI	TTCGAA	1 cut(s)	225
BstC8I	GCNNGC	2 cut(s)	435, 595
BstDEI	CTNAG	1 cut(s)	41
BstF5I	GGATG	2 cut(s)	198, 325
BstFNI	CGCG	1 cut(s)	26
BstKTI	GATC	5 cut(s)	30, 456, 547, 589, 697
BstMAI	GTCTC	3 cut(s)	10, 115, 565
BstMBI	GATC	5 cut(s)	27, 453, 544, 586, 694
BstMWI	GCNNNNNNNGC	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	437
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	126, 622
BstX2I	RGATCY	1 cut(s)	694
BstXI	CCANNNNNNTGG	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	694
BsuRI	GGCC	2 cut(s)	328, 345
BtsCI	GGATG	2 cut(s)	198, 325
Cac8I	GCNNGC	2 cut(s)	435, 595
Csp6I	GTAC	1 cut(s)	460
CviAII	CATG	6 cut(s)	163, 194, 258, 358, 404, 434
CviJI	RGCY	8 cut(s)	5, 83, 139, 328, 345, 541, 597, 635
CviKI_1	RGCY	8 cut(s)	5, 83, 139, 328, 345, 541, 597, 635
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	5 cut(s)	29, 455, 546, 588, 696
DpnII	GATC	5 cut(s)	27, 453, 544, 586, 694
Eam1104I	CTCTTC	2 cut(s)	527, 614
EarI	CTCTTC	2 cut(s)	527, 614
Eco147I	AGGCCT	2 cut(s)	328, 345
Eco57I	CTGAAG	1 cut(s)	196
EcoRI	GAATTC	1 cut(s)	551
EcoT22I	ATGCAT	1 cut(s)	435
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	6 cut(s)	166, 197, 261, 361, 407, 437
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FatI	CATG	6 cut(s)	162, 193, 257, 357, 403, 433
FauI	CCCGC	1 cut(s)	31
FblI	GTMKAC	2 cut(s)	609, 661
Fnu4HI	GCNGC	2 cut(s)	140, 636
FokI	GGATG	2 cut(s)	185, 332
Fsp4HI	GCNGC	2 cut(s)	140, 636
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	2 cut(s)	140, 636
HaeIII	GGCC	2 cut(s)	328, 345
Hin1II	CATG	6 cut(s)	166, 197, 261, 361, 407, 437
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HinfI	GANTC	1 cut(s)	239
Hpy166II	GTNNAC	2 cut(s)	610, 662
Hpy188I	TCNGA	2 cut(s)	215, 453
Hpy188III	TCNNGA	4 cut(s)	66, 179, 548, 692
Hpy8I	GTNNAC	2 cut(s)	610, 662
Hpy99I	CGWCG	2 cut(s)	611, 614
HpyAV	CCTTC	4 cut(s)	318, 335, 359, 377
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	675
HpyCH4V	TGCA	5 cut(s)	257, 357, 433, 638, 743
HpyF10VI	GCNNNNNNNGC	1 cut(s)	148
HpyF3I	CTNAG	1 cut(s)	41
HpySE526I	ACGT	1 cut(s)	675
Hsp92II	CATG	6 cut(s)	166, 197, 261, 361, 407, 437
Kzo9I	GATC	5 cut(s)	27, 453, 544, 586, 694
LpnPI	CCDG	7 cut(s)	107, 216, 359, 442, 555, 561, 603
Lsp1109I	GCAGC	2 cut(s)	126, 622
LweI	GCATC	1 cut(s)	420
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	1 cut(s)	675
MaeIII	GTNAC	2 cut(s)	51, 179
MalI	GATC	5 cut(s)	29, 455, 546, 588, 696
MboI	GATC	5 cut(s)	27, 453, 544, 586, 694
MboII	GAAGA	6 cut(s)	109, 202, 239, 404, 544, 631
MflI	RGATCY	1 cut(s)	694
MluCI	AATT	6 cut(s)	308, 352, 395, 479, 551, 654
MnlI	CCTC	8 cut(s)	48, 62, 73, 283, 466, 528, 625, 712
Mph1103I	ATGCAT	1 cut(s)	435
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	3 cut(s)	315, 410, 482
Mva1269I	GAATGC	1 cut(s)	222
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	148
NdeII	GATC	5 cut(s)	27, 453, 544, 586, 694
NlaIII	CATG	6 cut(s)	166, 197, 261, 361, 407, 437
NmuCI	GTSAC	2 cut(s)	51, 179
NsiI	ATGCAT	1 cut(s)	435
NspI	RCATGY	1 cut(s)	437
NspV	TTCGAA	1 cut(s)	225
PaeI	GCATGC	1 cut(s)	437
PceI	AGGCCT	2 cut(s)	328, 345
PctI	GAATGC	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	1 cut(s)	239
PkrI	GCNGC	2 cut(s)	141, 637
PsuI	RGATCY	1 cut(s)	694
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
SalI	GTCGAC	1 cut(s)	608
SaqAI	TTAA	3 cut(s)	315, 410, 482
SatI	GCNGC	2 cut(s)	140, 636
Sau3AI	GATC	5 cut(s)	27, 453, 544, 586, 694
SetI	ASST	6 cut(s)	141, 294, 388, 599, 678, 741
SfaNI	GCATC	1 cut(s)	420
SfuI	TTCGAA	1 cut(s)	225
SgrDI	CGTCGACG	1 cut(s)	608
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
SphI	GCATGC	1 cut(s)	437
Sse9I	AATT	6 cut(s)	308, 352, 395, 479, 551, 654
SseBI	AGGCCT	2 cut(s)	328, 345
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	299
StuI	AGGCCT	2 cut(s)	328, 345
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	678
TaqI	TCGA	5 cut(s)	133, 225, 242, 609, 704
TasI	AATT	6 cut(s)	308, 352, 395, 479, 551, 654
TfiI	GAWTC	1 cut(s)	239
Tru1I	TTAA	3 cut(s)	315, 410, 482
Tru9I	TTAA	3 cut(s)	315, 410, 482
TseFI	GTSAC	2 cut(s)	51, 179
TseI	GCWGC	2 cut(s)	139, 635
Tsp45I	GTSAC	2 cut(s)	51, 179
TspDTI	ATGAA	3 cut(s)	47, 392, 744
XapI	RAATTY	2 cut(s)	308, 551
XceI	RCATGY	1 cut(s)	437
XmiI	GTMKAC	2 cut(s)	609, 661
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	1 cut(s)	299
Zsp2I	ATGCAT	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.