Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005781

Physical Location & Seq

Genomic Coordinates Forward (+)

553103 .. 555508

Gene Structure 2406 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG008800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGATTTGGGTAATGCCATTCGAAGAACTAATAGAATCGAAGCACCCAACTGCATGGATTGAGTTTGAAAAGGGGTTGATTGATGAGGTGGAACTAGCAAGAAAATTCTTTAAGGATGGAAGGCCTTTTGATTTGGAAGGCCTGAAAAATTGCATGAGAGAAGGATATTCCTATATTGAAGGTGTTGAAGAATTGCTTCATGTATTAAAACATAACAACTATGAGATGCATGCTTTCACAAACTATCCCATCTGGTACGAGATGATTGAGGACAAATTAAACATCTCCAAGTATTTATCTTGGACATTTTGTTCTTGTATAAATGGGAAGAGGAAGCCTGATCCTGAATTCTTTTTGGACGTTGTGAGACATCTCAAAGTTGATCCAGCAAGCTGTCTATTCGTCGATGATAGGAAGAGAAATGTAGAGGCTGCAAAGGAAGTTGGCATAATTGGTCTACATTTCAAAAACGTAGATGTGCTTCGTCAAGATCTTTCCTTGAAGGGGATTGACATTTCAACAGATGAAACCAACCTTGCACAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0090711

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

HAD_2

Protein Analysis

182

Amino Acids

21.38

Weight (kDa)

5.13

Isoelectric Point (pI)

39.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	54 - 150	4.7e-11	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	59 - 149	9.4e-14	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79790 AT1G79790 AT1G79790
fragaria_vesca	FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710
malus_domestica	MD04G1242100.v1.1 MD12G1258900.v1.1
prunus_persica	Prupe.6G359400_v2.0.a1 Prupe.6G359400_v2.0.a1
pyrus_communis	pycom04g21350 pycom12g23740
rosa_chinensis	RchiOBHm_Chr3g0448181
rosa_laevigata	RLG00000025940
rosa_multiflora	Rmu_sc0013667.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426320
rosa_rugosa	Rorug02G0608500
rosa_samantha	Rh3AG008600 Rh3BG008100 Rh3CG008200 Rh3DG008800
rosa_wichuraiana	Rw3G000680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	457
AclWI	GGATC	2 cut(s)	335, 377
AcsI	RAATTY	2 cut(s)	104, 347
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	504
AgsI	TTSAA	6 cut(s)	68, 179, 188, 466, 502, 519
AloI	GAACNNNNNNTCC	2 cut(s)	295, 327
AluBI	AGCT	1 cut(s)	393
AluI	AGCT	1 cut(s)	393
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	2 cut(s)	335, 377
AoxI	GGCC	2 cut(s)	122, 139
ApeKI	GCWGC	1 cut(s)	431
ApoI	RAATTY	2 cut(s)	104, 347
Asp700I	GAANNNNTTC	1 cut(s)	195
AsuII	TTCGAA	1 cut(s)	21
BarI	GAAGNNNNNNTAC	2 cut(s)	465, 497
BbvI	GCAGC	1 cut(s)	418
BccI	CCATC	2 cut(s)	110, 257
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	1 cut(s)	95
BglII	AGATCT	1 cut(s)	490
BisI	GCNGC	1 cut(s)	432
BlsI	GCNGC	1 cut(s)	433
BmsI	GCATC	1 cut(s)	216
Bpu14I	TTCGAA	1 cut(s)	21
Bsc4I	CCNNNNNNNGG	1 cut(s)	504
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	1 cut(s)	504
BseXI	GCAGC	1 cut(s)	418
BshFI	GGCC	2 cut(s)	124, 141
BslI	CCNNNNNNNGG	1 cut(s)	504
BsmAI	GTCTC	1 cut(s)	361
BsnI	GGCC	2 cut(s)	124, 141
Bsp119I	TTCGAA	1 cut(s)	21
Bsp143I	GATC	3 cut(s)	340, 382, 490
BspANI	GGCC	2 cut(s)	124, 141
BspPI	GGATC	2 cut(s)	335, 377
BspT104I	TTCGAA	1 cut(s)	21
BssMI	GATC	3 cut(s)	340, 382, 490
Bst6I	CTCTTC	2 cut(s)	323, 410
BstBI	TTCGAA	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	231, 391
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	3 cut(s)	343, 385, 493
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	3 cut(s)	340, 382, 490
BstNSI	RCATGY	1 cut(s)	233
BstV1I	GCAGC	1 cut(s)	418
BstX2I	RGATCY	1 cut(s)	490
BstXI	CCANNNNNNTGG	1 cut(s)	54
BstYI	RGATCY	1 cut(s)	490
BsuRI	GGCC	2 cut(s)	124, 141
BtsCI	GGATG	1 cut(s)	121
Cac8I	GCNNGC	2 cut(s)	231, 391
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	4 cut(s)	54, 154, 200, 230
CviJI	RGCY	5 cut(s)	124, 141, 337, 393, 431
CviKI_1	RGCY	5 cut(s)	124, 141, 337, 393, 431
CviQI	GTAC	1 cut(s)	256
DpnI	GATC	3 cut(s)	342, 384, 492
DpnII	GATC	3 cut(s)	340, 382, 490
Eam1104I	CTCTTC	2 cut(s)	323, 410
EarI	CTCTTC	2 cut(s)	323, 410
Eco147I	AGGCCT	2 cut(s)	124, 141
EcoRI	GAATTC	1 cut(s)	347
EcoT22I	ATGCAT	1 cut(s)	231
FaeI	CATG	4 cut(s)	57, 157, 203, 233
FaiI	YATR	9 cut(s)	55, 155, 174, 201, 213, 222, 231, 320, 449
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FatI	CATG	4 cut(s)	53, 153, 199, 229
FblI	GTMKAC	1 cut(s)	457
Fnu4HI	GCNGC	1 cut(s)	432
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	432
FspBI	CTAG	1 cut(s)	95
GluI	GCNGC	1 cut(s)	432
HaeIII	GGCC	2 cut(s)	124, 141
Hin1II	CATG	4 cut(s)	57, 157, 203, 233
HinfI	GANTC	1 cut(s)	35
Hpy166II	GTNNAC	1 cut(s)	458
Hpy188III	TCNNGA	2 cut(s)	344, 488
Hpy8I	GTNNAC	1 cut(s)	458
Hpy99I	CGWCG	1 cut(s)	407
HpyAV	CCTTC	5 cut(s)	114, 131, 155, 173, 496
HpyCH4IV	ACGT	2 cut(s)	360, 471
HpyCH4V	TGCA	5 cut(s)	53, 153, 229, 434, 539
HpySE526I	ACGT	2 cut(s)	360, 471
Hsp92II	CATG	4 cut(s)	57, 157, 203, 233
Kzo9I	GATC	3 cut(s)	340, 382, 490
LpnPI	CCDG	5 cut(s)	155, 238, 351, 357, 399
Lsp1109I	GCAGC	1 cut(s)	418
LweI	GCATC	1 cut(s)	216
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	2 cut(s)	360, 471
MalI	GATC	3 cut(s)	342, 384, 492
MboI	GATC	3 cut(s)	340, 382, 490
MboII	GAAGA	4 cut(s)	35, 200, 340, 427
MflI	RGATCY	1 cut(s)	490
MluCI	AATT	6 cut(s)	104, 148, 191, 275, 347, 450
MnlI	CCTC	4 cut(s)	79, 262, 324, 421
Mph1103I	ATGCAT	1 cut(s)	231
MroXI	GAANNNNTTC	1 cut(s)	195
MseI	TTAA	3 cut(s)	111, 206, 278
NdeII	GATC	3 cut(s)	340, 382, 490
NlaIII	CATG	4 cut(s)	57, 157, 203, 233
NsiI	ATGCAT	1 cut(s)	231
NspI	RCATGY	1 cut(s)	233
NspV	TTCGAA	1 cut(s)	21
PaeI	GCATGC	1 cut(s)	233
PceI	AGGCCT	2 cut(s)	124, 141
PdmI	GAANNNNTTC	1 cut(s)	195
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	433
PsuI	RGATCY	1 cut(s)	490
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	3 cut(s)	111, 206, 278
SatI	GCNGC	1 cut(s)	432
Sau3AI	GATC	3 cut(s)	340, 382, 490
SetI	ASST	6 cut(s)	90, 184, 363, 395, 474, 537
SfaNI	GCATC	1 cut(s)	216
SfuI	TTCGAA	1 cut(s)	21
SphI	GCATGC	1 cut(s)	233
Sse9I	AATT	6 cut(s)	104, 148, 191, 275, 347, 450
SseBI	AGGCCT	2 cut(s)	124, 141
SspMI	CTAG	1 cut(s)	95
StuI	AGGCCT	2 cut(s)	124, 141
TaiI	ACGT	2 cut(s)	363, 474
TaqI	TCGA	3 cut(s)	21, 38, 405
TasI	AATT	6 cut(s)	104, 148, 191, 275, 347, 450
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	3 cut(s)	111, 206, 278
Tru9I	TTAA	3 cut(s)	111, 206, 278
TseI	GCWGC	1 cut(s)	431
TspDTI	ATGAA	2 cut(s)	188, 540
XapI	RAATTY	2 cut(s)	104, 347
XceI	RCATGY	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	457
XmnI	GAANNNNTTC	1 cut(s)	195
XspI	CTAG	1 cut(s)	95
Zsp2I	ATGCAT	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.