Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0005781

Physical Location & Seq

Genomic Coordinates Reverse (-)

49336148 .. 49338491

Gene Structure 2344 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025940

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCTGTGTTTTTGAGACTACCCGCGATCCCTTTCCCTCTAAGAAACTCGTCACTTCATTCCTCAAGAGGAATTAAAATGGCTCTAAAAAGCCAGAAGAACACCAACGTCTCTTTCTCTACTACTACTACTACTCGAAAGCTGCCCATACTGCTCTTTGACATCATGGACACCATTGTTCGTGACCCTTTTTACCATGACATCCCTGCTTTCTTCAGAATGCCATTCGAAGAACTAATAGAATCGAAGCACCCAACTGCATGGATTGAGTTTGAAAAGGGGTTGATTGATGAGGTGGAACTAGCAAGAAAATTCTTTAAGGATGGAAGGCCTTTAGATTTGGAAGGCCTGAAAAATTGCATGAGAGAAGGATATTCCTATATTGAAGGTGTTGAAGAATTGCTTCATGTATTAAAACATAACAACTATGAGATGCATGCTTTCACAAACTATCCCATCTGGTATGAGATGATTGAGGACAAATTAAACATCTCCAAGTATTTATCTTGGACATTTTGTTCTTGTATAAATGGGAAGAGGAAGCCTGATCCTGAATTCTTTTTGGAAGTTGTGAGACATCTCAAAGTTGATCCAGCAAGCTGTCTATTCGTCGATGATAGGAAGAGAAATGTAGAGGCTGCAAAGGAAGTTGGCATAATTGGTCTACATTTCAAAAACGTAGATGCGCTTCGTCAAGATCTTTCCTTGGAGGGGATTGACATTTCAACAGATGAAACCAACCTTGCACAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0090711

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

HAD_2

Protein Analysis

252

Amino Acids

29.16

Weight (kDa)

5.81

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase	PF00702	124 - 218	8.3e-14	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	124 - 219	5.2e-11	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79790 AT1G79790 AT1G79790
fragaria_vesca	FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710
malus_domestica	MD04G1242100.v1.1 MD12G1258900.v1.1
prunus_persica	Prupe.6G359400_v2.0.a1 Prupe.6G359400_v2.0.a1
pyrus_communis	pycom04g21350 pycom12g23740
rosa_chinensis	RchiOBHm_Chr3g0448181
rosa_laevigata	RLG00000025940
rosa_multiflora	Rmu_sc0013667.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426320
rosa_rugosa	Rorug02G0608500
rosa_samantha	Rh3AG008600 Rh3BG008100 Rh3CG008200 Rh3DG008800
rosa_wichuraiana	Rw3G000680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	664
AccII	CGCG	1 cut(s)	26
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	3 cut(s)	22, 542, 584
AcsI	RAATTY	2 cut(s)	311, 554
AcuI	CTGAAG	1 cut(s)	199
AfiI	CCNNNNNNNGG	1 cut(s)	711
AgsI	TTSAA	5 cut(s)	275, 386, 395, 673, 726
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AloI	GAACNNNNNNTCC	2 cut(s)	502, 534
AluBI	AGCT	2 cut(s)	142, 600
AluI	AGCT	2 cut(s)	142, 600
Alw26I	GTCTC	3 cut(s)	10, 115, 568
AlwI	GGATC	3 cut(s)	22, 542, 584
AoxI	GGCC	2 cut(s)	329, 346
ApeKI	GCWGC	2 cut(s)	142, 638
ApoI	RAATTY	2 cut(s)	311, 554
Asp700I	GAANNNNTTC	1 cut(s)	402
AspLEI	GCGC	1 cut(s)	688
AsuII	TTCGAA	1 cut(s)	228
BarI	GAAGNNNNNNTAC	2 cut(s)	672, 704
BbvI	GCAGC	2 cut(s)	129, 625
BccI	CCATC	2 cut(s)	317, 464
BcoDI	GTCTC	3 cut(s)	10, 115, 568
BfaI	CTAG	1 cut(s)	302
BglII	AGATCT	1 cut(s)	697
BisI	GCNGC	2 cut(s)	143, 639
BlsI	GCNGC	2 cut(s)	144, 640
BmsI	GCATC	2 cut(s)	423, 673
Bpu14I	TTCGAA	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	49
BsaJI	CCNNGG	1 cut(s)	705
Bsc4I	CCNNNNNNNGG	1 cut(s)	711
BseDI	CCNNGG	1 cut(s)	705
BseGI	GGATG	2 cut(s)	201, 328
BseLI	CCNNNNNNNGG	1 cut(s)	711
BseXI	GCAGC	2 cut(s)	129, 625
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	2 cut(s)	331, 348
BslI	CCNNNNNNNGG	1 cut(s)	711
BsmAI	GTCTC	3 cut(s)	10, 115, 568
BsmBI	CGTCTC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	2 cut(s)	331, 348
Bsp119I	TTCGAA	1 cut(s)	228
Bsp143I	GATC	4 cut(s)	27, 547, 589, 697
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	2 cut(s)	331, 348
BspFNI	CGCG	1 cut(s)	26
BspPI	GGATC	3 cut(s)	22, 542, 584
BspT104I	TTCGAA	1 cut(s)	228
BssECI	CCNNGG	1 cut(s)	705
BssMI	GATC	4 cut(s)	27, 547, 589, 697
BssT1I	CCWWGG	1 cut(s)	705
Bst6I	CTCTTC	2 cut(s)	530, 617
BstBI	TTCGAA	1 cut(s)	228
BstC8I	GCNNGC	2 cut(s)	438, 598
BstDEI	CTNAG	1 cut(s)	41
BstF5I	GGATG	2 cut(s)	201, 328
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	688
BstKTI	GATC	4 cut(s)	30, 550, 592, 700
BstMAI	GTCTC	3 cut(s)	10, 115, 568
BstMBI	GATC	4 cut(s)	27, 547, 589, 697
BstMWI	GCNNNNNNNGC	1 cut(s)	151
BstNSI	RCATGY	1 cut(s)	440
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	129, 625
BstX2I	RGATCY	1 cut(s)	697
BstXI	CCANNNNNNTGG	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	697
BsuRI	GGCC	2 cut(s)	331, 348
BtsCI	GGATG	2 cut(s)	201, 328
Cac8I	GCNNGC	2 cut(s)	438, 598
CfoI	GCGC	1 cut(s)	688
CviAII	CATG	6 cut(s)	166, 197, 261, 361, 407, 437
CviJI	RGCY	9 cut(s)	5, 83, 93, 142, 331, 348, 544, 600, 638
CviKI_1	RGCY	9 cut(s)	5, 83, 93, 142, 331, 348, 544, 600, 638
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	4 cut(s)	29, 549, 591, 699
DpnII	GATC	4 cut(s)	27, 547, 589, 697
Eam1104I	CTCTTC	2 cut(s)	530, 617
EarI	CTCTTC	2 cut(s)	530, 617
Eco130I	CCWWGG	1 cut(s)	705
Eco147I	AGGCCT	2 cut(s)	331, 348
Eco57I	CTGAAG	1 cut(s)	199
EcoRI	GAATTC	1 cut(s)	554
EcoT14I	CCWWGG	1 cut(s)	705
EcoT22I	ATGCAT	1 cut(s)	438
ErhI	CCWWGG	1 cut(s)	705
Esp3I	CGTCTC	1 cut(s)	115
FaeI	CATG	6 cut(s)	169, 200, 264, 364, 410, 440
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FatI	CATG	6 cut(s)	165, 196, 260, 360, 406, 436
FauI	CCCGC	1 cut(s)	31
FblI	GTMKAC	1 cut(s)	664
Fnu4HI	GCNGC	2 cut(s)	143, 639
FokI	GGATG	2 cut(s)	188, 335
Fsp4HI	GCNGC	2 cut(s)	143, 639
FspBI	CTAG	1 cut(s)	302
GlaI	GCGC	1 cut(s)	687
GluI	GCNGC	2 cut(s)	143, 639
HaeIII	GGCC	2 cut(s)	331, 348
HhaI	GCGC	1 cut(s)	688
Hin1II	CATG	6 cut(s)	169, 200, 264, 364, 410, 440
Hin6I	GCGC	1 cut(s)	686
HinP1I	GCGC	1 cut(s)	686
HinfI	GANTC	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	665
Hpy188I	TCNGA	1 cut(s)	218
Hpy188III	TCNNGA	4 cut(s)	66, 182, 551, 695
Hpy8I	GTNNAC	1 cut(s)	665
Hpy99I	CGWCG	1 cut(s)	614
HpyAV	CCTTC	4 cut(s)	321, 338, 362, 380
HpyCH4IV	ACGT	2 cut(s)	108, 678
HpyCH4V	TGCA	5 cut(s)	260, 360, 436, 641, 746
HpyF10VI	GCNNNNNNNGC	1 cut(s)	151
HpyF3I	CTNAG	1 cut(s)	41
HpySE526I	ACGT	2 cut(s)	108, 678
Hsp92II	CATG	6 cut(s)	169, 200, 264, 364, 410, 440
HspAI	GCGC	1 cut(s)	686
Kzo9I	GATC	4 cut(s)	27, 547, 589, 697
LpnPI	CCDG	7 cut(s)	107, 219, 362, 445, 558, 564, 606
Lsp1109I	GCAGC	2 cut(s)	129, 625
LweI	GCATC	2 cut(s)	423, 673
MaeI	CTAG	1 cut(s)	302
MaeII	ACGT	2 cut(s)	108, 678
MaeIII	GTNAC	2 cut(s)	51, 182
MalI	GATC	4 cut(s)	29, 549, 591, 699
MboI	GATC	4 cut(s)	27, 547, 589, 697
MboII	GAAGA	6 cut(s)	109, 205, 242, 407, 547, 634
MflI	RGATCY	1 cut(s)	697
MluCI	AATT	7 cut(s)	72, 311, 355, 398, 482, 554, 657
MnlI	CCTC	8 cut(s)	48, 62, 73, 286, 469, 531, 628, 703
Mph1103I	ATGCAT	1 cut(s)	438
MroXI	GAANNNNTTC	1 cut(s)	402
MseI	TTAA	4 cut(s)	75, 318, 413, 485
Mva1269I	GAATGC	1 cut(s)	225
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	1 cut(s)	151
NdeII	GATC	4 cut(s)	27, 547, 589, 697
NlaIII	CATG	6 cut(s)	169, 200, 264, 364, 410, 440
NmuCI	GTSAC	2 cut(s)	51, 182
NsiI	ATGCAT	1 cut(s)	438
NspI	RCATGY	1 cut(s)	440
NspV	TTCGAA	1 cut(s)	228
PaeI	GCATGC	1 cut(s)	440
PceI	AGGCCT	2 cut(s)	331, 348
PctI	GAATGC	1 cut(s)	225
PdmI	GAANNNNTTC	1 cut(s)	402
PfeI	GAWTC	1 cut(s)	242
PkrI	GCNGC	2 cut(s)	144, 640
PsuI	RGATCY	1 cut(s)	697
SaqAI	TTAA	4 cut(s)	75, 318, 413, 485
SatI	GCNGC	2 cut(s)	143, 639
Sau3AI	GATC	4 cut(s)	27, 547, 589, 697
SetI	ASST	7 cut(s)	111, 144, 297, 391, 602, 681, 744
SfaNI	GCATC	2 cut(s)	423, 673
SfuI	TTCGAA	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
SphI	GCATGC	1 cut(s)	440
Sse9I	AATT	7 cut(s)	72, 311, 355, 398, 482, 554, 657
SseBI	AGGCCT	2 cut(s)	331, 348
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	302
StuI	AGGCCT	2 cut(s)	331, 348
StyI	CCWWGG	1 cut(s)	705
TaiI	ACGT	2 cut(s)	111, 681
TaqI	TCGA	4 cut(s)	136, 228, 245, 612
TasI	AATT	7 cut(s)	72, 311, 355, 398, 482, 554, 657
TfiI	GAWTC	1 cut(s)	242
Tru1I	TTAA	4 cut(s)	75, 318, 413, 485
Tru9I	TTAA	4 cut(s)	75, 318, 413, 485
TseFI	GTSAC	2 cut(s)	51, 182
TseI	GCWGC	2 cut(s)	142, 638
Tsp45I	GTSAC	2 cut(s)	51, 182
TspDTI	ATGAA	3 cut(s)	47, 395, 747
XapI	RAATTY	2 cut(s)	311, 554
XceI	RCATGY	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	664
XmnI	GAANNNNTTC	1 cut(s)	402
XspI	CTAG	1 cut(s)	302
Zsp2I	ATGCAT	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.