Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005781

Physical Location & Seq

Genomic Coordinates Forward (+)

47093587 .. 47096252

Gene Structure 2666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00426320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGATATGGCTGTGTTTTTGAGACTACCCGCGATCCCTTTCCCTCTAAGAAACTCGTCACTTCATTCCTCAAGGGGAATTAAAATGGCTCTAAAAACCCAGAAGAACACCAACGTCTCTTTCTCTACTGCTACTACTCGAAAGCTGCCCATACTGCTCTTTGACATCATGGACACCATTGTTCGTGACCCTTTTTACCATGACATCCCTGCTTTCTTCAGAATGCCATTCGAAGAACTAATAGAATCGAAGCACCCAACTGCATGGATTGAGTTTGAAAAGGGGTTGATTGATGAGGTGGAACTAGCAAGAAAATTCTTTAAGGATGGAAGGCCTTTTGATTTGGAAGGCCTGAAAAATTGCATGAGAGAAGGATATTCCTATATTGAAGGTGTTGAAGAATTGCTTCATGTATTAAAACATAACAACTATGAGATGCATGCTTTCACAAACTATCCCATCTGGTACCAGATGATTGAGGACAAATTAAACATCTCCAAGTATTTATCTTGGACATTTTGTTCTTGTATAAATGGGAAGAGGAAGCCTGATCCTGAATTCTTTTTGGAAGTTGTGAGACATCTCAAAGTTGATCCAGCAAGCTGTCTATTCGTCGACGATAGGAAGAGAAATGTAGAGGCTGCAAAGGAAGTTGGCATAATTGGTCTACATTTCAAAAACGTAGATGTGCTTCGTCAAGATCTTTCCTTGAAGGGGATTGACATTTCAACAGATGAAACCAACCTTGCACAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0090711

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

HAD_2

Protein Analysis

252

Amino Acids

29.35

Weight (kDa)

6.09

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	124 - 220	4.3e-11	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	126 - 219	7.4e-14	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79790 AT1G79790 AT1G79790
fragaria_vesca	FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710
malus_domestica	MD04G1242100.v1.1 MD12G1258900.v1.1
prunus_persica	Prupe.6G359400_v2.0.a1 Prupe.6G359400_v2.0.a1
pyrus_communis	pycom04g21350 pycom12g23740
rosa_chinensis	RchiOBHm_Chr3g0448181
rosa_laevigata	RLG00000025940
rosa_multiflora	Rmu_sc0013667.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426320
rosa_rugosa	Rorug02G0608500
rosa_samantha	Rh3AG008600 Rh3BG008100 Rh3CG008200 Rh3DG008800
rosa_wichuraiana	Rw3G000680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	465
AccB1I	GGYRCC	1 cut(s)	465
AccI	GTMKAC	2 cut(s)	615, 667
AccII	CGCG	1 cut(s)	32
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	3 cut(s)	28, 545, 587
AcsI	RAATTY	2 cut(s)	314, 557
AcuI	CTGAAG	1 cut(s)	202
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	1 cut(s)	714
AgsI	TTSAA	6 cut(s)	278, 389, 398, 676, 712, 729
AjuI	GAANNNNNNNTTGG	2 cut(s)	104, 136
AloI	GAACNNNNNNTCC	2 cut(s)	505, 537
AluBI	AGCT	2 cut(s)	145, 603
AluI	AGCT	2 cut(s)	145, 603
Alw26I	GTCTC	3 cut(s)	16, 121, 571
AlwI	GGATC	3 cut(s)	28, 545, 587
AoxI	GGCC	2 cut(s)	332, 349
ApeKI	GCWGC	2 cut(s)	145, 641
ApoI	RAATTY	2 cut(s)	314, 557
Asp700I	GAANNNNTTC	1 cut(s)	405
Asp718I	GGTACC	1 cut(s)	465
AsuII	TTCGAA	1 cut(s)	231
BanI	GGYRCC	1 cut(s)	465
BarI	GAAGNNNNNNTAC	2 cut(s)	675, 707
BbvI	GCAGC	2 cut(s)	132, 628
BccI	CCATC	2 cut(s)	320, 467
BcoDI	GTCTC	3 cut(s)	16, 121, 571
BfaI	CTAG	1 cut(s)	305
BglII	AGATCT	1 cut(s)	700
BisI	GCNGC	2 cut(s)	146, 642
BlsI	GCNGC	2 cut(s)	147, 643
BmiI	GGNNCC	1 cut(s)	467
BmsI	GCATC	1 cut(s)	426
Bpu14I	TTCGAA	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	55
Bsc4I	CCNNNNNNNGG	1 cut(s)	714
BseGI	GGATG	2 cut(s)	204, 331
BseLI	CCNNNNNNNGG	1 cut(s)	714
BseXI	GCAGC	2 cut(s)	132, 628
Bsh1236I	CGCG	1 cut(s)	32
BshFI	GGCC	2 cut(s)	334, 351
BshNI	GGYRCC	1 cut(s)	465
BslI	CCNNNNNNNGG	1 cut(s)	714
BsmAI	GTCTC	3 cut(s)	16, 121, 571
BsmBI	CGTCTC	1 cut(s)	121
BsmI	GAATGC	1 cut(s)	228
BsnI	GGCC	2 cut(s)	334, 351
Bsp119I	TTCGAA	1 cut(s)	231
Bsp143I	GATC	4 cut(s)	33, 550, 592, 700
BspACI	CCGC	1 cut(s)	30
BspANI	GGCC	2 cut(s)	334, 351
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	1 cut(s)	467
BspPI	GGATC	3 cut(s)	28, 545, 587
BspT104I	TTCGAA	1 cut(s)	231
BspT107I	GGYRCC	1 cut(s)	465
BssMI	GATC	4 cut(s)	33, 550, 592, 700
Bst6I	CTCTTC	2 cut(s)	533, 620
BstBI	TTCGAA	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	441, 601
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	2 cut(s)	204, 331
BstFNI	CGCG	1 cut(s)	32
BstKTI	GATC	4 cut(s)	36, 553, 595, 703
BstMAI	GTCTC	3 cut(s)	16, 121, 571
BstMBI	GATC	4 cut(s)	33, 550, 592, 700
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNSI	RCATGY	1 cut(s)	443
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	2 cut(s)	132, 628
BstX2I	RGATCY	1 cut(s)	700
BstXI	CCANNNNNNTGG	1 cut(s)	264
BstYI	RGATCY	1 cut(s)	700
BsuRI	GGCC	2 cut(s)	334, 351
BtsCI	GGATG	2 cut(s)	204, 331
Cac8I	GCNNGC	2 cut(s)	441, 601
Csp6I	GTAC	1 cut(s)	466
CviAII	CATG	6 cut(s)	169, 200, 264, 364, 410, 440
CviJI	RGCY	8 cut(s)	11, 89, 145, 334, 351, 547, 603, 641
CviKI_1	RGCY	8 cut(s)	11, 89, 145, 334, 351, 547, 603, 641
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	1 cut(s)	47
DpnI	GATC	4 cut(s)	35, 552, 594, 702
DpnII	GATC	4 cut(s)	33, 550, 592, 700
Eam1104I	CTCTTC	2 cut(s)	533, 620
EarI	CTCTTC	2 cut(s)	533, 620
Eco147I	AGGCCT	2 cut(s)	334, 351
Eco57I	CTGAAG	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	557
EcoT22I	ATGCAT	1 cut(s)	441
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	6 cut(s)	172, 203, 267, 367, 413, 443
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FatI	CATG	6 cut(s)	168, 199, 263, 363, 409, 439
FauI	CCCGC	1 cut(s)	37
FblI	GTMKAC	2 cut(s)	615, 667
Fnu4HI	GCNGC	2 cut(s)	146, 642
FokI	GGATG	2 cut(s)	191, 338
Fsp4HI	GCNGC	2 cut(s)	146, 642
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	2 cut(s)	146, 642
HaeIII	GGCC	2 cut(s)	334, 351
Hin1II	CATG	6 cut(s)	172, 203, 267, 367, 413, 443
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HinfI	GANTC	1 cut(s)	245
Hpy166II	GTNNAC	2 cut(s)	616, 668
Hpy188I	TCNGA	1 cut(s)	221
Hpy188III	TCNNGA	3 cut(s)	185, 554, 698
Hpy8I	GTNNAC	2 cut(s)	616, 668
Hpy99I	CGWCG	2 cut(s)	617, 620
HpyAV	CCTTC	5 cut(s)	324, 341, 365, 383, 706
HpyCH4IV	ACGT	2 cut(s)	114, 681
HpyCH4V	TGCA	5 cut(s)	263, 363, 439, 644, 749
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpyF3I	CTNAG	1 cut(s)	47
HpySE526I	ACGT	2 cut(s)	114, 681
Hsp92II	CATG	6 cut(s)	172, 203, 267, 367, 413, 443
KpnI	GGTACC	1 cut(s)	469
Kzo9I	GATC	4 cut(s)	33, 550, 592, 700
LpnPI	CCDG	8 cut(s)	113, 222, 365, 448, 482, 561, 567, 609
Lsp1109I	GCAGC	2 cut(s)	132, 628
LweI	GCATC	1 cut(s)	426
MaeI	CTAG	1 cut(s)	305
MaeII	ACGT	2 cut(s)	114, 681
MaeIII	GTNAC	2 cut(s)	57, 185
MalI	GATC	4 cut(s)	35, 552, 594, 702
MboI	GATC	4 cut(s)	33, 550, 592, 700
MboII	GAAGA	6 cut(s)	115, 208, 245, 410, 550, 637
MflI	RGATCY	1 cut(s)	700
MluCI	AATT	7 cut(s)	78, 314, 358, 401, 485, 557, 660
MnlI	CCTC	6 cut(s)	54, 79, 289, 472, 534, 631
Mph1103I	ATGCAT	1 cut(s)	441
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	4 cut(s)	81, 321, 416, 488
Mva1269I	GAATGC	1 cut(s)	228
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	154
NdeII	GATC	4 cut(s)	33, 550, 592, 700
NlaIII	CATG	6 cut(s)	172, 203, 267, 367, 413, 443
NlaIV	GGNNCC	1 cut(s)	467
NmuCI	GTSAC	2 cut(s)	57, 185
NsiI	ATGCAT	1 cut(s)	441
NspI	RCATGY	1 cut(s)	443
NspV	TTCGAA	1 cut(s)	231
PaeI	GCATGC	1 cut(s)	443
PceI	AGGCCT	2 cut(s)	334, 351
PctI	GAATGC	1 cut(s)	228
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	2 cut(s)	147, 643
PspN4I	GGNNCC	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	700
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
SalI	GTCGAC	1 cut(s)	614
SaqAI	TTAA	4 cut(s)	81, 321, 416, 488
SatI	GCNGC	2 cut(s)	146, 642
Sau3AI	GATC	4 cut(s)	33, 550, 592, 700
SetI	ASST	7 cut(s)	117, 147, 300, 394, 605, 684, 747
SfaNI	GCATC	1 cut(s)	426
SfuI	TTCGAA	1 cut(s)	231
SgrDI	CGTCGACG	1 cut(s)	614
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
SphI	GCATGC	1 cut(s)	443
Sse9I	AATT	7 cut(s)	78, 314, 358, 401, 485, 557, 660
SseBI	AGGCCT	2 cut(s)	334, 351
SsiI	CCGC	1 cut(s)	30
SspMI	CTAG	1 cut(s)	305
StuI	AGGCCT	2 cut(s)	334, 351
TaiI	ACGT	2 cut(s)	117, 684
TaqI	TCGA	4 cut(s)	139, 231, 248, 615
TasI	AATT	7 cut(s)	78, 314, 358, 401, 485, 557, 660
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	4 cut(s)	81, 321, 416, 488
Tru9I	TTAA	4 cut(s)	81, 321, 416, 488
TseFI	GTSAC	2 cut(s)	57, 185
TseI	GCWGC	2 cut(s)	145, 641
Tsp45I	GTSAC	2 cut(s)	57, 185
TspDTI	ATGAA	3 cut(s)	53, 398, 750
XapI	RAATTY	2 cut(s)	314, 557
XceI	RCATGY	1 cut(s)	443
XmiI	GTMKAC	2 cut(s)	615, 667
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	1 cut(s)	305
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.