Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0005781

Physical Location & Seq

Genomic Coordinates Reverse (-)

31880283 .. 31881915

Gene Structure 1633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1242100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGTTTTTACAAAACACGACGCCCGCAACACTACCAAGCCCTCCTCCTTTCATAGTACCACTCGAAACCTTCCTATAATCCTCTTCGACATCATGGACACAGTTGTTCGTGACCCCTTTTACCGCGATGTCCCTGCCTTCTTTGGAATGTCTTTCGATGAATTAATCGAATGCAAGCACCCGACTGCATGGATCGAGTTCGAAAAGGGGATTACTGATGAGGTGGAGCTTGCAAAAACATTCTTTAAGGATGGAAGGCCTCTAGATTTGGAAGGCCTGAAAAATTGCATGAGAAAAGGATACTACTATGTTGAAGGTGTTGAAGAATTGCTTTATGTATTAAAAGATAACAACTACGAGATGCATGCTTTCACAAACTATCCCATCTGGTTAGATGAAAAATCGACGATCTTGTTTTCTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0090711

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

HAD_2

Protein Analysis

142

Amino Acids

16.66

Weight (kDa)

5.05

Isoelectric Point (pI)

42.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79790 AT1G79790 AT1G79790
fragaria_vesca	FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710
malus_domestica	MD04G1242100.v1.1 MD12G1258900.v1.1
prunus_persica	Prupe.6G359400_v2.0.a1 Prupe.6G359400_v2.0.a1
pyrus_communis	pycom04g21350 pycom12g23740
rosa_chinensis	RchiOBHm_Chr3g0448181
rosa_laevigata	RLG00000025940
rosa_multiflora	Rmu_sc0013667.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426320
rosa_rugosa	Rorug02G0608500
rosa_samantha	Rh3AG008600 Rh3BG008100 Rh3CG008200 Rh3DG008800
rosa_wichuraiana	Rw3G000680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	126
AciI	CCGC	2 cut(s)	25, 124
AclWI	GGATC	1 cut(s)	200
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	1 cut(s)	58
AgsI	TTSAA	2 cut(s)	314, 323
AluBI	AGCT	1 cut(s)	229
AluI	AGCT	1 cut(s)	229
AlwI	GGATC	1 cut(s)	200
AoxI	GGCC	2 cut(s)	257, 274
AseI	ATTAAT	1 cut(s)	164
AsuII	TTCGAA	1 cut(s)	201
BccI	CCATC	2 cut(s)	245, 392
BcgI	CGANNNNNNTGC	4 cut(s)	116, 150, 347, 381
BciVI	GTATCC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	263
BfuI	GTATCC	1 cut(s)	293
BmsI	GCATC	1 cut(s)	351
Bpu14I	TTCGAA	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	21
BseGI	GGATG	1 cut(s)	256
BseRI	GAGGAG	1 cut(s)	34
Bsh1236I	CGCG	1 cut(s)	126
BshFI	GGCC	2 cut(s)	259, 276
BslFI	GGGAC	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	116
BsmI	GAATGC	1 cut(s)	176
BsnI	GGCC	2 cut(s)	259, 276
Bsp119I	TTCGAA	1 cut(s)	201
Bsp143I	GATC	2 cut(s)	192, 408
BspACI	CCGC	2 cut(s)	25, 124
BspANI	GGCC	2 cut(s)	259, 276
BspFNI	CGCG	1 cut(s)	126
BspPI	GGATC	1 cut(s)	200
BspT104I	TTCGAA	1 cut(s)	201
BssMI	GATC	2 cut(s)	192, 408
BssNI	GRCGYC	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	89
BstACI	GRCGYC	1 cut(s)	21
BstBI	TTCGAA	1 cut(s)	201
BstC8I	GCNNGC	4 cut(s)	25, 176, 231, 366
BstF5I	GGATG	1 cut(s)	256
BstFNI	CGCG	1 cut(s)	126
BstKTI	GATC	2 cut(s)	195, 411
BstMBI	GATC	2 cut(s)	192, 408
BstNSI	RCATGY	1 cut(s)	368
BstUI	CGCG	1 cut(s)	126
BsuI	GTATCC	1 cut(s)	293
BsuRI	GGCC	2 cut(s)	259, 276
BtgZI	GCGATG	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	256
Cac8I	GCNNGC	4 cut(s)	25, 176, 231, 366
CseI	GACGC	1 cut(s)	29
Csp6I	GTAC	1 cut(s)	57
CviAII	CATG	4 cut(s)	94, 189, 289, 365
CviJI	RGCY	4 cut(s)	40, 229, 259, 276
CviKI_1	RGCY	4 cut(s)	40, 229, 259, 276
CviQI	GTAC	1 cut(s)	57
DpnI	GATC	2 cut(s)	194, 410
DpnII	GATC	2 cut(s)	192, 408
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco147I	AGGCCT	2 cut(s)	259, 276
EcoT22I	ATGCAT	1 cut(s)	366
FaeI	CATG	4 cut(s)	97, 192, 292, 368
FaiI	YATR	8 cut(s)	54, 77, 95, 190, 290, 309, 336, 366
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FaqI	GGGAC	1 cut(s)	116
FatI	CATG	4 cut(s)	93, 188, 288, 364
FauI	CCCGC	1 cut(s)	32
FokI	GGATG	1 cut(s)	263
FspBI	CTAG	1 cut(s)	263
HaeIII	GGCC	2 cut(s)	259, 276
HgaI	GACGC	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	4 cut(s)	97, 192, 292, 368
Hpy188III	TCNNGA	2 cut(s)	110, 263
Hpy99I	CGWCG	2 cut(s)	23, 409
HpyAV	CCTTC	5 cut(s)	80, 148, 249, 266, 308
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	5 cut(s)	174, 188, 233, 288, 364
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	4 cut(s)	97, 192, 292, 368
Kzo9I	GATC	2 cut(s)	192, 408
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	3 cut(s)	147, 290, 373
LweI	GCATC	1 cut(s)	351
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	2 cut(s)	194, 410
MboI	GATC	2 cut(s)	192, 408
MboII	GAAGA	2 cut(s)	76, 335
MluCI	AATT	3 cut(s)	161, 283, 326
MnlI	CCTC	5 cut(s)	52, 55, 92, 214, 270
Mph1103I	ATGCAT	1 cut(s)	366
MseI	TTAA	4 cut(s)	164, 246, 341, 424
Mva1269I	GAATGC	1 cut(s)	176
MvnI	CGCG	1 cut(s)	126
NdeII	GATC	2 cut(s)	192, 408
NlaIII	CATG	4 cut(s)	97, 192, 292, 368
NmuCI	GTSAC	1 cut(s)	110
NsiI	ATGCAT	1 cut(s)	366
NspI	RCATGY	1 cut(s)	368
NspV	TTCGAA	1 cut(s)	201
PaeI	GCATGC	1 cut(s)	368
PceI	AGGCCT	2 cut(s)	259, 276
PctI	GAATGC	1 cut(s)	176
PshBI	ATTAAT	1 cut(s)	164
RsaI	GTAC	1 cut(s)	58
RsaNI	GTAC	1 cut(s)	57
SaqAI	TTAA	4 cut(s)	164, 246, 341, 424
Sau3AI	GATC	2 cut(s)	192, 408
SetI	ASST	4 cut(s)	72, 225, 231, 319
SfaNI	GCATC	1 cut(s)	351
SfuI	TTCGAA	1 cut(s)	201
SphI	GCATGC	1 cut(s)	368
Sse9I	AATT	3 cut(s)	161, 283, 326
SseBI	AGGCCT	2 cut(s)	259, 276
SsiI	CCGC	2 cut(s)	25, 124
SspMI	CTAG	1 cut(s)	263
StuI	AGGCCT	2 cut(s)	259, 276
TaaI	ACNGT	1 cut(s)	103
TaqI	TCGA	7 cut(s)	64, 87, 156, 168, 195, 201, 404
TasI	AATT	3 cut(s)	161, 283, 326
Tru1I	TTAA	4 cut(s)	164, 246, 341, 424
Tru9I	TTAA	4 cut(s)	164, 246, 341, 424
TseFI	GTSAC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	3 cut(s)	41, 174, 411
VspI	ATTAAT	1 cut(s)	164
XbaI	TCTAGA	1 cut(s)	262
XceI	RCATGY	1 cut(s)	368
XspI	CTAG	1 cut(s)	263
Zsp2I	ATGCAT	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.