Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0005781

Physical Location & Seq

Genomic Coordinates Forward (+)

553250 .. 555508

Gene Structure 2259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG008600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCTCTAAAAACCCAGAAGAACAGCAACGTCTCTTTCTCTACTGCTTCTACTCGAAAGCTGCCCATACTGCTCTTTGACATCATGGACACCATTGTTCGTGACCCTTTTTACCATGACATCCCTGCTTTCTTCAGAATGCCATTCGAAGAACTAATAGAATCGAAGCACCCAACTGCATGGATTGAGTTTGAAAAGGGGTTGATTGATGAGGTGGAACTAGCAAGAAAATTCTTTAAGGATGGAAGGCCTTTTGATTTGGAAGGCCTGAAAAATTGCATGAGAGAAGGATATTCCTATATTGAAGGTGTTGAAGAATTGCTTCATGTATTAAAACATAACAACTATGAGATGCATGCTTTCACAAACTATCCCATCTGGTACGAGATGATTGAGGACAAATTAAACATCTCCAAGTATTTATCTTGGACATTTTGTTCTTGTATAAATGGGAAGAGGAAGCCTGATCCTGAATTCTTTTTGGACGTTGTGAGACATCTCAAAGTTGATCCAGCAAGCTGTCTATTCGTCGATGATAGGAAGAGAAATGTAGAGGCTGCAAAGGAAGTTGGCATAATTGGTCTACATTTCAAAAACGTAGATGTGCTTCGTCAAGATCTTTCCTTGAAGGGGATTGACATTTCAACAGATGAAACCAACCTTGCACAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0090711

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

HAD_2

Protein Analysis

224

Amino Acids

26.18

Weight (kDa)

5.45

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	96 - 192	7.9e-11	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	98 - 191	9.8e-14	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79790 AT1G79790 AT1G79790
fragaria_vesca	FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710
malus_domestica	MD04G1242100.v1.1 MD12G1258900.v1.1
prunus_persica	Prupe.6G359400_v2.0.a1 Prupe.6G359400_v2.0.a1
pyrus_communis	pycom04g21350 pycom12g23740
rosa_chinensis	RchiOBHm_Chr3g0448181
rosa_laevigata	RLG00000025940
rosa_multiflora	Rmu_sc0013667.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426320
rosa_rugosa	Rorug02G0608500
rosa_samantha	Rh3AG008600 Rh3BG008100 Rh3CG008200 Rh3DG008800
rosa_wichuraiana	Rw3G000680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	583
AclWI	GGATC	2 cut(s)	461, 503
AcsI	RAATTY	2 cut(s)	230, 473
AcuI	CTGAAG	1 cut(s)	118
AfaI	GTAC	1 cut(s)	383
AfiI	CCNNNNNNNGG	1 cut(s)	630
AgsI	TTSAA	6 cut(s)	194, 305, 314, 592, 628, 645
AloI	GAACNNNNNNTCC	2 cut(s)	421, 453
AluBI	AGCT	2 cut(s)	61, 519
AluI	AGCT	2 cut(s)	61, 519
Alw26I	GTCTC	2 cut(s)	37, 487
AlwI	GGATC	2 cut(s)	461, 503
AoxI	GGCC	2 cut(s)	248, 265
ApeKI	GCWGC	2 cut(s)	61, 557
ApoI	RAATTY	2 cut(s)	230, 473
Asp700I	GAANNNNTTC	1 cut(s)	321
AsuII	TTCGAA	1 cut(s)	147
BarI	GAAGNNNNNNTAC	2 cut(s)	591, 623
BbvI	GCAGC	2 cut(s)	48, 544
BccI	CCATC	2 cut(s)	236, 383
BcoDI	GTCTC	2 cut(s)	37, 487
BfaI	CTAG	1 cut(s)	221
BglII	AGATCT	1 cut(s)	616
BisI	GCNGC	2 cut(s)	62, 558
BlsI	GCNGC	2 cut(s)	63, 559
BmsI	GCATC	1 cut(s)	342
Bpu14I	TTCGAA	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	1 cut(s)	630
BseGI	GGATG	2 cut(s)	120, 247
BseLI	CCNNNNNNNGG	1 cut(s)	630
BseXI	GCAGC	2 cut(s)	48, 544
BshFI	GGCC	2 cut(s)	250, 267
BslI	CCNNNNNNNGG	1 cut(s)	630
BsmAI	GTCTC	2 cut(s)	37, 487
BsmBI	CGTCTC	1 cut(s)	37
BsmI	GAATGC	1 cut(s)	144
BsnI	GGCC	2 cut(s)	250, 267
Bsp119I	TTCGAA	1 cut(s)	147
Bsp143I	GATC	3 cut(s)	466, 508, 616
BspANI	GGCC	2 cut(s)	250, 267
BspPI	GGATC	2 cut(s)	461, 503
BspT104I	TTCGAA	1 cut(s)	147
BssMI	GATC	3 cut(s)	466, 508, 616
Bst6I	CTCTTC	2 cut(s)	449, 536
BstBI	TTCGAA	1 cut(s)	147
BstC8I	GCNNGC	2 cut(s)	357, 517
BstF5I	GGATG	2 cut(s)	120, 247
BstKTI	GATC	3 cut(s)	469, 511, 619
BstMAI	GTCTC	2 cut(s)	37, 487
BstMBI	GATC	3 cut(s)	466, 508, 616
BstMWI	GCNNNNNNNGC	1 cut(s)	70
BstNSI	RCATGY	1 cut(s)	359
BstV1I	GCAGC	2 cut(s)	48, 544
BstX2I	RGATCY	1 cut(s)	616
BstXI	CCANNNNNNTGG	1 cut(s)	180
BstYI	RGATCY	1 cut(s)	616
BsuRI	GGCC	2 cut(s)	250, 267
BtsCI	GGATG	2 cut(s)	120, 247
Cac8I	GCNNGC	2 cut(s)	357, 517
Csp6I	GTAC	1 cut(s)	382
CviAII	CATG	6 cut(s)	85, 116, 180, 280, 326, 356
CviJI	RGCY	7 cut(s)	5, 61, 250, 267, 463, 519, 557
CviKI_1	RGCY	7 cut(s)	5, 61, 250, 267, 463, 519, 557
CviQI	GTAC	1 cut(s)	382
DpnI	GATC	3 cut(s)	468, 510, 618
DpnII	GATC	3 cut(s)	466, 508, 616
Eam1104I	CTCTTC	2 cut(s)	449, 536
EarI	CTCTTC	2 cut(s)	449, 536
Eco147I	AGGCCT	2 cut(s)	250, 267
Eco57I	CTGAAG	1 cut(s)	118
EcoRI	GAATTC	1 cut(s)	473
EcoT22I	ATGCAT	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	6 cut(s)	88, 119, 183, 283, 329, 359
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FatI	CATG	6 cut(s)	84, 115, 179, 279, 325, 355
FblI	GTMKAC	1 cut(s)	583
Fnu4HI	GCNGC	2 cut(s)	62, 558
FokI	GGATG	2 cut(s)	107, 254
Fsp4HI	GCNGC	2 cut(s)	62, 558
FspBI	CTAG	1 cut(s)	221
GluI	GCNGC	2 cut(s)	62, 558
HaeIII	GGCC	2 cut(s)	250, 267
Hin1II	CATG	6 cut(s)	88, 119, 183, 283, 329, 359
HinfI	GANTC	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	584
Hpy188I	TCNGA	1 cut(s)	137
Hpy188III	TCNNGA	3 cut(s)	101, 470, 614
Hpy8I	GTNNAC	1 cut(s)	584
Hpy99I	CGWCG	1 cut(s)	533
HpyAV	CCTTC	5 cut(s)	240, 257, 281, 299, 622
HpyCH4IV	ACGT	3 cut(s)	30, 486, 597
HpyCH4V	TGCA	5 cut(s)	179, 279, 355, 560, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	70
HpySE526I	ACGT	3 cut(s)	30, 486, 597
Hsp92II	CATG	6 cut(s)	88, 119, 183, 283, 329, 359
Kzo9I	GATC	3 cut(s)	466, 508, 616
LpnPI	CCDG	7 cut(s)	29, 138, 281, 364, 477, 483, 525
Lsp1109I	GCAGC	2 cut(s)	48, 544
LweI	GCATC	1 cut(s)	342
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	3 cut(s)	30, 486, 597
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	3 cut(s)	468, 510, 618
MboI	GATC	3 cut(s)	466, 508, 616
MboII	GAAGA	6 cut(s)	31, 124, 161, 326, 466, 553
MflI	RGATCY	1 cut(s)	616
MluCI	AATT	6 cut(s)	230, 274, 317, 401, 473, 576
MnlI	CCTC	4 cut(s)	205, 388, 450, 547
Mph1103I	ATGCAT	1 cut(s)	357
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	3 cut(s)	237, 332, 404
Mva1269I	GAATGC	1 cut(s)	144
MwoI	GCNNNNNNNGC	1 cut(s)	70
NdeII	GATC	3 cut(s)	466, 508, 616
NlaIII	CATG	6 cut(s)	88, 119, 183, 283, 329, 359
NmuCI	GTSAC	1 cut(s)	101
NsiI	ATGCAT	1 cut(s)	357
NspI	RCATGY	1 cut(s)	359
NspV	TTCGAA	1 cut(s)	147
PaeI	GCATGC	1 cut(s)	359
PceI	AGGCCT	2 cut(s)	250, 267
PctI	GAATGC	1 cut(s)	144
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	63, 559
PsuI	RGATCY	1 cut(s)	616
RsaI	GTAC	1 cut(s)	383
RsaNI	GTAC	1 cut(s)	382
SaqAI	TTAA	3 cut(s)	237, 332, 404
SatI	GCNGC	2 cut(s)	62, 558
Sau3AI	GATC	3 cut(s)	466, 508, 616
SetI	ASST	8 cut(s)	33, 63, 216, 310, 489, 521, 600, 663
SfaNI	GCATC	1 cut(s)	342
SfuI	TTCGAA	1 cut(s)	147
SphI	GCATGC	1 cut(s)	359
Sse9I	AATT	6 cut(s)	230, 274, 317, 401, 473, 576
SseBI	AGGCCT	2 cut(s)	250, 267
SspMI	CTAG	1 cut(s)	221
StuI	AGGCCT	2 cut(s)	250, 267
TaiI	ACGT	3 cut(s)	33, 489, 600
TaqI	TCGA	4 cut(s)	55, 147, 164, 531
TasI	AATT	6 cut(s)	230, 274, 317, 401, 473, 576
TfiI	GAWTC	1 cut(s)	161
Tru1I	TTAA	3 cut(s)	237, 332, 404
Tru9I	TTAA	3 cut(s)	237, 332, 404
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	2 cut(s)	61, 557
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	2 cut(s)	314, 666
XapI	RAATTY	2 cut(s)	230, 473
XceI	RCATGY	1 cut(s)	359
XmiI	GTMKAC	1 cut(s)	583
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	1 cut(s)	221
Zsp2I	ATGCAT	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.