Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005781

Physical Location & Seq

Genomic Coordinates Reverse (-)

30378643 .. 30381629

Gene Structure 2987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G359400.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGCTCTGTTCTTGAAACTACCCGCGATCCCTTTCCCCGTAAGTCTAAGGCACGGCTGCTCACTTCAATTTCGTTCCACAGCAACACCAATATCAACATCGACAAGAATGGCTCTATCTCCCCACAATGTCTCTTTTCATACCAATACGACCACTCAAAAGCTTCCTATACTCCTCTTCGACATCATGGACACCGTTGTTCGCGACCCTTTTTACCATGACGTCCCTGCCTTCTTCAGAATGTCTTTCGAAGAACTTATAGAATGCAAGCACCCAACTGCGTGGATTGAGTTTGAAAAGGGGATTATTGATGAGATGGAGCTAGCGAGAAAGTTCTTTACTGATGGAAGGCCTCTAGATTTGGAAGGCCTAAAAGATTGCATGAGAAAGGGATATTCCTATGTTGAAGGCATAGAAGAATTGCTTCATTCATTGAAAGATAGCAACTATGAGATGCATGCCTTCACAAACTATCCCATCTGGTACGAGATGATTGAGGACAAATTAAACATCTCAAAATATTTATCTTGGACGTTCTGTTCATGTATAAGTGGGAAGAGGAAGCCTGATCCTGAATTCTATTTGGAAGTTGAAAGACTTCTAAAAGTTGATCCAGCTAGCTGTATCTTCATCGACAACAGATTTGCTTCGACAAGATCTTTCTTTGCTGGGGATTGGCATTTCAACAAATCAAACCAAGCTTGCACAAGAATAGTCTTCTTCATCACTTCTTGTAATTCAATTTTGATGTATATCAATTGTTTTACCAGTTGCTTTCTTGCTGGGAATCAAGAATTTTCTTTCAAAATGAGAAGCGAATTGGCTAACTTTCTGAGCAACTTTCCAGAAAGAAAATCGCCTTCATACGTCGAAAGTTGTATGTTCCTGTGGTCACAAAGTTTTTCAATAACAATTTTACCTCCGATTGATCTCAATAGAAAACCATGGGGAGGGTTGTTGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0090711

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

HAD_2

Protein Analysis

322

Amino Acids

37.3

Weight (kDa)

6.26

Isoelectric Point (pI)

56.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79790 AT1G79790 AT1G79790
fragaria_vesca	FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710
malus_domestica	MD04G1242100.v1.1 MD12G1258900.v1.1
prunus_persica	Prupe.6G359400_v2.0.a1 Prupe.6G359400_v2.0.a1
pyrus_communis	pycom04g21350 pycom12g23740
rosa_chinensis	RchiOBHm_Chr3g0448181
rosa_laevigata	RLG00000025940
rosa_multiflora	Rmu_sc0013667.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426320
rosa_rugosa	Rorug02G0608500
rosa_samantha	Rh3AG008600 Rh3BG008100 Rh3CG008200 Rh3DG008800
rosa_wichuraiana	Rw3G000680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	225
AccII	CGCG	2 cut(s)	26, 204
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	3 cut(s)	22, 563, 605
AcsI	RAATTY	2 cut(s)	575, 794
AcuI	CTGAAG	1 cut(s)	220
AcyI	GRCGYC	1 cut(s)	222
AfaI	GTAC	1 cut(s)	485
AfiI	CCNNNNNNNGG	1 cut(s)	950
AloI	GAACNNNNNNTCC	2 cut(s)	523, 555
AluBI	AGCT	5 cut(s)	163, 322, 617, 621, 701
AluI	AGCT	5 cut(s)	163, 322, 617, 621, 701
Alw26I	GTCTC	1 cut(s)	136
AlwI	GGATC	3 cut(s)	22, 563, 605
AoxI	GGCC	2 cut(s)	350, 367
ApeKI	GCWGC	1 cut(s)	57
ApoI	RAATTY	2 cut(s)	575, 794
ArsI	GACNNNNNNTTYG	2 cut(s)	626, 658
Asp700I	GAANNNNTTC	2 cut(s)	423, 597
AsuII	TTCGAA	1 cut(s)	249
AsuNHI	GCTAGC	2 cut(s)	322, 617
BbsI	GAAGAC	1 cut(s)	709
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	3 cut(s)	310, 338, 485
BceAI	ACGGC	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	136
BfaI	CTAG	3 cut(s)	323, 356, 618
BglII	AGATCT	1 cut(s)	656
BisI	GCNGC	1 cut(s)	58
BlsI	GCNGC	1 cut(s)	59
BmsI	GCATC	1 cut(s)	444
BmtI	GCTAGC	2 cut(s)	326, 621
BpiI	GAAGAC	1 cut(s)	709
Bpu14I	TTCGAA	1 cut(s)	249
BsaBI	GATNNNNATC	1 cut(s)	752
BsaHI	GRCGYC	1 cut(s)	222
BsaJI	CCNNGG	1 cut(s)	944
Bsc4I	CCNNNNNNNGG	1 cut(s)	950
Bse1I	ACTGG	1 cut(s)	768
Bse8I	GATNNNNATC	1 cut(s)	752
BseDI	CCNNGG	1 cut(s)	944
BseJI	GATNNNNATC	1 cut(s)	752
BseLI	CCNNNNNNNGG	1 cut(s)	950
BseMII	CTCAG	1 cut(s)	824
BseNI	ACTGG	1 cut(s)	768
BseRI	GAGGAG	1 cut(s)	164
BseXI	GCAGC	1 cut(s)	44
BseYI	CCCAGC	2 cut(s)	668, 782
Bsh1236I	CGCG	2 cut(s)	26, 204
BshFI	GGCC	2 cut(s)	352, 369
BslFI	GGGAC	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	950
BsmAI	GTCTC	1 cut(s)	136
BsmFI	GGGAC	1 cut(s)	209
BsmI	GAATGC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	352, 369
Bsp119I	TTCGAA	1 cut(s)	249
Bsp143I	GATC	6 cut(s)	27, 568, 610, 656, 928, 960
Bsp19I	CCATGG	1 cut(s)	944
Bsp68I	TCGCGA	1 cut(s)	204
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	2 cut(s)	352, 369
BspCNI	CTCAG	1 cut(s)	825
BspFNI	CGCG	2 cut(s)	26, 204
BspOI	GCTAGC	2 cut(s)	326, 621
BspPI	GGATC	3 cut(s)	22, 563, 605
BspT104I	TTCGAA	1 cut(s)	249
BsrI	ACTGG	1 cut(s)	768
BssECI	CCNNGG	1 cut(s)	944
BssMI	GATC	6 cut(s)	27, 568, 610, 656, 928, 960
BssNI	GRCGYC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	944
Bst4CI	ACNGT	1 cut(s)	196
Bst6I	CTCTTC	2 cut(s)	182, 551
BstACI	GRCGYC	1 cut(s)	222
BstBI	TTCGAA	1 cut(s)	249
BstC8I	GCNNGC	5 cut(s)	269, 324, 459, 619, 703
BstDEI	CTNAG	2 cut(s)	47, 833
BstDSI	CCRYGG	1 cut(s)	944
BstFNI	CGCG	2 cut(s)	26, 204
BstKTI	GATC	6 cut(s)	30, 571, 613, 659, 931, 963
BstMAI	GTCTC	1 cut(s)	136
BstMBI	GATC	6 cut(s)	27, 568, 610, 656, 928, 960
BstNSI	RCATGY	1 cut(s)	461
BstUI	CGCG	2 cut(s)	26, 204
BstV1I	GCAGC	1 cut(s)	44
BstV2I	GAAGAC	1 cut(s)	709
BstX2I	RGATCY	1 cut(s)	656
BstXI	CCANNNNNNTGG	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	656
BsuRI	GGCC	2 cut(s)	352, 369
BtgI	CCRYGG	1 cut(s)	944
BtuMI	TCGCGA	1 cut(s)	204
Cac8I	GCNNGC	5 cut(s)	269, 324, 459, 619, 703
Csp6I	GTAC	1 cut(s)	484
CviAII	CATG	6 cut(s)	187, 218, 382, 458, 543, 945
CviQI	GTAC	1 cut(s)	484
DdeI	CTNAG	2 cut(s)	47, 833
DpnI	GATC	6 cut(s)	29, 570, 612, 658, 930, 962
DpnII	GATC	6 cut(s)	27, 568, 610, 656, 928, 960
Eam1104I	CTCTTC	2 cut(s)	182, 551
EarI	CTCTTC	2 cut(s)	182, 551
Eco130I	CCWWGG	1 cut(s)	944
Eco147I	AGGCCT	2 cut(s)	352, 369
Eco57I	CTGAAG	1 cut(s)	220
EcoRI	GAATTC	1 cut(s)	575
EcoT14I	CCWWGG	1 cut(s)	944
EcoT22I	ATGCAT	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	944
FaeI	CATG	6 cut(s)	190, 221, 385, 461, 546, 948
FalI	AAGNNNNNCTT	2 cut(s)	408, 440
FaqI	GGGAC	1 cut(s)	209
FatI	CATG	6 cut(s)	186, 217, 381, 457, 542, 944
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	1 cut(s)	58
Fsp4HI	GCNGC	1 cut(s)	58
FspBI	CTAG	3 cut(s)	323, 356, 618
GluI	GCNGC	1 cut(s)	58
GsaI	CCCAGC	2 cut(s)	672, 786
HaeIII	GGCC	2 cut(s)	352, 369
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	6 cut(s)	190, 221, 385, 461, 546, 948
HindIII	AAGCTT	2 cut(s)	161, 699
HinfI	GANTC	1 cut(s)	787
Hpy188I	TCNGA	4 cut(s)	239, 834, 924, 965
Hpy188III	TCNNGA	6 cut(s)	13, 203, 356, 572, 791, 845
Hpy99I	CGWCG	1 cut(s)	872
HpyAV	CCTTC	6 cut(s)	241, 342, 359, 401, 472, 870
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	3 cut(s)	222, 533, 867
HpyCH4V	TGCA	4 cut(s)	267, 381, 457, 705
HpyF3I	CTNAG	2 cut(s)	47, 833
HpySE526I	ACGT	3 cut(s)	222, 533, 867
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	6 cut(s)	190, 221, 385, 461, 546, 948
Kzo9I	GATC	6 cut(s)	27, 568, 610, 656, 928, 960
LmnI	GCTCC	1 cut(s)	319
Lsp1109I	GCAGC	1 cut(s)	44
LweI	GCATC	1 cut(s)	444
MaeI	CTAG	3 cut(s)	323, 356, 618
MaeII	ACGT	3 cut(s)	222, 533, 867
MaeIII	GTNAC	1 cut(s)	891
MalI	GATC	6 cut(s)	29, 570, 612, 658, 930, 962
MboI	GATC	6 cut(s)	27, 568, 610, 656, 928, 960
MboII	GAAGA	8 cut(s)	169, 226, 263, 428, 568, 619, 709, 712
MfeI	CAATTG	1 cut(s)	757
MflI	RGATCY	1 cut(s)	656
MnlI	CCTC	6 cut(s)	185, 363, 490, 552, 930, 944
Mph1103I	ATGCAT	1 cut(s)	459
MroXI	GAANNNNTTC	2 cut(s)	423, 597
MseI	TTAA	1 cut(s)	506
MunI	CAATTG	1 cut(s)	757
Mva1269I	GAATGC	1 cut(s)	269
MvnI	CGCG	2 cut(s)	26, 204
NcoI	CCATGG	1 cut(s)	944
NdeII	GATC	6 cut(s)	27, 568, 610, 656, 928, 960
NheI	GCTAGC	2 cut(s)	322, 617
NlaIII	CATG	6 cut(s)	190, 221, 385, 461, 546, 948
NmuCI	GTSAC	1 cut(s)	891
NruI	TCGCGA	1 cut(s)	204
NsiI	ATGCAT	1 cut(s)	459
NspI	RCATGY	1 cut(s)	461
NspV	TTCGAA	1 cut(s)	249
PaeI	GCATGC	1 cut(s)	461
PceI	AGGCCT	2 cut(s)	352, 369
PctI	GAATGC	1 cut(s)	269
PdmI	GAANNNNTTC	2 cut(s)	423, 597
PfeI	GAWTC	1 cut(s)	787
PkrI	GCNGC	1 cut(s)	59
PspFI	CCCAGC	2 cut(s)	668, 782
PsuI	RGATCY	1 cut(s)	656
RruI	TCGCGA	1 cut(s)	204
RsaI	GTAC	1 cut(s)	485
RsaNI	GTAC	1 cut(s)	484
SaqAI	TTAA	1 cut(s)	506
SatI	GCNGC	1 cut(s)	58
Sau3AI	GATC	6 cut(s)	27, 568, 610, 656, 928, 960
SetI	ASST	9 cut(s)	165, 225, 324, 536, 619, 623, 703, 870, 922
SfaNI	GCATC	1 cut(s)	444
SfuI	TTCGAA	1 cut(s)	249
SphI	GCATGC	1 cut(s)	461
SseBI	AGGCCT	2 cut(s)	352, 369
SsiI	CCGC	1 cut(s)	24
SspI	AATATT	1 cut(s)	521
SspMI	CTAG	3 cut(s)	323, 356, 618
StuI	AGGCCT	2 cut(s)	352, 369
StyI	CCWWGG	1 cut(s)	944
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	3 cut(s)	225, 536, 870
TaqI	TCGA	6 cut(s)	101, 180, 249, 633, 650, 870
TfiI	GAWTC	1 cut(s)	787
Tru1I	TTAA	1 cut(s)	506
Tru9I	TTAA	1 cut(s)	506
TseFI	GTSAC	1 cut(s)	891
TseI	GCWGC	1 cut(s)	57
Tsp45I	GTSAC	1 cut(s)	891
TspDTI	ATGAA	7 cut(s)	128, 416, 420, 531, 619, 712, 852
XapI	RAATTY	2 cut(s)	575, 794
XbaI	TCTAGA	1 cut(s)	355
XceI	RCATGY	1 cut(s)	461
XmnI	GAANNNNTTC	2 cut(s)	423, 597
XspI	CTAG	3 cut(s)	323, 356, 618
ZraI	GACGTC	1 cut(s)	223
Zsp2I	ATGCAT	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.