Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0005781

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG008100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGGCTGTGTTTTTGAGACTACCCGCGATCCCTTTCCCTCTAAGAAACTCGTCACTTCATTCCTCAAGAGGAATAAAAATGGCTCTAAAAACCCAGAAGAACAGCAACGTCTCTTTCTCTACTGCTTCTACTCGAAAGCTGCCCATACTGCTCTTTGACATCATGGACACCATTGTTCGTGACCCTTTTTACCATGACATCCCTGCTTTCTTCAGAATGCCATTCGAAGAACTAATAGAATCGAAGCACCCAACTGCATGGATTGAGTTTGAAAAGGGGTTGATTGATGAGGTGGAACTAGCAAGAAAATTCTTTAAGGATGGAAGGCCTTTTGATTTGGAAGGCCTGAAAAATTGCATGAGAGAAGGATATTCCTATATTGAAGGTGTTGAAGAATTGCTTCATGTATTAAAACATAACAACTATGAGATGCATGCTTTCACAAACTATCCCATCTGGTACGAGATGATTGAGGACAAATTAAACATCTCCAAGTATTTATCTTGGACATTTTGTTCTTGTATAAATGGTATGTTAAGCAGTTTTTGCATTTTGCTTTTGGGATTCTCCTCCATCTGTTGGCTGCACAAGCATGTAGATGAATCGCTTACTCTACTTATTCATGTTTGTTCTTCAGGGAAGAGGAAGCCTGATCCTGAATTCTTTTTGGACGTTGTGAGACATCTCAAAGTTGATCCAGCAAGCTGTCTATTCGTCGATGATAGGTTTGCATCTTTTGTGTATGAACATAGGATTCCCATTTTATCATGCCATTTATTTAGGACTAAGAATCTATATACTATCCTCTTATACAGACCAAGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0090711

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

HAD_2

Protein Analysis

275

Amino Acids

32.22

Weight (kDa)

7.64

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79790 AT1G79790 AT1G79790
fragaria_vesca	FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710
malus_domestica	MD04G1242100.v1.1 MD12G1258900.v1.1
prunus_persica	Prupe.6G359400_v2.0.a1 Prupe.6G359400_v2.0.a1
pyrus_communis	pycom04g21350 pycom12g23740
rosa_chinensis	RchiOBHm_Chr3g0448181
rosa_laevigata	RLG00000025940
rosa_multiflora	Rmu_sc0013667.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426320
rosa_rugosa	Rorug02G0608500
rosa_samantha	Rh3AG008600 Rh3BG008100 Rh3CG008200 Rh3DG008800
rosa_wichuraiana	Rw3G000680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	579
AccII	CGCG	1 cut(s)	26
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	3 cut(s)	22, 647, 689
AcsI	RAATTY	2 cut(s)	308, 659
AcuI	CTGAAG	2 cut(s)	196, 618
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	1 cut(s)	579
AgsI	TTSAA	3 cut(s)	272, 383, 392
AloI	GAACNNNNNNTCC	2 cut(s)	499, 531
AluBI	AGCT	2 cut(s)	139, 705
AluI	AGCT	2 cut(s)	139, 705
Alw26I	GTCTC	3 cut(s)	10, 115, 673
AlwI	GGATC	3 cut(s)	22, 647, 689
AoxI	GGCC	2 cut(s)	326, 343
ApeKI	GCWGC	2 cut(s)	139, 583
ApoI	RAATTY	2 cut(s)	308, 659
Asp700I	GAANNNNTTC	1 cut(s)	399
AsuII	TTCGAA	1 cut(s)	225
BbvI	GCAGC	2 cut(s)	126, 570
BccI	CCATC	3 cut(s)	314, 461, 581
BcoDI	GTCTC	3 cut(s)	10, 115, 673
BfaI	CTAG	1 cut(s)	299
BisI	GCNGC	2 cut(s)	140, 584
BlsI	GCNGC	2 cut(s)	141, 585
BmsI	GCATC	2 cut(s)	420, 740
Bpu14I	TTCGAA	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	579
BseGI	GGATG	2 cut(s)	198, 325
BseLI	CCNNNNNNNGG	1 cut(s)	579
BseRI	GAGGAG	1 cut(s)	559
BseXI	GCAGC	2 cut(s)	126, 570
BsgI	GTGCAG	1 cut(s)	569
Bsh1236I	CGCG	1 cut(s)	26
BshFI	GGCC	2 cut(s)	328, 345
BslI	CCNNNNNNNGG	1 cut(s)	579
BsmAI	GTCTC	3 cut(s)	10, 115, 673
BsmBI	CGTCTC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	222
BsnI	GGCC	2 cut(s)	328, 345
Bsp119I	TTCGAA	1 cut(s)	225
Bsp143I	GATC	4 cut(s)	27, 652, 694, 821
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	2 cut(s)	328, 345
BspFNI	CGCG	1 cut(s)	26
BspHI	TCATGA	1 cut(s)	824
BspPI	GGATC	3 cut(s)	22, 647, 689
BspT104I	TTCGAA	1 cut(s)	225
BssMI	GATC	4 cut(s)	27, 652, 694, 821
Bst6I	CTCTTC	1 cut(s)	635
BstAPI	GCANNNNNTGC	1 cut(s)	546
BstBI	TTCGAA	1 cut(s)	225
BstC8I	GCNNGC	2 cut(s)	435, 703
BstDEI	CTNAG	2 cut(s)	41, 786
BstF5I	GGATG	2 cut(s)	198, 325
BstFNI	CGCG	1 cut(s)	26
BstKTI	GATC	4 cut(s)	30, 655, 697, 824
BstMAI	GTCTC	3 cut(s)	10, 115, 673
BstMBI	GATC	4 cut(s)	27, 652, 694, 821
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 546, 589
BstNSI	RCATGY	2 cut(s)	437, 596
BstUI	CGCG	1 cut(s)	26
BstV1I	GCAGC	2 cut(s)	126, 570
BstXI	CCANNNNNNTGG	1 cut(s)	258
BsuRI	GGCC	2 cut(s)	328, 345
BtsCI	GGATG	2 cut(s)	198, 325
Cac8I	GCNNGC	2 cut(s)	435, 703
CciI	TCATGA	1 cut(s)	824
Csp6I	GTAC	1 cut(s)	460
CviJI	RGCY	8 cut(s)	5, 83, 139, 328, 345, 583, 649, 705
CviKI_1	RGCY	8 cut(s)	5, 83, 139, 328, 345, 583, 649, 705
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	2 cut(s)	41, 786
DpnI	GATC	4 cut(s)	29, 654, 696, 823
DpnII	GATC	4 cut(s)	27, 652, 694, 821
Eam1104I	CTCTTC	1 cut(s)	635
EarI	CTCTTC	1 cut(s)	635
Eco147I	AGGCCT	2 cut(s)	328, 345
Eco57I	CTGAAG	2 cut(s)	196, 618
EcoRI	GAATTC	1 cut(s)	659
EcoT22I	ATGCAT	1 cut(s)	435
Esp3I	CGTCTC	1 cut(s)	115
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FauI	CCCGC	1 cut(s)	31
Fnu4HI	GCNGC	2 cut(s)	140, 584
FokI	GGATG	2 cut(s)	185, 332
Fsp4HI	GCNGC	2 cut(s)	140, 584
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	2 cut(s)	140, 584
HaeIII	GGCC	2 cut(s)	328, 345
HinfI	GANTC	5 cut(s)	239, 564, 602, 754, 790
Hpy188I	TCNGA	1 cut(s)	215
Hpy188III	TCNNGA	4 cut(s)	66, 179, 656, 825
Hpy99I	CGWCG	1 cut(s)	719
HpyAV	CCTTC	4 cut(s)	318, 335, 359, 377
HpyCH4IV	ACGT	2 cut(s)	108, 672
HpyCH4V	TGCA	6 cut(s)	257, 357, 433, 549, 586, 731
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 546, 589
HpyF3I	CTNAG	2 cut(s)	41, 786
HpySE526I	ACGT	2 cut(s)	108, 672
Kzo9I	GATC	4 cut(s)	27, 652, 694, 821
LpnPI	CCDG	8 cut(s)	107, 216, 359, 442, 621, 663, 669, 711
Lsp1109I	GCAGC	2 cut(s)	126, 570
LweI	GCATC	2 cut(s)	420, 740
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	2 cut(s)	108, 672
MaeIII	GTNAC	2 cut(s)	51, 179
MalI	GATC	4 cut(s)	29, 654, 696, 823
MboI	GATC	4 cut(s)	27, 652, 694, 821
MboII	GAAGA	6 cut(s)	109, 202, 239, 404, 624, 652
MluCI	AATT	5 cut(s)	308, 352, 395, 479, 659
MnlI	CCTC	8 cut(s)	48, 62, 73, 283, 466, 580, 636, 815
Mph1103I	ATGCAT	1 cut(s)	435
MroXI	GAANNNNTTC	1 cut(s)	399
MseI	TTAA	4 cut(s)	315, 410, 482, 536
MslI	CAYNNNNRTG	2 cut(s)	591, 597
Mva1269I	GAATGC	1 cut(s)	222
MvnI	CGCG	1 cut(s)	26
MwoI	GCNNNNNNNGC	3 cut(s)	148, 546, 589
NdeII	GATC	4 cut(s)	27, 652, 694, 821
NmuCI	GTSAC	2 cut(s)	51, 179
NsiI	ATGCAT	1 cut(s)	435
NspI	RCATGY	2 cut(s)	437, 596
NspV	TTCGAA	1 cut(s)	225
PaeI	GCATGC	1 cut(s)	437
PagI	TCATGA	1 cut(s)	824
PceI	AGGCCT	2 cut(s)	328, 345
PctI	GAATGC	1 cut(s)	222
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	5 cut(s)	239, 564, 602, 754, 790
PflMI	CCANNNNNTGG	1 cut(s)	579
PkrI	GCNGC	2 cut(s)	141, 585
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
RseI	CAYNNNNRTG	2 cut(s)	591, 597
SaqAI	TTAA	4 cut(s)	315, 410, 482, 536
SatI	GCNGC	2 cut(s)	140, 584
Sau3AI	GATC	4 cut(s)	27, 652, 694, 821
SetI	ASST	7 cut(s)	111, 141, 294, 388, 675, 707, 728
SfaNI	GCATC	2 cut(s)	420, 740
SfuI	TTCGAA	1 cut(s)	225
SmiMI	CAYNNNNRTG	2 cut(s)	591, 597
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
SphI	GCATGC	1 cut(s)	437
Sse9I	AATT	5 cut(s)	308, 352, 395, 479, 659
SseBI	AGGCCT	2 cut(s)	328, 345
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	1 cut(s)	299
StuI	AGGCCT	2 cut(s)	328, 345
TaiI	ACGT	2 cut(s)	111, 675
TaqI	TCGA	4 cut(s)	133, 225, 242, 717
TasI	AATT	5 cut(s)	308, 352, 395, 479, 659
TfiI	GAWTC	5 cut(s)	239, 564, 602, 754, 790
Tru1I	TTAA	4 cut(s)	315, 410, 482, 536
Tru9I	TTAA	4 cut(s)	315, 410, 482, 536
TseFI	GTSAC	2 cut(s)	51, 179
TseI	GCWGC	2 cut(s)	139, 583
Tsp45I	GTSAC	2 cut(s)	51, 179
TspDTI	ATGAA	5 cut(s)	47, 392, 611, 615, 759
Van91I	CCANNNNNTGG	1 cut(s)	579
XapI	RAATTY	2 cut(s)	308, 659
XceI	RCATGY	2 cut(s)	437, 596
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	1 cut(s)	299
Zsp2I	ATGCAT	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.