Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007952

Physical Location & Seq

Genomic Coordinates Forward (+)

30148330 .. 30150556

Gene Structure 2227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGCTATCTCTGCGACACATTCGCAGATTCTGCCATTTTCCTTCCTCTGCAGCCACTGGTATTGCATATGTTTCAACAGAGTCCAATCAGATCCAGGGTTTGAAACCGCTCGAGGAACCTGCCCTTGTGAAGCTTAAATCTGAGCGAGACCCTGAGAAGCTATACAATCTCTTTAAAGCTAATGCCACTAACCGTTTGGTGATTGAAAATCGATTTGCTTTTGAAGATACGGTCTCTAGATTAGCTGGGGCAGGTCGGCTTGATTTCATTGAGGATCTGCTTGAGCATCAGAAGACACTTCCACAAGGTAGGCGTGAGGGTTTCATTGTTAGGATTATAATGTTGTATGGCAAGGCTGGAATGACGAAGCAAGCACTTGATACTTTCTTCAATATGGATTTATACGGTTGCAAAAGATCTGTTAAGTCCTTCAATGCCGCTCTTCAAGTCTTATCTTTCAATCCTGATCTCCACACCATCTGGGAGTTCCTTCACGACGCCCCATCGAAGTATGGCATTGATATTGATGCGGTTTCTTTTAACATTGCCATTAAATCTTTCTGTGAGCTGGGTATTCTTGACGGGGCCTATATGGCAATGAGGGAGATGGAGAAATCAGGGTTAACACCAGATGTAGTTACATATACTACACTTATATCGGCGTTATACAAGCACGAGAGGTGTGTGATTGGAAATGGATTGTGGAACCTTATGGTCCTCAAGGGCTGTAAGCCGAACCTCACCACTTTTAATGTTAGGATTCAGTTTTTAGTGAATAGGAGACGAGCTTGGGATGCAAATGATCTGTTGCTGTTGATGCCTAAACTCCAGGTGGAACCGGACAGCATAACATATAACATGGTTATCAAAGGGTTTTTCCTTGCGAGGTTCCCTGACATGGCGGAAAGAGTTTATACAGCGATGCATGGTAAGGGGTACAAACCCAATTTGAAGATATACCAGACGATGATTCACTATTTGTGCAAGGCAGGAAATTTTGATTTGGCTTATACAATGTGCAAGGATTGTATGAGAAAGAAGTGGTACCCAAACTTGGACACAGTTGAGATGTTGCTCAAAGGGCTTGTGAAAAAGGGGCAGCTTGATCAGGCTAAGTCGATCATGGAGTTAGTTCACAGAAGAGTACCTCCTTTCAGGTCAAAACAGTTGCTCTCCCTTAAGTCCATTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

397

Amino Acids

45.51

Weight (kDa)

9.4

Isoelectric Point (pI)

35.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	176 - 224	2.6e-12	PPR repeat family
PPR_3	PF13812	200 - 260	1.9e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	249 - 292	2.5e-06	PPR repeat family
PPR_2	PF13041	315 - 364	2.6e-06	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80150 AT1G80150
fragaria_vesca	FvH4_6g30020 FvH4_6g30020 FvH4_6g30020 FvH4_6g30020 FvH4_6g30020 FvH4_6g30020
malus_domestica	MD00G1100500.v1.1 MD17G1208400.v1.1
prunus_persica	Prupe.3G083000_v2.0.a1
pyrus_communis	pycom09g13930 pycom17g21110
rosa_chinensis	RchiOBHm_Chr2g0136051
rosa_laevigata	RLG00000019499
rosa_multiflora	Rmu_sc0002986.1_g000007 Rmu_sc0039038.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108620
rosa_rugosa	Rorug02G0327800
rosa_samantha	Rh2AG379600 Rh2BG386100 Rh2CG365500 Rh2DG402400
rosa_wichuraiana	Rw2G030940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	338
Acc36I	ACCTGC	2 cut(s)	127, 242
Acc65I	GGTACC	1 cut(s)	1044
AccB1I	GGYRCC	1 cut(s)	1044
AccBSI	CCGCTC	2 cut(s)	109, 440
AciI	CCGC	4 cut(s)	107, 438, 530, 902
AclWI	GGATC	2 cut(s)	85, 282
AcsI	RAATTY	1 cut(s)	994
AcyI	GRCGYC	1 cut(s)	498
AfaI	GTAC	3 cut(s)	938, 1046, 1146
AfiI	CCNNNNNNNGG	2 cut(s)	898, 1054
AflII	CTTAAG	1 cut(s)	1178
AgsI	TTSAA	9 cut(s)	75, 103, 206, 224, 391, 433, 446, 460, 952
AjnI	CCWGG	2 cut(s)	93, 828
AluBI	AGCT	7 cut(s)	133, 160, 179, 245, 568, 788, 1102
AluI	AGCT	7 cut(s)	133, 160, 179, 245, 568, 788, 1102
Alw26I	GTCTC	3 cut(s)	141, 238, 775
AlwI	GGATC	2 cut(s)	85, 282
AlwNI	CAGNNNCTG	2 cut(s)	30, 56
Ama87I	CYCGRG	1 cut(s)	110
AoxI	GGCC	1 cut(s)	585
ApeKI	GCWGC	2 cut(s)	50, 1099
ApoI	RAATTY	1 cut(s)	994
Asp718I	GGTACC	1 cut(s)	1044
AspS9I	GGNCC	2 cut(s)	585, 715
AsuHPI	GGTGA	2 cut(s)	211, 733
AvaI	CYCGRG	1 cut(s)	110
AvaII	GGWCC	1 cut(s)	715
BanI	GGYRCC	1 cut(s)	1044
BauI	CACGAG	1 cut(s)	674
BbsI	GAAGAC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	62, 1111
BccI	CCATC	3 cut(s)	485, 511, 601
BcgI	CGANNNNNNTGC	2 cut(s)	101, 135
BciT130I	CCWGG	2 cut(s)	95, 830
BclI	TGATCA	1 cut(s)	1105
BcoDI	GTCTC	3 cut(s)	141, 238, 775
BfaI	CTAG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	48
BfrI	CTTAAG	1 cut(s)	1178
BfuAI	ACCTGC	2 cut(s)	127, 242
BglI	GCCNNNNNGGC	1 cut(s)	593
BglII	AGATCT	1 cut(s)	416
BisI	GCNGC	3 cut(s)	51, 438, 1100
BlsI	GCNGC	3 cut(s)	52, 439, 1101
Bme1390I	CCNGG	2 cut(s)	95, 830
Bme18I	GGWCC	1 cut(s)	715
BmeT110I	CYCGRG	1 cut(s)	110
BmgT120I	GGNCC	2 cut(s)	585, 715
BmiI	GGNNCC	6 cut(s)	117, 586, 707, 837, 890, 1046
BmrFI	CCNGG	2 cut(s)	95, 830
BmsI	GCATC	5 cut(s)	295, 517, 784, 807, 912
BpiI	GAAGAC	1 cut(s)	299
BpmI	CTGGAG	1 cut(s)	812
BpuEI	CTTGAG	2 cut(s)	302, 704
Bsa29I	ATCGAT	1 cut(s)	211
BsaHI	GRCGYC	1 cut(s)	498
BsaI	GGTCTC	2 cut(s)	141, 238
BsaJI	CCNNGG	1 cut(s)	94
BsaWI	WCCGGW	1 cut(s)	838
Bsc4I	CCNNNNNNNGG	2 cut(s)	898, 1054
Bse1I	ACTGG	1 cut(s)	61
Bse3DI	GCAATG	2 cut(s)	543, 603
BseBI	CCWGG	2 cut(s)	95, 830
BseCI	ATCGAT	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	94
BseGI	GGATG	1 cut(s)	799
BseLI	CCNNNNNNNGG	2 cut(s)	898, 1054
BseMI	GCAATG	2 cut(s)	543, 603
BseMII	CTCAG	2 cut(s)	132, 144
BseNI	ACTGG	1 cut(s)	61
BseXI	GCAGC	2 cut(s)	62, 1111
BseYI	CCCAGC	2 cut(s)	245, 568
BshFI	GGCC	1 cut(s)	587
BshNI	GGYRCC	1 cut(s)	1044
BshVI	ATCGAT	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	110
BsiSI	CCGG	1 cut(s)	839
BslI	CCNNNNNNNGG	2 cut(s)	898, 1054
BsmAI	GTCTC	3 cut(s)	141, 238, 775
BsmBI	CGTCTC	1 cut(s)	775
BsnI	GGCC	1 cut(s)	587
Bso31I	GGTCTC	2 cut(s)	141, 238
BsoBI	CYCGRG	1 cut(s)	110
Bsp143I	GATC	7 cut(s)	90, 274, 416, 466, 802, 1105, 1119
BspACI	CCGC	4 cut(s)	107, 438, 530, 902
BspANI	GGCC	1 cut(s)	587
BspCNI	CTCAG	2 cut(s)	133, 145
BspDI	ATCGAT	1 cut(s)	211
BspLI	GGNNCC	6 cut(s)	117, 586, 707, 837, 890, 1046
BspMAI	CTGCAG	1 cut(s)	52
BspMI	ACCTGC	2 cut(s)	127, 242
BspPI	GGATC	2 cut(s)	85, 282
BspQI	GCTCTTC	1 cut(s)	447
BspT107I	GGYRCC	1 cut(s)	1044
BspTI	CTTAAG	1 cut(s)	1178
BspTNI	GGTCTC	2 cut(s)	141, 238
BsrBI	CCGCTC	2 cut(s)	109, 440
BsrDI	GCAATG	2 cut(s)	543, 603
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	94
BssMI	GATC	7 cut(s)	90, 274, 416, 466, 802, 1105, 1119
BssNI	GRCGYC	1 cut(s)	498
BssSI	CACGAG	1 cut(s)	674
Bst2BI	CACGAG	1 cut(s)	674
Bst2UI	CCWGG	2 cut(s)	95, 830
Bst4CI	ACNGT	5 cut(s)	194, 232, 407, 1063, 1167
Bst6I	CTCTTC	2 cut(s)	447, 1135
BstACI	GRCGYC	1 cut(s)	498
BstAFI	CTTAAG	1 cut(s)	1178
BstAPI	GCANNNNNTGC	1 cut(s)	30
BstC8I	GCNNGC	1 cut(s)	372
BstDEI	CTNAG	3 cut(s)	141, 153, 1113
BstF5I	GGATG	1 cut(s)	799
BstKTI	GATC	7 cut(s)	93, 277, 419, 469, 805, 1108, 1122
BstMAI	GTCTC	3 cut(s)	141, 238, 775
BstMBI	GATC	7 cut(s)	90, 274, 416, 466, 802, 1105, 1119
BstMWI	GCNNNNNNNGC	6 cut(s)	10, 30, 593, 794, 817, 1081
BstNI	CCWGG	2 cut(s)	95, 830
BstSCI	CCNGG	2 cut(s)	93, 828
BstSFI	CTRYAG	1 cut(s)	48
BstV1I	GCAGC	2 cut(s)	62, 1111
BstV2I	GAAGAC	1 cut(s)	299
BstX2I	RGATCY	3 cut(s)	90, 274, 416
BstYI	RGATCY	3 cut(s)	90, 274, 416
Bsu15I	ATCGAT	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	587
BsuTUI	ATCGAT	1 cut(s)	211
BtgZI	GCGATG	1 cut(s)	935
BtsCI	GGATG	1 cut(s)	799
BtsIMutI	CAGTG	1 cut(s)	54
BveI	ACCTGC	2 cut(s)	127, 242
Cac8I	GCNNGC	1 cut(s)	372
CaiI	CAGNNNCTG	2 cut(s)	30, 56
Cfr13I	GGNCC	2 cut(s)	585, 715
ClaI	ATCGAT	1 cut(s)	211
CseI	GACGC	1 cut(s)	506
Csp6I	GTAC	3 cut(s)	937, 1045, 1145
CspCI	CAANNNNNGTGG	2 cut(s)	43, 78
CviAII	CATG	4 cut(s)	859, 898, 926, 1123
CviQI	GTAC	3 cut(s)	937, 1045, 1145
DdeI	CTNAG	3 cut(s)	141, 153, 1113
DpnI	GATC	7 cut(s)	92, 276, 418, 468, 804, 1107, 1121
DpnII	GATC	7 cut(s)	90, 274, 416, 466, 802, 1105, 1119
DraI	TTTAAA	1 cut(s)	175
Eam1104I	CTCTTC	2 cut(s)	447, 1135
EarI	CTCTTC	2 cut(s)	447, 1135
EciI	GGCGGA	1 cut(s)	917
Eco31I	GGTCTC	2 cut(s)	141, 238
Eco47I	GGWCC	1 cut(s)	715
Eco88I	CYCGRG	1 cut(s)	110
EcoO109I	RGGNCCY	1 cut(s)	585
EcoRII	CCWGG	2 cut(s)	93, 828
EcoT22I	ATGCAT	1 cut(s)	927
Esp3I	CGTCTC	1 cut(s)	775
FaeI	CATG	4 cut(s)	862, 901, 929, 1126
FatI	CATG	4 cut(s)	858, 897, 925, 1122
FauNDI	CATATG	1 cut(s)	67
FbaI	TGATCA	1 cut(s)	1105
Fnu4HI	GCNGC	3 cut(s)	51, 438, 1100
FokI	GGATG	1 cut(s)	806
Fsp4HI	GCNGC	3 cut(s)	51, 438, 1100
FspBI	CTAG	1 cut(s)	237
GluI	GCNGC	3 cut(s)	51, 438, 1100
GsaI	CCCAGC	2 cut(s)	249, 572
GsuI	CTGGAG	1 cut(s)	812
HaeIII	GGCC	1 cut(s)	587
HapII	CCGG	1 cut(s)	839
HgaI	GACGC	1 cut(s)	506
Hin1I	GRCGYC	1 cut(s)	498
Hin1II	CATG	4 cut(s)	862, 901, 929, 1126
HincII	GTYRAC	1 cut(s)	624
HindII	GTYRAC	1 cut(s)	624
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	4 cut(s)	27, 80, 760, 970
HpaI	GTTAAC	1 cut(s)	624
HpaII	CCGG	1 cut(s)	839
HphI	GGTGA	2 cut(s)	211, 733
Hpy166II	GTNNAC	2 cut(s)	624, 1135
Hpy188I	TCNGA	3 cut(s)	90, 142, 291
Hpy188III	TCNNGA	4 cut(s)	237, 464, 494, 578
Hpy8I	GTNNAC	2 cut(s)	624, 1135
Hpy99I	CGWCG	1 cut(s)	500
HpyAV	CCTTC	3 cut(s)	51, 439, 500
HpyCH4III	ACNGT	5 cut(s)	194, 232, 407, 1063, 1167
HpyCH4V	TGCA	7 cut(s)	50, 65, 411, 797, 925, 984, 1020
HpyF10VI	GCNNNNNNNGC	6 cut(s)	10, 30, 593, 794, 817, 1081
HpyF3I	CTNAG	3 cut(s)	141, 153, 1113
Hsp92I	GRCGYC	1 cut(s)	498
Hsp92II	CATG	4 cut(s)	862, 901, 929, 1126
KpnI	GGTACC	1 cut(s)	1048
Ksp22I	TGATCA	1 cut(s)	1105
KspAI	GTTAAC	1 cut(s)	624
Kzo9I	GATC	7 cut(s)	90, 274, 416, 466, 802, 1105, 1119
LguI	GCTCTTC	1 cut(s)	447
Lsp1109I	GCAGC	2 cut(s)	62, 1111
LweI	GCATC	5 cut(s)	295, 517, 784, 807, 912
MaeI	CTAG	1 cut(s)	237
MaeIII	GTNAC	1 cut(s)	637
MalI	GATC	7 cut(s)	92, 276, 418, 468, 804, 1107, 1121
MbiI	CCGCTC	2 cut(s)	109, 440
MboI	GATC	7 cut(s)	90, 274, 416, 466, 802, 1105, 1119
MboII	GAAGA	6 cut(s)	236, 304, 379, 434, 964, 1152
MflI	RGATCY	3 cut(s)	90, 274, 416
MluCI	AATT	2 cut(s)	946, 994
MlyI	GAGTC	1 cut(s)	89
Mph1103I	ATGCAT	1 cut(s)	927
MseI	TTAA	8 cut(s)	135, 174, 423, 540, 552, 623, 750, 1179
MspCI	CTTAAG	1 cut(s)	1178
MspI	CCGG	1 cut(s)	839
MspR9I	CCNGG	2 cut(s)	95, 830
MvaI	CCWGG	2 cut(s)	95, 830
MwoI	GCNNNNNNNGC	6 cut(s)	10, 30, 593, 794, 817, 1081
NdeI	CATATG	1 cut(s)	67
NdeII	GATC	7 cut(s)	90, 274, 416, 466, 802, 1105, 1119
NlaIII	CATG	4 cut(s)	862, 901, 929, 1126
NlaIV	GGNNCC	6 cut(s)	117, 586, 707, 837, 890, 1046
NsiI	ATGCAT	1 cut(s)	927
PaeR7I	CTCGAG	1 cut(s)	110
PciSI	GCTCTTC	1 cut(s)	447
PfeI	GAWTC	3 cut(s)	27, 760, 970
PkrI	GCNGC	3 cut(s)	52, 439, 1101
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PsiI	TTATAA	1 cut(s)	338
Psp6I	CCWGG	2 cut(s)	93, 828
PspFI	CCCAGC	2 cut(s)	245, 568
PspGI	CCWGG	2 cut(s)	93, 828
PspN4I	GGNNCC	6 cut(s)	117, 586, 707, 837, 890, 1046
PspPI	GGNCC	2 cut(s)	585, 715
PspXI	VCTCGAGB	1 cut(s)	110
PstI	CTGCAG	1 cut(s)	52
PstNI	CAGNNNCTG	2 cut(s)	30, 56
PsuI	RGATCY	3 cut(s)	90, 274, 416
RsaI	GTAC	3 cut(s)	938, 1046, 1146
RsaNI	GTAC	3 cut(s)	937, 1045, 1145
SapI	GCTCTTC	1 cut(s)	447
SaqAI	TTAA	8 cut(s)	135, 174, 423, 540, 552, 623, 750, 1179
SatI	GCNGC	3 cut(s)	51, 438, 1100
Sau3AI	GATC	7 cut(s)	90, 274, 416, 466, 802, 1105, 1119
Sau96I	GGNCC	2 cut(s)	585, 715
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	2 cut(s)	95, 830
SfaNI	GCATC	5 cut(s)	295, 517, 784, 807, 912
SfcI	CTRYAG	1 cut(s)	48
Sfr274I	CTCGAG	1 cut(s)	110
SinI	GGWCC	1 cut(s)	715
SlaI	CTCGAG	1 cut(s)	110
SmlI	CTYRAG	4 cut(s)	110, 281, 719, 1178
SmoI	CTYRAG	4 cut(s)	110, 281, 719, 1178
Sse9I	AATT	2 cut(s)	946, 994
SsiI	CCGC	4 cut(s)	107, 438, 530, 902
SspMI	CTAG	1 cut(s)	237
StyD4I	CCNGG	2 cut(s)	93, 828
TaaI	ACNGT	5 cut(s)	194, 232, 407, 1063, 1167
TaqI	TCGA	4 cut(s)	111, 211, 506, 1118
TasI	AATT	2 cut(s)	946, 994
TauI	GCSGC	1 cut(s)	440
TfiI	GAWTC	3 cut(s)	27, 760, 970
Tru1I	TTAA	8 cut(s)	135, 174, 423, 540, 552, 623, 750, 1179
Tru9I	TTAA	8 cut(s)	135, 174, 423, 540, 552, 623, 750, 1179
TscAI	CASTG	1 cut(s)	61
TseI	GCWGC	2 cut(s)	50, 1099
TspDTI	ATGAA	2 cut(s)	256, 313
TspRI	CASTG	1 cut(s)	61
Vha464I	CTTAAG	1 cut(s)	1178
VpaK11BI	GGWCC	1 cut(s)	715
XapI	RAATTY	1 cut(s)	994
XbaI	TCTAGA	1 cut(s)	236
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XhoI	CTCGAG	1 cut(s)	110
XspI	CTAG	1 cut(s)	237
Zsp2I	ATGCAT	1 cut(s)	927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.