Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002986.1

Orthogroup ID

OG0007952

Physical Location & Seq

Genomic Coordinates Forward (+)

23729 .. 24874

Gene Structure 1146 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002986.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atgaatgattgtgctgcagctgtgcccaagttggtttgcaatacaaaggccttggaggaacctgccctagttaagcttaaagcagagagggatcccgagaagctattccagctatttaaggccaatgcccacaatcggcttgtcattgagaaccgctttgcatttgaagacacggtggctcggttagctggagctcgccggtttgattacattgagcatttgcttgagcatcagaagactcttcctcaaggtcggcgagaagggttcattatgaggattataacattgtatggtaaggctgggatgactaagcatgctattgatactttttgtgatatgcatttatatggttgttctaggactgttaagtcatacaatgctacactcaaggttttgactcaaacttgtgatttaagagcaattgaggcatttgtgagtgatattccacagcaatttgacattcagttggacatatattcagttaatattgttatcaaggctttttgtgaaatggggattttgacgaaagcatatgtgatcatggtagagatggaaaagttgggaataagaccggatgtcattacgtatacaactctgatatcagcattttataaacataggcggtgggagattgctaatgggttatggaatcttatggtcctgaagaggtgtttacctaatcttgcaactttcaatgttcgaatccaatttttggttaatacaaagcgagcttgggaagctaatagagttttgaagatgatgcagaacattgggatagcacctgatgaagttacatttaatttggtgatcaaagggttttgccaggctgggaaacttgaaatggcaaaaagggtatattctgctctacatgacaagggatacaagcccaatgttaaaatttatcagaccatgattcattatctttgtagagaaagggattttgatctggcatatacattgtgtagagattccatgcagaaaaattggtatccaaatgtggataccattcatacattgctaaaaggcctgcggatgaaaagtcagcttggcaaggctaaggctattatgacgttggttcgtagaagggtgcctccatttccttcaaaacagttgagttctttgcaatccatactaaccaagagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

381

Amino Acids

43.93

Weight (kDa)

9.6

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80150 AT1G80150
fragaria_vesca	FvH4_6g30020 FvH4_6g30020 FvH4_6g30020 FvH4_6g30020 FvH4_6g30020 FvH4_6g30020
malus_domestica	MD00G1100500.v1.1 MD17G1208400.v1.1
prunus_persica	Prupe.3G083000_v2.0.a1
pyrus_communis	pycom09g13930 pycom17g21110
rosa_chinensis	RchiOBHm_Chr2g0136051
rosa_laevigata	RLG00000019499
rosa_multiflora	Rmu_sc0002986.1_g000007 Rmu_sc0039038.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108620
rosa_rugosa	Rorug02G0327800
rosa_samantha	Rh2AG379600 Rh2BG386100 Rh2CG365500 Rh2DG402400
rosa_wichuraiana	Rw2G030940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	281, 612
AasI	GACNNNNNNGTC	1 cut(s)	367
Acc36I	ACCTGC	1 cut(s)	70
AccB1I	GGYRCC	1 cut(s)	1087
AccB7I	CCANNNNNTGG	1 cut(s)	712
AccI	GTMKAC	1 cut(s)	587
AciI	CCGC	3 cut(s)	154, 622, 1030
AclWI	GGATC	2 cut(s)	86, 99
AcsI	RAATTY	1 cut(s)	897
AcuI	CTGAAG	1 cut(s)	683
AfiI	CCNNNNNNNGG	2 cut(s)	135, 712
AgsI	TTSAA	5 cut(s)	167, 694, 754, 839, 1104
AhdI	GACNNNNNGTC	1 cut(s)	575
AjnI	CCWGG	1 cut(s)	822
AluBI	AGCT	9 cut(s)	20, 76, 103, 112, 188, 194, 731, 740, 1045
AluI	AGCT	9 cut(s)	20, 76, 103, 112, 188, 194, 731, 740, 1045
Alw21I	GWGCWC	1 cut(s)	196
AlwI	GGATC	2 cut(s)	86, 99
Ama87I	CYCGRG	1 cut(s)	95
AoxI	GGCC	3 cut(s)	48, 120, 1024
ApeKI	GCWGC	2 cut(s)	14, 17
ApoI	RAATTY	1 cut(s)	897
Asp700I	GAANNNNTTC	1 cut(s)	104
AspS9I	GGNCC	1 cut(s)	658
AsuHPI	GGTGA	1 cut(s)	817
AsuII	TTCGAA	1 cut(s)	700
AvaI	CYCGRG	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	658
BaeGI	GKGCMC	1 cut(s)	27
BamHI	GGATCC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	1087
BanII	GRGCYC	1 cut(s)	196
BbsI	GAAGAC	2 cut(s)	174, 242
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	29
BccI	CCATC	1 cut(s)	544
BciT130I	CCWGG	1 cut(s)	824
BciVI	GTATCC	3 cut(s)	872, 994, 999
BclI	TGATCA	2 cut(s)	537, 807
BfaI	CTAG	2 cut(s)	68, 357
BfmI	CTRYAG	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	70
BfuI	GTATCC	3 cut(s)	872, 994, 999
BisI	GCNGC	2 cut(s)	15, 18
BlsI	GCNGC	2 cut(s)	16, 19
Bme1390I	CCNGG	1 cut(s)	824
Bme18I	GGWCC	1 cut(s)	658
BmeRI	GACNNNNNGTC	1 cut(s)	575
BmeT110I	CYCGRG	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	658
BmiI	GGNNCC	3 cut(s)	60, 93, 1089
BmrFI	CCNGG	1 cut(s)	824
BmsI	GCATC	2 cut(s)	238, 750
BpiI	GAAGAC	2 cut(s)	174, 242
BpmI	CTGGAG	1 cut(s)	210
Bpu10I	CCTNAGC	1 cut(s)	1056
Bpu14I	TTCGAA	1 cut(s)	700
BpuEI	CTTGAG	3 cut(s)	231, 245, 371
BsaAI	YACGTR	1 cut(s)	585
BsaBI	GATNNNNATC	1 cut(s)	942
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	571
Bsc4I	CCNNNNNNNGG	2 cut(s)	135, 712
Bse118I	RCCGGY	1 cut(s)	198
Bse3DI	GCAATG	1 cut(s)	1013
Bse8I	GATNNNNATC	1 cut(s)	942
BseBI	CCWGG	1 cut(s)	824
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	3 cut(s)	309, 580, 1038
BseJI	GATNNNNATC	1 cut(s)	942
BseLI	CCNNNNNNNGG	2 cut(s)	135, 712
BseMI	GCAATG	1 cut(s)	1013
BseSI	GKGCMC	1 cut(s)	27
BseXI	GCAGC	1 cut(s)	29
BseYI	CCCAGC	2 cut(s)	299, 827
BshFI	GGCC	3 cut(s)	50, 122, 1026
BshNI	GGYRCC	1 cut(s)	1087
BsiHKAI	GWGCWC	1 cut(s)	196
BsiHKCI	CYCGRG	1 cut(s)	95
BsiSI	CCGG	2 cut(s)	199, 572
BslI	CCNNNNNNNGG	2 cut(s)	135, 712
BsnI	GGCC	3 cut(s)	50, 122, 1026
BsoBI	CYCGRG	1 cut(s)	95
Bsp119I	TTCGAA	1 cut(s)	700
Bsp1286I	GDGCHC	2 cut(s)	27, 196
Bsp143I	GATC	4 cut(s)	91, 537, 807, 943
BspACI	CCGC	3 cut(s)	154, 622, 1030
BspANI	GGCC	3 cut(s)	50, 122, 1026
BspLI	GGNNCC	3 cut(s)	60, 93, 1089
BspMAI	CTGCAG	1 cut(s)	19
BspMI	ACCTGC	1 cut(s)	70
BspPI	GGATC	2 cut(s)	86, 99
BspT104I	TTCGAA	1 cut(s)	700
BspT107I	GGYRCC	1 cut(s)	1087
BsrDI	GCAATG	1 cut(s)	1013
BsrFI	RCCGGY	1 cut(s)	198
BssAI	RCCGGY	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	4 cut(s)	91, 537, 807, 943
BssNAI	GTATAC	1 cut(s)	588
BssT1I	CCWWGG	1 cut(s)	51
Bst1107I	GTATAC	1 cut(s)	588
Bst2UI	CCWGG	1 cut(s)	824
Bst4CI	ACNGT	3 cut(s)	175, 364, 1110
Bst6I	CTCTTC	2 cut(s)	246, 659
BstBAI	YACGTR	1 cut(s)	585
BstBI	TTCGAA	1 cut(s)	700
BstC8I	GCNNGC	4 cut(s)	196, 315, 729, 1028
BstDEI	CTNAG	2 cut(s)	309, 1056
BstF5I	GGATG	3 cut(s)	309, 580, 1038
BstKTI	GATC	4 cut(s)	94, 540, 810, 946
BstMBI	GATC	4 cut(s)	91, 537, 807, 943
BstMWI	GCNNNNNNNGC	4 cut(s)	109, 185, 425, 737
BstNI	CCWGG	1 cut(s)	824
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	822
BstSFI	CTRYAG	1 cut(s)	15
BstSLI	GKGCMC	1 cut(s)	27
BstSNI	TACGTA	1 cut(s)	585
BstV1I	GCAGC	1 cut(s)	29
BstV2I	GAAGAC	2 cut(s)	174, 242
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BstZ17I	GTATAC	1 cut(s)	588
BsuI	GTATCC	3 cut(s)	872, 994, 999
BsuRI	GGCC	3 cut(s)	50, 122, 1026
BtsCI	GGATG	3 cut(s)	309, 580, 1038
BveI	ACCTGC	1 cut(s)	70
Cac8I	GCNNGC	4 cut(s)	196, 315, 729, 1028
Cfr10I	RCCGGY	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	658
CviAII	CATG	5 cut(s)	314, 541, 869, 910, 973
DdeI	CTNAG	2 cut(s)	309, 1056
DpnI	GATC	4 cut(s)	93, 539, 809, 945
DpnII	GATC	4 cut(s)	91, 537, 807, 943
DrdI	GACNNNNNNGTC	1 cut(s)	367
DriI	GACNNNNNGTC	1 cut(s)	575
DseDI	GACNNNNNNGTC	1 cut(s)	367
Eam1104I	CTCTTC	2 cut(s)	246, 659
Eam1105I	GACNNNNNGTC	1 cut(s)	575
EarI	CTCTTC	2 cut(s)	246, 659
Ecl136II	GAGCTC	1 cut(s)	194
Eco105I	TACGTA	1 cut(s)	585
Eco130I	CCWWGG	1 cut(s)	51
Eco147I	AGGCCT	2 cut(s)	50, 1026
Eco24I	GRGCYC	1 cut(s)	196
Eco32I	GATATC	1 cut(s)	600
Eco47I	GGWCC	1 cut(s)	658
Eco53kI	GAGCTC	1 cut(s)	194
Eco57I	CTGAAG	1 cut(s)	683
Eco88I	CYCGRG	1 cut(s)	95
EcoICRI	GAGCTC	1 cut(s)	194
EcoRII	CCWGG	1 cut(s)	822
EcoRV	GATATC	1 cut(s)	600
EcoT14I	CCWWGG	1 cut(s)	51
EcoT22I	ATGCAT	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	5 cut(s)	317, 544, 872, 913, 976
FatI	CATG	5 cut(s)	313, 540, 868, 909, 972
FauNDI	CATATG	1 cut(s)	532
FbaI	TGATCA	2 cut(s)	537, 807
FblI	GTMKAC	1 cut(s)	587
Fnu4HI	GCNGC	2 cut(s)	15, 18
FokI	GGATG	3 cut(s)	316, 587, 1045
FriOI	GRGCYC	1 cut(s)	196
Fsp4HI	GCNGC	2 cut(s)	15, 18
FspBI	CTAG	2 cut(s)	68, 357
GluI	GCNGC	2 cut(s)	15, 18
GsaI	CCCAGC	2 cut(s)	303, 831
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	3 cut(s)	50, 122, 1026
HapII	CCGG	2 cut(s)	199, 572
Hin1II	CATG	5 cut(s)	317, 544, 872, 913, 976
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	6 cut(s)	238, 397, 649, 702, 913, 968
HpaII	CCGG	2 cut(s)	199, 572
HphI	GGTGA	1 cut(s)	817
Hpy166II	GTNNAC	2 cut(s)	588, 674
Hpy188I	TCNGA	3 cut(s)	234, 597, 906
Hpy188III	TCNNGA	2 cut(s)	95, 661
Hpy8I	GTNNAC	2 cut(s)	588, 674
HpyAV	CCTTC	3 cut(s)	254, 1077, 1110
HpyCH4III	ACNGT	3 cut(s)	175, 364, 1110
HpyCH4IV	ACGT	2 cut(s)	584, 1070
HpyCH4V	TGCA	8 cut(s)	17, 39, 161, 340, 686, 763, 976, 1123
HpyF10VI	GCNNNNNNNGC	4 cut(s)	109, 185, 425, 737
HpyF3I	CTNAG	2 cut(s)	309, 1056
HpySE526I	ACGT	2 cut(s)	584, 1070
Hsp92II	CATG	5 cut(s)	317, 544, 872, 913, 976
Ksp22I	TGATCA	2 cut(s)	537, 807
Kzo9I	GATC	4 cut(s)	91, 537, 807, 943
LmnI	GCTCC	1 cut(s)	191
Lsp1109I	GCAGC	1 cut(s)	29
LweI	GCATC	2 cut(s)	238, 750
MaeI	CTAG	2 cut(s)	68, 357
MaeII	ACGT	2 cut(s)	584, 1070
MaeIII	GTNAC	1 cut(s)	790
MalI	GATC	4 cut(s)	93, 539, 809, 945
MboI	GATC	4 cut(s)	91, 537, 807, 943
MboII	GAAGA	5 cut(s)	179, 233, 247, 676, 766
MfeI	CAATTG	1 cut(s)	420
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	2 cut(s)	27, 196
MluCI	AATT	6 cut(s)	420, 452, 707, 799, 897, 982
MlyI	GAGTC	2 cut(s)	232, 391
MmeI	TCCRAC	1 cut(s)	447
MnlI	CCTC	7 cut(s)	49, 81, 255, 267, 418, 660, 1101
Mph1103I	ATGCAT	1 cut(s)	342
MroXI	GAANNNNTTC	1 cut(s)	104
MseI	TTAA	9 cut(s)	72, 78, 117, 366, 413, 483, 717, 798, 894
MslI	CAYNNNNRTG	1 cut(s)	345
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	2 cut(s)	199, 572
MspR9I	CCNGG	1 cut(s)	824
MunI	CAATTG	1 cut(s)	420
MvaI	CCWGG	1 cut(s)	824
MwoI	GCNNNNNNNGC	4 cut(s)	109, 185, 425, 737
NdeI	CATATG	1 cut(s)	532
NdeII	GATC	4 cut(s)	91, 537, 807, 943
NlaIII	CATG	5 cut(s)	317, 544, 872, 913, 976
NlaIV	GGNNCC	3 cut(s)	60, 93, 1089
NsiI	ATGCAT	1 cut(s)	342
NspI	RCATGY	1 cut(s)	317
NspV	TTCGAA	1 cut(s)	700
PaeI	GCATGC	1 cut(s)	317
PceI	AGGCCT	2 cut(s)	50, 1026
PdmI	GAANNNNTTC	1 cut(s)	104
PfeI	GAWTC	4 cut(s)	649, 702, 913, 968
PflMI	CCANNNNNTGG	1 cut(s)	712
PkrI	GCNGC	2 cut(s)	16, 19
PleI	GAGTC	2 cut(s)	232, 391
PpsI	GAGTC	2 cut(s)	232, 391
Ppu21I	YACGTR	1 cut(s)	585
PsiI	TTATAA	2 cut(s)	281, 612
Psp124BI	GAGCTC	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	822
PspFI	CCCAGC	2 cut(s)	299, 827
PspGI	CCWGG	1 cut(s)	822
PspN4I	GGNNCC	3 cut(s)	60, 93, 1089
PspPI	GGNCC	1 cut(s)	658
PstI	CTGCAG	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	20
RseI	CAYNNNNRTG	1 cut(s)	345
SacI	GAGCTC	1 cut(s)	196
SaqAI	TTAA	9 cut(s)	72, 78, 117, 366, 413, 483, 717, 798, 894
SatI	GCNGC	2 cut(s)	15, 18
Sau3AI	GATC	4 cut(s)	91, 537, 807, 943
Sau96I	GGNCC	1 cut(s)	658
SchI	GAGTC	2 cut(s)	232, 391
ScrFI	CCNGG	1 cut(s)	824
SduI	GDGCHC	2 cut(s)	27, 196
SfaNI	GCATC	2 cut(s)	238, 750
SfcI	CTRYAG	1 cut(s)	15
SfuI	TTCGAA	1 cut(s)	700
SinI	GGWCC	1 cut(s)	658
SmiMI	CAYNNNNRTG	1 cut(s)	345
SmlI	CTYRAG	3 cut(s)	224, 246, 386
SmoI	CTYRAG	3 cut(s)	224, 246, 386
SnaBI	TACGTA	1 cut(s)	585
SphI	GCATGC	1 cut(s)	317
Sse9I	AATT	6 cut(s)	420, 452, 707, 799, 897, 982
SseBI	AGGCCT	2 cut(s)	50, 1026
SsiI	CCGC	3 cut(s)	154, 622, 1030
SspI	AATATT	1 cut(s)	487
SspMI	CTAG	2 cut(s)	68, 357
SstI	GAGCTC	1 cut(s)	196
StuI	AGGCCT	2 cut(s)	50, 1026
StyD4I	CCNGG	1 cut(s)	822
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	3 cut(s)	175, 364, 1110
TaiI	ACGT	2 cut(s)	587, 1073
TaqI	TCGA	1 cut(s)	700
TasI	AATT	6 cut(s)	420, 452, 707, 799, 897, 982
TfiI	GAWTC	4 cut(s)	649, 702, 913, 968
Tru1I	TTAA	9 cut(s)	72, 78, 117, 366, 413, 483, 717, 798, 894
Tru9I	TTAA	9 cut(s)	72, 78, 117, 366, 413, 483, 717, 798, 894
TseI	GCWGC	2 cut(s)	14, 17
TspDTI	ATGAA	6 cut(s)	17, 256, 801, 905, 998, 1049
Van91I	CCANNNNNTGG	1 cut(s)	712
VpaK11BI	GGWCC	1 cut(s)	658
XapI	RAATTY	1 cut(s)	897
XceI	RCATGY	1 cut(s)	317
XmiI	GTMKAC	1 cut(s)	587
XmnI	GAANNNNTTC	1 cut(s)	104
XspI	CTAG	2 cut(s)	68, 357
Zsp2I	ATGCAT	1 cut(s)	342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.