Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007952

Physical Location & Seq

Genomic Coordinates Reverse (-)

6149632 .. 6151644

Gene Structure 2013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G083000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGCTCTCTCTGCGAACCAGTCGCAGATTTTGTCATGCCGCCATTGCCATAACTTCGAATGGTTGTCCTGCAGCTGTGTCAAATCACGTTTTTGATACAAAGCCTTTGGAAGAACCTGCCCTCGTTAAGCTTAAAGCCGAGAGAGACCCCGAAAAGCTATTCCACCTGTTTAAGGCCAACGCTCACAATACGCTTGTCATTGAGAACCGATTTGCATTCGAAGATACGGTGTCTAGGCTAGCTGGAGCTCGAAGGTTTGATTACATTGAACATTTGCTTGAGCATCAGAAGACTCTTCCTCAAGGTCGGCGAGAAGGGTTCATTATGAGGATTATAACATTGTATGGTAAGGCTGGGATGACTAAGCATGCTATTGATACTTTTTGTGATATGCATTTATATGGTTGTTGTAGGACTGTTAAATCCTTCAACGCTGCACTCAAAGTTTTGACTCAAACCCGTGATTTAGGAGCCATTGAGGCATTTCTGAACGAGGTTCCACAGAAGTTTGACATTGAAGTGGACGTATTTTCGGTTAATATTCTTATCAAGGCTTTTTGTGAAATGGGAATTTTGGTTAAAGCATATCGGATCATGGTAGAGATGGAAAAGTTGGGAATAAGACCAGATGTCATTACATATACCACACTGATGTCAGCATTTTATAAGGAAAACTGGTGCGAGATTGGTAATGGTTTGTGGAATCTTATGGTGCTGAAGAGGTGTTTGCCTAATCTTGCAACTTTCAATGTTAGAATCCAGTATTTGGTTAACAGAAGACGAGCATGGGAAGCTAACAAATTGATGGGTTTGATGCAGAATGTTGGGATAACACCTGATGAGGTTACATATAATTTGGTGATCAAAGGGTTTTTCCAGGCCAGATATCTTGAAATGGCCAAAAGGGTGTATTCTGCTCTACATGGAAAGGCATACAAGCCAAATATCAAAATTTATCAGACCATGATTCATTATCTTTGTAAAGGAGGGGATTTTGATTTGGCATATACTATGTGTAAAGACTGCATGCAAAAGAATTGGTATCCGAATGTGGATACCATTCATACATTGCTTGAAGGCCTAAAGAGGGGCAAGCAGCTTGGTAAGGCTAAGGCAATCATGATGTTGGTTCGGAAAAGGGTGCCTCCATTTTCTTCAAAACAATTGGGGGATTTACAAACCATACTGAACAAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

400

Amino Acids

45.8

Weight (kDa)

9.47

Isoelectric Point (pI)

39.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007952)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80150 AT1G80150
fragaria_vesca	FvH4_6g30020 FvH4_6g30020 FvH4_6g30020 FvH4_6g30020 FvH4_6g30020 FvH4_6g30020
malus_domestica	MD00G1100500.v1.1 MD17G1208400.v1.1
prunus_persica	Prupe.3G083000_v2.0.a1
pyrus_communis	pycom09g13930 pycom17g21110
rosa_chinensis	RchiOBHm_Chr2g0136051
rosa_laevigata	RLG00000019499
rosa_multiflora	Rmu_sc0002986.1_g000007 Rmu_sc0039038.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108620
rosa_rugosa	Rorug02G0327800
rosa_samantha	Rh2AG379600 Rh2BG386100 Rh2CG365500 Rh2DG402400
rosa_wichuraiana	Rw2G030940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	335, 666
Acc36I	ACCTGC	1 cut(s)	124
AccB1I	GGYRCC	1 cut(s)	1141
AccB7I	CCANNNNNTGG	1 cut(s)	766
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	1 cut(s)	599
AcoI	YGGCCR	1 cut(s)	897
AcsI	RAATTY	2 cut(s)	570, 951
AcuI	CTGAAG	1 cut(s)	737
AfiI	CCNNNNNNNGG	3 cut(s)	172, 766, 1087
AgsI	TTSAA	7 cut(s)	269, 430, 518, 748, 893, 1076, 1158
AhdI	GACNNNNNGTC	1 cut(s)	629
AjnI	CCWGG	1 cut(s)	876
AluBI	AGCT	7 cut(s)	74, 130, 157, 242, 248, 794, 1099
AluI	AGCT	7 cut(s)	74, 130, 157, 242, 248, 794, 1099
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	138
AlwI	GGATC	1 cut(s)	599
AoxI	GGCC	4 cut(s)	174, 879, 897, 1078
ApeKI	GCWGC	3 cut(s)	71, 434, 1096
ApoI	RAATTY	2 cut(s)	570, 951
AsuHPI	GGTGA	1 cut(s)	871
AsuII	TTCGAA	2 cut(s)	56, 219
AsuNHI	GCTAGC	1 cut(s)	238
BalI	TGGCCA	1 cut(s)	899
BanI	GGYRCC	1 cut(s)	1141
BanII	GRGCYC	1 cut(s)	250
BbsI	GAAGAC	2 cut(s)	296, 784
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	3 cut(s)	83, 421, 1108
BccI	CCATC	2 cut(s)	598, 799
BciT130I	CCWGG	1 cut(s)	878
BciVI	GTATCC	2 cut(s)	1048, 1053
BclI	TGATCA	1 cut(s)	861
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	2 cut(s)	234, 239
BfmI	CTRYAG	1 cut(s)	69
BfuAI	ACCTGC	1 cut(s)	124
BfuI	GTATCC	2 cut(s)	1048, 1053
BglI	GCCNNNNNGGC	1 cut(s)	479
BisI	GCNGC	4 cut(s)	39, 72, 435, 1097
BlsI	GCNGC	4 cut(s)	40, 73, 436, 1098
Bme1390I	CCNGG	1 cut(s)	878
BmeRI	GACNNNNNGTC	1 cut(s)	629
BmiI	GGNNCC	3 cut(s)	472, 498, 1143
BmrFI	CCNGG	1 cut(s)	878
BmsI	GCATC	2 cut(s)	292, 804
BmtI	GCTAGC	1 cut(s)	242
BpiI	GAAGAC	2 cut(s)	296, 784
BpmI	CTGGAG	1 cut(s)	264
Bpu10I	CCTNAGC	1 cut(s)	1110
Bpu14I	TTCGAA	2 cut(s)	56, 219
BpuEI	CTTGAG	2 cut(s)	285, 299
BsaI	GGTCTC	1 cut(s)	138
Bsc4I	CCNNNNNNNGG	3 cut(s)	172, 766, 1087
Bse1I	ACTGG	3 cut(s)	18, 680, 760
Bse3DI	GCAATG	2 cut(s)	42, 1067
BseBI	CCWGG	1 cut(s)	878
BseGI	GGATG	1 cut(s)	363
BseLI	CCNNNNNNNGG	3 cut(s)	172, 766, 1087
BseMI	GCAATG	2 cut(s)	42, 1067
BseNI	ACTGG	3 cut(s)	18, 680, 760
BseXI	GCAGC	3 cut(s)	83, 421, 1108
BseYI	CCCAGC	1 cut(s)	353
BsgI	GTGCAG	1 cut(s)	420
BshFI	GGCC	4 cut(s)	176, 881, 899, 1080
BshNI	GGYRCC	1 cut(s)	1141
BsiHKAI	GWGCWC	1 cut(s)	250
BslI	CCNNNNNNNGG	3 cut(s)	172, 766, 1087
BsmAI	GTCTC	1 cut(s)	138
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	4 cut(s)	176, 881, 899, 1080
Bso31I	GGTCTC	1 cut(s)	138
Bsp119I	TTCGAA	2 cut(s)	56, 219
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	2 cut(s)	591, 861
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	4 cut(s)	176, 881, 899, 1080
BspHI	TCATGA	1 cut(s)	1119
BspLI	GGNNCC	3 cut(s)	472, 498, 1143
BspMAI	CTGCAG	1 cut(s)	73
BspMI	ACCTGC	1 cut(s)	124
BspOI	GCTAGC	1 cut(s)	242
BspPI	GGATC	1 cut(s)	599
BspT104I	TTCGAA	2 cut(s)	56, 219
BspT107I	GGYRCC	1 cut(s)	1141
BspTNI	GGTCTC	1 cut(s)	138
BsrDI	GCAATG	2 cut(s)	42, 1067
BsrI	ACTGG	3 cut(s)	18, 680, 760
BssMI	GATC	2 cut(s)	591, 861
Bst2UI	CCWGG	1 cut(s)	878
Bst4CI	ACNGT	2 cut(s)	229, 418
Bst6I	CTCTTC	2 cut(s)	300, 713
BstBI	TTCGAA	2 cut(s)	56, 219
BstC8I	GCNNGC	4 cut(s)	240, 369, 1028, 1094
BstDEI	CTNAG	2 cut(s)	363, 1110
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	363
BstKTI	GATC	2 cut(s)	594, 864
BstMAI	GTCTC	1 cut(s)	138
BstMBI	GATC	2 cut(s)	591, 861
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 44, 479, 791
BstNI	CCWGG	1 cut(s)	878
BstNSI	RCATGY	2 cut(s)	371, 1030
BstSCI	CCNGG	1 cut(s)	876
BstSFI	CTRYAG	1 cut(s)	69
BstV1I	GCAGC	3 cut(s)	83, 421, 1108
BstV2I	GAAGAC	2 cut(s)	296, 784
BsuI	GTATCC	2 cut(s)	1048, 1053
BsuRI	GGCC	4 cut(s)	176, 881, 899, 1080
BtsCI	GGATG	1 cut(s)	363
BtsIMutI	CAGTG	1 cut(s)	647
BveI	ACCTGC	1 cut(s)	124
Cac8I	GCNNGC	4 cut(s)	240, 369, 1028, 1094
CciI	TCATGA	1 cut(s)	1119
CviAII	CATG	8 cut(s)	35, 368, 595, 786, 923, 964, 1027, 1120
DdeI	CTNAG	2 cut(s)	363, 1110
DpnI	GATC	2 cut(s)	593, 863
DpnII	GATC	2 cut(s)	591, 861
DriI	GACNNNNNGTC	1 cut(s)	629
EaeI	YGGCCR	1 cut(s)	897
Eam1104I	CTCTTC	2 cut(s)	300, 713
Eam1105I	GACNNNNNGTC	1 cut(s)	629
EarI	CTCTTC	2 cut(s)	300, 713
Ecl136II	GAGCTC	1 cut(s)	248
Eco147I	AGGCCT	1 cut(s)	1080
Eco24I	GRGCYC	1 cut(s)	250
Eco31I	GGTCTC	1 cut(s)	138
Eco32I	GATATC	1 cut(s)	887
Eco53kI	GAGCTC	1 cut(s)	248
Eco57I	CTGAAG	1 cut(s)	737
EcoICRI	GAGCTC	1 cut(s)	248
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoRII	CCWGG	1 cut(s)	876
EcoRV	GATATC	1 cut(s)	887
EcoT22I	ATGCAT	1 cut(s)	396
EcoT38I	GRGCYC	1 cut(s)	250
FaeI	CATG	8 cut(s)	38, 371, 598, 789, 926, 967, 1030, 1123
FatI	CATG	8 cut(s)	34, 367, 594, 785, 922, 963, 1026, 1119
FbaI	TGATCA	1 cut(s)	861
Fnu4HI	GCNGC	4 cut(s)	39, 72, 435, 1097
FokI	GGATG	1 cut(s)	370
FriOI	GRGCYC	1 cut(s)	250
Fsp4HI	GCNGC	4 cut(s)	39, 72, 435, 1097
FspBI	CTAG	2 cut(s)	234, 239
GluI	GCNGC	4 cut(s)	39, 72, 435, 1097
GsaI	CCCAGC	1 cut(s)	357
GsuI	CTGGAG	1 cut(s)	264
HaeIII	GGCC	4 cut(s)	176, 881, 899, 1080
Hin1II	CATG	8 cut(s)	38, 371, 598, 789, 926, 967, 1030, 1123
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HindIII	AAGCTT	1 cut(s)	128
HinfI	GANTC	5 cut(s)	292, 451, 703, 756, 967
HpaI	GTTAAC	1 cut(s)	772
HphI	GGTGA	1 cut(s)	871
Hpy166II	GTNNAC	2 cut(s)	523, 772
Hpy188I	TCNGA	6 cut(s)	288, 489, 591, 960, 1047, 1134
Hpy188III	TCNNGA	2 cut(s)	890, 1120
Hpy8I	GTNNAC	2 cut(s)	523, 772
HpyAV	CCTTC	4 cut(s)	246, 308, 436, 1070
HpyCH4III	ACNGT	2 cut(s)	229, 418
HpyCH4IV	ACGT	2 cut(s)	87, 525
HpyCH4V	TGCA	8 cut(s)	71, 215, 394, 437, 740, 817, 1026, 1030
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 44, 479, 791
HpyF3I	CTNAG	2 cut(s)	363, 1110
HpySE526I	ACGT	2 cut(s)	87, 525
Hsp92II	CATG	8 cut(s)	38, 371, 598, 789, 926, 967, 1030, 1123
Ksp22I	TGATCA	1 cut(s)	861
KspAI	GTTAAC	1 cut(s)	772
Kzo9I	GATC	2 cut(s)	591, 861
LmnI	GCTCC	2 cut(s)	245, 470
Lsp1109I	GCAGC	3 cut(s)	83, 421, 1108
LweI	GCATC	2 cut(s)	292, 804
MaeI	CTAG	2 cut(s)	234, 239
MaeII	ACGT	2 cut(s)	87, 525
MaeIII	GTNAC	1 cut(s)	844
MalI	GATC	2 cut(s)	593, 863
MboI	GATC	2 cut(s)	591, 861
MboII	GAAGA	7 cut(s)	122, 233, 287, 301, 730, 789, 1146
MfeI	CAATTG	1 cut(s)	1163
MhlI	GDGCHC	1 cut(s)	250
MlsI	TGGCCA	1 cut(s)	899
MluCI	AATT	6 cut(s)	570, 800, 853, 951, 1036, 1163
MluNI	TGGCCA	1 cut(s)	899
MlyI	GAGTC	2 cut(s)	286, 445
Mox20I	TGGCCA	1 cut(s)	899
Mph1103I	ATGCAT	1 cut(s)	396
MscI	TGGCCA	1 cut(s)	899
MseI	TTAA	7 cut(s)	126, 132, 171, 420, 537, 579, 771
MslI	CAYNNNNRTG	3 cut(s)	399, 518, 650
Msp20I	TGGCCA	1 cut(s)	899
MspA1I	CMGCKG	1 cut(s)	74
MspR9I	CCNGG	1 cut(s)	878
MunI	CAATTG	1 cut(s)	1163
Mva1269I	GAATGC	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	878
MwoI	GCNNNNNNNGC	4 cut(s)	10, 44, 479, 791
NdeII	GATC	2 cut(s)	591, 861
NheI	GCTAGC	1 cut(s)	238
NlaIII	CATG	8 cut(s)	38, 371, 598, 789, 926, 967, 1030, 1123
NlaIV	GGNNCC	3 cut(s)	472, 498, 1143
NmeAIII	GCCGAG	1 cut(s)	163
NsiI	ATGCAT	1 cut(s)	396
NspI	RCATGY	2 cut(s)	371, 1030
NspV	TTCGAA	2 cut(s)	56, 219
PaeI	GCATGC	2 cut(s)	371, 1030
PagI	TCATGA	1 cut(s)	1119
PceI	AGGCCT	1 cut(s)	1080
PctI	GAATGC	1 cut(s)	215
PfeI	GAWTC	3 cut(s)	703, 756, 967
PflMI	CCANNNNNTGG	1 cut(s)	766
PkrI	GCNGC	4 cut(s)	40, 73, 436, 1098
PleI	GAGTC	2 cut(s)	286, 445
PpsI	GAGTC	2 cut(s)	286, 445
PsiI	TTATAA	2 cut(s)	335, 666
Psp124BI	GAGCTC	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	876
PspFI	CCCAGC	1 cut(s)	353
PspGI	CCWGG	1 cut(s)	876
PspN4I	GGNNCC	3 cut(s)	472, 498, 1143
PstI	CTGCAG	1 cut(s)	73
PvuII	CAGCTG	1 cut(s)	74
RseI	CAYNNNNRTG	3 cut(s)	399, 518, 650
SacI	GAGCTC	1 cut(s)	250
SaqAI	TTAA	7 cut(s)	126, 132, 171, 420, 537, 579, 771
SatI	GCNGC	4 cut(s)	39, 72, 435, 1097
Sau3AI	GATC	2 cut(s)	591, 861
SchI	GAGTC	2 cut(s)	286, 445
ScrFI	CCNGG	1 cut(s)	878
SduI	GDGCHC	1 cut(s)	250
SfaNI	GCATC	2 cut(s)	292, 804
SfcI	CTRYAG	1 cut(s)	69
SfuI	TTCGAA	2 cut(s)	56, 219
SmiMI	CAYNNNNRTG	3 cut(s)	399, 518, 650
SmlI	CTYRAG	2 cut(s)	278, 300
SmoI	CTYRAG	2 cut(s)	278, 300
SphI	GCATGC	2 cut(s)	371, 1030
Sse9I	AATT	6 cut(s)	570, 800, 853, 951, 1036, 1163
SseBI	AGGCCT	1 cut(s)	1080
SsiI	CCGC	1 cut(s)	39
SspI	AATATT	1 cut(s)	541
SspMI	CTAG	2 cut(s)	234, 239
SstI	GAGCTC	1 cut(s)	250
StuI	AGGCCT	1 cut(s)	1080
StyD4I	CCNGG	1 cut(s)	876
TaaI	ACNGT	2 cut(s)	229, 418
TaiI	ACGT	2 cut(s)	90, 528
TaqI	TCGA	3 cut(s)	56, 219, 250
TasI	AATT	6 cut(s)	570, 800, 853, 951, 1036, 1163
TauI	GCSGC	1 cut(s)	41
TfiI	GAWTC	3 cut(s)	703, 756, 967
Tru1I	TTAA	7 cut(s)	126, 132, 171, 420, 537, 579, 771
Tru9I	TTAA	7 cut(s)	126, 132, 171, 420, 537, 579, 771
TscAI	CASTG	1 cut(s)	654
TseI	GCWGC	3 cut(s)	71, 434, 1096
TspDTI	ATGAA	3 cut(s)	310, 959, 1052
TspRI	CASTG	1 cut(s)	654
Van91I	CCANNNNNTGG	1 cut(s)	766
XagI	CCTNNNNNAGG	1 cut(s)	170
XapI	RAATTY	2 cut(s)	570, 951
XceI	RCATGY	2 cut(s)	371, 1030
XspI	CTAG	2 cut(s)	234, 239
Zsp2I	ATGCAT	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.