Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003673

Physical Location & Seq

Genomic Coordinates Reverse (-)

30235164 .. 30238535

Gene Structure 3372 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80420.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGTCTCAGAAGCGAAATCTTCCTTCTTGGATGAGTTCTAGGGATCCCGAGATTACTCCGAGTAAGTCTCATTGTAAGAAGCCTAAGGATGAAGGACCAACCGAAGAGCACAACAGTAGAAATGCCCCTTCCAACAAGTCAGAACACGCCGAGCCAAGTTCAAATACCACTGAATTCTCTAAACTTATGGAAGGCGTTGTTTTTGTACTTTCGGGCTTTGTTAATCCTGAGAGGAGTACACTGAGGTCACAAGCCTTGACAATGGGAGCCACCTATCAACCTGACTGGAACGCTGGCTCTACCTTGTTGATTTGTGCTTTTCCTAACACTCCAAAGTTCCGTCAAGTTGAAACAAATGGTGGAACAATTATCTCAAAGGAGTGGATAACTGAGTGTTATGCGCAGAAGAAGTTGGTAGATATCGAGCAATACCTTATGCATGCTGGAAAACCATGGAGGAAAAGCAGTAGTCCCCAAGATGCTAATCGAGAAAAGAGAGAACACCTGTCTAAAAAACCAGAGAAGCAAGTAGAGAAAAAAACAGAAACAAGGGGAACACCATCTACCTCATCCAAGAATAGATCAGCTTGCAATCTTGTGAAAGAGCCATTTTTTGTTACAGAGGTGAAGAAATGGGCCAGGGATGACCTAAGTCAAACCATCTCATGGCTTGAGAGTCAGGAGGAAAAACCAGAACCAGGCGAAATCAAGCGAATAGCTGCGGAAGGAGTCTTAACCTGCTTACAAGACGCCATAGATTCTCTTGAACAGAAGCAGGACATTGGATCAGTTACAGAGCTATGGAGCTTTGTCCCTCGTGTAGTGAAGGAGCTTGGAAAGATGGAATCGTCTTCTAAAAAGGAAAATTCAACAGCATCAAAGGAAGAAGTTTGCAAACAAGCAAAGTCGTGGAAAAAGATCTACGAAGCTGAGCTAGCAAAACCGGGCGAAGATGAATCGACCTCTCGGGTTGCTTGTGGCTATGACAGTGATATGACCGTTGAGATGACTGAAGAAGAGATCGAACTTGCTTATAGGAACGTTTCTTTAGAGTGTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006266 GO:0006281 GO:0006284 GO:0006302 GO:0006303 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009628 GO:0009893 GO:0009987 GO:0010033 GO:0010385 GO:0010562 GO:0010604 GO:0010921 GO:0010922 GO:0019219 GO:0019220 GO:0019222 GO:0031323 GO:0031325 GO:0033554 GO:0034641 GO:0035303 GO:0035306 GO:0035510 GO:0036293 GO:0042221 GO:0042493 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045935 GO:0045937 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051336 GO:0051345 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070482 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901968 GO:1901969 GO:1901971 GO:1901972 GO:1902544 GO:1902546

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

BRCT PTCB-BRCT

Protein Analysis

353

Amino Acids

39.84

Weight (kDa)

5.95

Isoelectric Point (pI)

66.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRCT	PF00533	60 - 133	2.2e-09	BRCA1 C Terminus (BRCT) domain
BRCT_2	PF16589	62 - 144	1e-07	BRCT domain
PTCB-BRCT	PF12738	67 - 128	5.6e-07	twin BRCT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80420 AT1G80420 AT1G80420 AT1G80420 AT1G80420
fragaria_vesca	FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910
malus_domestica	MD17G1197800.v1.1
prunus_persica	Prupe.3G073900_v2.0.a1 Prupe.3G073900_v2.0.a1 Prupe.3G073900_v2.0.a1
pyrus_communis	pycom17g20270
rosa_chinensis	RchiOBHm_Chr2g0137421
rosa_laevigata	RLG00000019657
rosa_multiflora	Rmu_sc0000765.1_g000002 Rmu_ssc0000312.1_g000013
rosa_roxburghii	Rroxscaffold_2G00107070
rosa_rugosa	Rorug02G0342300 Rorug02G0342400 Rorug02G0342400 Rorug02G0342500
rosa_samantha	Rh2AG390400 Rh2BG397800 Rh2CG377700 Rh2DG413100
rosa_wichuraiana	Rw0G004550 Rw2G031990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	402
Acc36I	ACCTGC	1 cut(s)	746
AccB7I	CCANNNNNTGG	1 cut(s)	666
AciI	CCGC	1 cut(s)	722
AclI	AACGTT	1 cut(s)	1041
AclWI	GGATC	3 cut(s)	38, 51, 793
AcsI	RAATTY	2 cut(s)	173, 865
AcuI	CTGAAG	1 cut(s)	1032
AcyI	GRCGYC	1 cut(s)	750
AfaI	GTAC	2 cut(s)	207, 238
AfiI	CCNNNNNNNGG	2 cut(s)	666, 698
AgsI	TTSAA	4 cut(s)	162, 350, 767, 870
AjnI	CCWGG	2 cut(s)	638, 697
AluBI	AGCT	7 cut(s)	587, 719, 799, 807, 832, 929, 934
AluI	AGCT	7 cut(s)	587, 719, 799, 807, 832, 929, 934
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	2 cut(s)	9, 72
AlwI	GGATC	3 cut(s)	38, 51, 793
Ama87I	CYCGRG	2 cut(s)	47, 966
AoxI	GGCC	1 cut(s)	636
ApeKI	GCWGC	1 cut(s)	719
ApoI	RAATTY	2 cut(s)	173, 865
AspLEI	GCGC	1 cut(s)	403
AspS9I	GGNCC	2 cut(s)	95, 636
AsuC2I	CCSGG	1 cut(s)	945
AsuHPI	GGTGA	1 cut(s)	637
AsuNHI	GCTAGC	1 cut(s)	934
AvaI	CYCGRG	2 cut(s)	47, 966
AvaII	GGWCC	1 cut(s)	95
AxyI	CCTNAGG	1 cut(s)	84
BamHI	GGATCC	1 cut(s)	43
BauI	CACGAG	1 cut(s)	816
BbsI	GAAGAC	1 cut(s)	843
Bbv12I	GWGCWC	1 cut(s)	111
BbvI	GCAGC	1 cut(s)	706
BccI	CCATC	3 cut(s)	568, 668, 835
BciT130I	CCWGG	2 cut(s)	640, 699
BcnI	CCSGG	1 cut(s)	945
BcoDI	GTCTC	2 cut(s)	9, 72
BfaI	CTAG	2 cut(s)	39, 935
BfuAI	ACCTGC	1 cut(s)	746
BglII	AGATCT	1 cut(s)	918
BisI	GCNGC	1 cut(s)	720
BlpI	GCTNAGC	1 cut(s)	930
BlsI	GCNGC	1 cut(s)	721
Bme1390I	CCNGG	3 cut(s)	640, 699, 945
Bme18I	GGWCC	1 cut(s)	95
BmeT110I	CYCGRG	2 cut(s)	47, 966
BmgT120I	GGNCC	2 cut(s)	95, 636
BmiI	GGNNCC	2 cut(s)	45, 268
BmrFI	CCNGG	3 cut(s)	640, 699, 945
BmsI	GCATC	2 cut(s)	469, 884
BmtI	GCTAGC	1 cut(s)	938
BoxI	GACNNNNGTC	1 cut(s)	651
BpiI	GAAGAC	1 cut(s)	843
BplI	GAGNNNNNCTC	2 cut(s)	52, 84
Bpu1102I	GCTNAGC	1 cut(s)	930
BpuEI	CTTGAG	1 cut(s)	692
BpuMI	CCSGG	1 cut(s)	945
BsaBI	GATNNNNATC	1 cut(s)	483
BsaHI	GRCGYC	1 cut(s)	750
BsaJI	CCNNGG	2 cut(s)	452, 639
Bsc4I	CCNNNNNNNGG	2 cut(s)	666, 698
Bse1I	ACTGG	1 cut(s)	290
Bse21I	CCTNAGG	1 cut(s)	84
Bse8I	GATNNNNATC	1 cut(s)	483
BseBI	CCWGG	2 cut(s)	640, 699
BseDI	CCNNGG	2 cut(s)	452, 639
BseGI	GGATG	4 cut(s)	36, 94, 569, 649
BseJI	GATNNNNATC	1 cut(s)	483
BseLI	CCNNNNNNNGG	2 cut(s)	666, 698
BseMII	CTCAG	5 cut(s)	20, 219, 233, 381, 921
BseNI	ACTGG	1 cut(s)	290
BseRI	GAGGAG	1 cut(s)	247
BseXI	GCAGC	1 cut(s)	706
BshFI	GGCC	1 cut(s)	638
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	2 cut(s)	47, 966
BsiSI	CCGG	1 cut(s)	944
BslFI	GGGAC	2 cut(s)	456, 797
BslI	CCNNNNNNNGG	2 cut(s)	666, 698
BsmAI	GTCTC	2 cut(s)	9, 72
BsmFI	GGGAC	2 cut(s)	456, 797
BsnI	GGCC	1 cut(s)	638
BsoBI	CYCGRG	2 cut(s)	47, 966
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp143I	GATC	5 cut(s)	43, 581, 785, 918, 1020
Bsp1720I	GCTNAGC	1 cut(s)	930
Bsp19I	CCATGG	1 cut(s)	452
BspACI	CCGC	1 cut(s)	722
BspANI	GGCC	1 cut(s)	638
BspCNI	CTCAG	5 cut(s)	19, 220, 234, 382, 922
BspLI	GGNNCC	2 cut(s)	45, 268
BspMI	ACCTGC	1 cut(s)	746
BspOI	GCTAGC	1 cut(s)	938
BspPI	GGATC	3 cut(s)	38, 51, 793
BspQI	GCTCTTC	1 cut(s)	99
BsrI	ACTGG	1 cut(s)	290
BssECI	CCNNGG	2 cut(s)	452, 639
BssMI	GATC	5 cut(s)	43, 581, 785, 918, 1020
BssNI	GRCGYC	1 cut(s)	750
BssSI	CACGAG	1 cut(s)	816
BssT1I	CCWWGG	1 cut(s)	452
Bst2BI	CACGAG	1 cut(s)	816
Bst2UI	CCWGG	2 cut(s)	640, 699
Bst4CI	ACNGT	3 cut(s)	116, 989, 1000
Bst6I	CTCTTC	2 cut(s)	99, 1011
BstACI	GRCGYC	1 cut(s)	750
BstC8I	GCNNGC	4 cut(s)	295, 441, 589, 936
BstDEI	CTNAG	7 cut(s)	6, 84, 228, 242, 390, 650, 930
BstDSI	CCRYGG	1 cut(s)	452
BstF5I	GGATG	4 cut(s)	36, 94, 569, 649
BstHHI	GCGC	1 cut(s)	403
BstKTI	GATC	5 cut(s)	46, 584, 788, 921, 1023
BstMAI	GTCTC	2 cut(s)	9, 72
BstMBI	GATC	5 cut(s)	43, 581, 785, 918, 1020
BstMWI	GCNNNNNNNGC	1 cut(s)	935
BstNI	CCWGG	2 cut(s)	640, 699
BstNSI	RCATGY	1 cut(s)	443
BstPAI	GACNNNNGTC	1 cut(s)	651
BstSCI	CCNGG	3 cut(s)	638, 697, 943
BstV1I	GCAGC	1 cut(s)	706
BstV2I	GAAGAC	1 cut(s)	843
BstX2I	RGATCY	2 cut(s)	43, 918
BstYI	RGATCY	2 cut(s)	43, 918
Bsu36I	CCTNAGG	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	638
BtgI	CCRYGG	1 cut(s)	452
BtsCI	GGATG	4 cut(s)	36, 94, 569, 649
BtsIMutI	CAGTG	3 cut(s)	168, 239, 994
BveI	ACCTGC	1 cut(s)	746
Cac8I	GCNNGC	4 cut(s)	295, 441, 589, 936
CfoI	GCGC	1 cut(s)	403
Cfr13I	GGNCC	2 cut(s)	95, 636
CseI	GACGC	1 cut(s)	758
Csp6I	GTAC	2 cut(s)	206, 237
CviAII	CATG	3 cut(s)	440, 453, 666
CviQI	GTAC	2 cut(s)	206, 237
DdeI	CTNAG	7 cut(s)	6, 84, 228, 242, 390, 650, 930
DpnI	GATC	5 cut(s)	45, 583, 787, 920, 1022
DpnII	GATC	5 cut(s)	43, 581, 785, 918, 1020
Eam1104I	CTCTTC	2 cut(s)	99, 1011
EarI	CTCTTC	2 cut(s)	99, 1011
Eco130I	CCWWGG	1 cut(s)	452
Eco32I	GATATC	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	1032
Eco81I	CCTNAGG	1 cut(s)	84
Eco88I	CYCGRG	2 cut(s)	47, 966
EcoRI	GAATTC	1 cut(s)	173
EcoRII	CCWGG	2 cut(s)	638, 697
EcoRV	GATATC	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	452
EcoT22I	ATGCAT	1 cut(s)	441
ErhI	CCWWGG	1 cut(s)	452
FaeI	CATG	3 cut(s)	443, 456, 669
FaqI	GGGAC	2 cut(s)	456, 797
FatI	CATG	3 cut(s)	439, 452, 665
Fnu4HI	GCNGC	1 cut(s)	720
FokI	GGATG	4 cut(s)	43, 101, 556, 656
Fsp4HI	GCNGC	1 cut(s)	720
FspBI	CTAG	2 cut(s)	39, 935
FspI	TGCGCA	1 cut(s)	402
GlaI	GCGC	1 cut(s)	402
GluI	GCNGC	1 cut(s)	720
HaeIII	GGCC	1 cut(s)	638
HapII	CCGG	1 cut(s)	944
HgaI	GACGC	1 cut(s)	758
HhaI	GCGC	1 cut(s)	403
Hin1I	GRCGYC	1 cut(s)	750
Hin1II	CATG	3 cut(s)	443, 456, 669
Hin6I	GCGC	1 cut(s)	401
HinP1I	GCGC	1 cut(s)	401
HinfI	GANTC	5 cut(s)	676, 729, 758, 845, 956
HpaII	CCGG	1 cut(s)	944
HphI	GGTGA	1 cut(s)	637
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	3 cut(s)	9, 60, 142
Hpy188III	TCNNGA	5 cut(s)	47, 227, 488, 680, 764
Hpy8I	GTNNAC	1 cut(s)	239
HpyAV	CCTTC	6 cut(s)	33, 86, 138, 185, 719, 820
HpyCH4III	ACNGT	3 cut(s)	116, 989, 1000
HpyCH4IV	ACGT	1 cut(s)	1041
HpyCH4V	TGCA	3 cut(s)	439, 591, 894
HpyF10VI	GCNNNNNNNGC	1 cut(s)	935
HpyF3I	CTNAG	7 cut(s)	6, 84, 228, 242, 390, 650, 930
HpySE526I	ACGT	1 cut(s)	1041
Hsp92I	GRCGYC	1 cut(s)	750
Hsp92II	CATG	3 cut(s)	443, 456, 669
HspAI	GCGC	1 cut(s)	401
Kzo9I	GATC	5 cut(s)	43, 581, 785, 918, 1020
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	3 cut(s)	266, 804, 829
Lsp1109I	GCAGC	1 cut(s)	706
LweI	GCATC	2 cut(s)	469, 884
MaeI	CTAG	2 cut(s)	39, 935
MaeII	ACGT	1 cut(s)	1041
MaeIII	GTNAC	3 cut(s)	246, 616, 790
MalI	GATC	5 cut(s)	45, 583, 787, 920, 1022
MboI	GATC	5 cut(s)	43, 581, 785, 918, 1020
MboII	GAAGA	9 cut(s)	11, 116, 418, 640, 843, 896, 962, 1025, 1028
MflI	RGATCY	2 cut(s)	43, 918
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	3 cut(s)	173, 366, 865
MlyI	GAGTC	2 cut(s)	685, 738
MmeI	TCCRAC	1 cut(s)	156
MnlI	CCTC	8 cut(s)	225, 237, 450, 577, 616, 676, 825, 973
Mph1103I	ATGCAT	1 cut(s)	441
MseI	TTAA	2 cut(s)	222, 734
MspI	CCGG	1 cut(s)	944
MspR9I	CCNGG	3 cut(s)	640, 699, 945
MvaI	CCWGG	2 cut(s)	640, 699
MwoI	GCNNNNNNNGC	1 cut(s)	935
NciI	CCSGG	1 cut(s)	945
NcoI	CCATGG	1 cut(s)	452
NdeII	GATC	5 cut(s)	43, 581, 785, 918, 1020
NheI	GCTAGC	1 cut(s)	934
NlaIII	CATG	3 cut(s)	443, 456, 669
NlaIV	GGNNCC	2 cut(s)	45, 268
NmeAIII	GCCGAG	1 cut(s)	175
NmuCI	GTSAC	1 cut(s)	246
NsbI	TGCGCA	1 cut(s)	402
NsiI	ATGCAT	1 cut(s)	441
NspI	RCATGY	1 cut(s)	443
PaeI	GCATGC	1 cut(s)	443
PciSI	GCTCTTC	1 cut(s)	99
PfeI	GAWTC	3 cut(s)	758, 845, 956
PflMI	CCANNNNNTGG	1 cut(s)	666
PkrI	GCNGC	1 cut(s)	721
PleI	GAGTC	2 cut(s)	684, 737
PpsI	GAGTC	2 cut(s)	684, 737
PshAI	GACNNNNGTC	1 cut(s)	651
Psp1406I	AACGTT	1 cut(s)	1041
Psp6I	CCWGG	2 cut(s)	638, 697
PspGI	CCWGG	2 cut(s)	638, 697
PspN4I	GGNNCC	2 cut(s)	45, 268
PspPI	GGNCC	2 cut(s)	95, 636
PsrI	GAACNNNNNNTAC	2 cut(s)	547, 579
PsuI	RGATCY	2 cut(s)	43, 918
RsaI	GTAC	2 cut(s)	207, 238
RsaNI	GTAC	2 cut(s)	206, 237
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	222, 734
SatI	GCNGC	1 cut(s)	720
Sau3AI	GATC	5 cut(s)	43, 581, 785, 918, 1020
Sau96I	GGNCC	2 cut(s)	95, 636
SchI	GAGTC	2 cut(s)	685, 738
ScrFI	CCNGG	3 cut(s)	640, 699, 945
SduI	GDGCHC	1 cut(s)	111
SfaNI	GCATC	2 cut(s)	469, 884
SinI	GGWCC	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	671
SmoI	CTYRAG	1 cut(s)	671
SphI	GCATGC	1 cut(s)	443
Sse9I	AATT	3 cut(s)	173, 366, 865
SsiI	CCGC	1 cut(s)	722
SspMI	CTAG	2 cut(s)	39, 935
StyD4I	CCNGG	3 cut(s)	638, 697, 943
StyI	CCWWGG	1 cut(s)	452
TaaI	ACNGT	3 cut(s)	116, 989, 1000
TaiI	ACGT	1 cut(s)	1044
TaqI	TCGA	4 cut(s)	423, 487, 959, 1023
TasI	AATT	3 cut(s)	173, 366, 865
TatI	WGTACW	2 cut(s)	205, 236
TfiI	GAWTC	3 cut(s)	758, 845, 956
Tru1I	TTAA	2 cut(s)	222, 734
Tru9I	TTAA	2 cut(s)	222, 734
TscAI	CASTG	3 cut(s)	175, 246, 994
TseFI	GTSAC	1 cut(s)	246
TseI	GCWGC	1 cut(s)	719
Tsp45I	GTSAC	1 cut(s)	246
TspDTI	ATGAA	2 cut(s)	105, 969
TspGWI	ACGGA	1 cut(s)	329
TspRI	CASTG	3 cut(s)	175, 246, 994
Van91I	CCANNNNNTGG	1 cut(s)	666
VpaK11BI	GGWCC	1 cut(s)	95
XapI	RAATTY	2 cut(s)	173, 865
XceI	RCATGY	1 cut(s)	443
XspI	CTAG	2 cut(s)	39, 935
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.