Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003673

Physical Location & Seq

Genomic Coordinates Reverse (-)

42600281 .. 42620415

Gene Structure 20135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0342400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAAGAAGATTTTGCCGGCTTATCTGGATCCGAAATTGCAGCTTCAAGACCTACTTACTGGTGTATGTTTTGCCTCAGCAGGATCAGGATATGACCCTCTCACTGCCAAATTACTTTCTGTCTTGTCACTACCAGATCAATTAGACTTGTTTAAACAATACAAAAGCAAGATAACTGCAGCAGTTGGGAATGAAAGAACAGCCACTATACTGTCGAAAAGCATTTCCTTTCTTTCCATGGGAAGCAATGACTTTGCAATTAATTATTTTTCTACACCACTGAGGAGCCCTCACTATGACATTCCAGCTTATACAGATCTCATGATCGAATCAGCTTCAAATTTCTTGCAGGAACTTCATGCACTGGGAGCAAGAGTGATCGGAGTAATATGTATACCACCAATTGGGTGTTTGCCAGCACAGAGAACACTTAATGGAGGTATAAAGAGAGGGTGCTACGAAACCGGGAATCAAGCAGCAACCCTTTTCAACTCGAAGCTCTCCCACCTTATAGATTCCCTCAATGAGAGACTTCCAGAAGCACACCTCATGTACCTTGATAGCTACAGCCCTGCGCTTTCCCTGATCCAAAACCCTGCTCAATATGGATTTGAAGTGGTGGATAAAGGATGCTGTGGAACAGGAGATCTTGAAATTGGCCCTCTGTGTAACAAAGACACCCCGGGTACTTGTAACGATGTGTCCAAGTACATATTCTGGGATAGCTTTCATCCTACAGAGAAGGCATACAGGATCCTCACCTCTATTATTTTCAAAGGAGTTAAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006266 GO:0006281 GO:0006284 GO:0006302 GO:0006303 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009628 GO:0009893 GO:0009987 GO:0010033 GO:0010385 GO:0010562 GO:0010604 GO:0010921 GO:0010922 GO:0019219 GO:0019220 GO:0019222 GO:0031323 GO:0031325 GO:0033554 GO:0034641 GO:0035303 GO:0035306 GO:0035510 GO:0036293 GO:0042221 GO:0042493 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045935 GO:0045937 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051336 GO:0051345 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070482 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901968 GO:1901969 GO:1901971 GO:1901972 GO:1902544 GO:1902546

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

BRCT PTCB-BRCT

Protein Analysis

263

Amino Acids

28.77

Weight (kDa)

6.51

Isoelectric Point (pI)

31.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	4 - 254	2.2e-25	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80420 AT1G80420 AT1G80420 AT1G80420 AT1G80420
fragaria_vesca	FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910
malus_domestica	MD17G1197800.v1.1
prunus_persica	Prupe.3G073900_v2.0.a1 Prupe.3G073900_v2.0.a1 Prupe.3G073900_v2.0.a1
pyrus_communis	pycom17g20270
rosa_chinensis	RchiOBHm_Chr2g0137421
rosa_laevigata	RLG00000019657
rosa_multiflora	Rmu_sc0000765.1_g000002 Rmu_ssc0000312.1_g000013
rosa_roxburghii	Rroxscaffold_2G00107070
rosa_rugosa	Rorug02G0342300 Rorug02G0342400 Rorug02G0342400 Rorug02G0342500
rosa_samantha	Rh2AG390400 Rh2BG397800 Rh2CG377700 Rh2DG413100
rosa_wichuraiana	Rw0G004550 Rw2G031990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	404
AccI	GTMKAC	1 cut(s)	394
AclWI	GGATC	6 cut(s)	23, 36, 91, 580, 748, 761
AcsI	RAATTY	1 cut(s)	340
AfaI	GTAC	3 cut(s)	554, 688, 710
AfiI	CCNNNNNNNGG	1 cut(s)	404
AgsI	TTSAA	6 cut(s)	47, 339, 490, 614, 653, 775
AjuI	GAANNNNNNNTTGG	2 cut(s)	698, 730
AluBI	AGCT	6 cut(s)	43, 308, 335, 499, 564, 726
AluI	AGCT	6 cut(s)	43, 308, 335, 499, 564, 726
Alw26I	GTCTC	1 cut(s)	523
AlwI	GGATC	6 cut(s)	23, 36, 91, 580, 748, 761
Ama87I	CYCGRG	1 cut(s)	682
AoxI	GGCC	1 cut(s)	658
ApeKI	GCWGC	3 cut(s)	40, 179, 476
ApoI	RAATTY	1 cut(s)	340
AseI	ATTAAT	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	577
AspS9I	GGNCC	1 cut(s)	659
AsuC2I	CCSGG	3 cut(s)	466, 683, 684
AsuHPI	GGTGA	1 cut(s)	751
AvaI	CYCGRG	1 cut(s)	682
BamHI	GGATCC	2 cut(s)	28, 753
BanII	GRGCYC	1 cut(s)	290
BbvCI	CCTCAGC	1 cut(s)	76
BbvI	GCAGC	3 cut(s)	52, 191, 488
BcnI	CCSGG	3 cut(s)	466, 683, 684
BcoDI	GTCTC	1 cut(s)	523
BfmI	CTRYAG	3 cut(s)	177, 565, 735
BglII	AGATCT	2 cut(s)	316, 646
BisI	GCNGC	3 cut(s)	41, 180, 477
BlsI	GCNGC	3 cut(s)	42, 181, 478
Bme1390I	CCNGG	3 cut(s)	466, 683, 684
BmeT110I	CYCGRG	1 cut(s)	682
BmgT120I	GGNCC	1 cut(s)	659
BmiI	GGNNCC	3 cut(s)	30, 287, 755
BmrFI	CCNGG	3 cut(s)	466, 683, 684
BmrI	ACTGGG	1 cut(s)	374
BmsI	GCATC	1 cut(s)	620
BmuI	ACTGGG	1 cut(s)	374
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
Bpu10I	CCTNAGC	1 cut(s)	76
BpuMI	CCSGG	3 cut(s)	466, 683, 684
BsaJI	CCNNGG	3 cut(s)	237, 681, 682
BsaXI	ACNNNNNCTCC	2 cut(s)	360, 390
Bsc4I	CCNNNNNNNGG	1 cut(s)	404
Bse118I	RCCGGY	1 cut(s)	16
Bse1I	ACTGG	2 cut(s)	64, 369
Bse3DI	GCAATG	1 cut(s)	253
BseDI	CCNNGG	3 cut(s)	237, 681, 682
BseGI	GGATG	2 cut(s)	635, 730
BseLI	CCNNNNNNNGG	1 cut(s)	404
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	2 cut(s)	90, 272
BseNI	ACTGG	2 cut(s)	64, 369
BseRI	GAGGAG	1 cut(s)	298
BseXI	GCAGC	3 cut(s)	52, 191, 488
BshFI	GGCC	1 cut(s)	660
BsiHKCI	CYCGRG	1 cut(s)	682
BsiSI	CCGG	3 cut(s)	17, 465, 683
BslI	CCNNNNNNNGG	1 cut(s)	404
BsmAI	GTCTC	1 cut(s)	523
BsnI	GGCC	1 cut(s)	660
BsoBI	CYCGRG	1 cut(s)	682
Bsp1286I	GDGCHC	1 cut(s)	290
Bsp143I	GATC	9 cut(s)	28, 83, 136, 316, 324, 378, 585, 646, 753
Bsp19I	CCATGG	1 cut(s)	237
BspANI	GGCC	1 cut(s)	660
BspCNI	CTCAG	2 cut(s)	89, 273
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	3 cut(s)	30, 287, 755
BspMAI	CTGCAG	1 cut(s)	181
BspPI	GGATC	6 cut(s)	23, 36, 91, 580, 748, 761
BsrDI	GCAATG	1 cut(s)	253
BsrFI	RCCGGY	1 cut(s)	16
BsrI	ACTGG	2 cut(s)	64, 369
BssAI	RCCGGY	1 cut(s)	16
BssECI	CCNNGG	3 cut(s)	237, 681, 682
BssMI	GATC	9 cut(s)	28, 83, 136, 316, 324, 378, 585, 646, 753
BssNAI	GTATAC	1 cut(s)	395
BssT1I	CCWWGG	1 cut(s)	237
Bst1107I	GTATAC	1 cut(s)	395
Bst4CI	ACNGT	1 cut(s)	213
BstC8I	GCNNGC	2 cut(s)	18, 417
BstDEI	CTNAG	2 cut(s)	76, 281
BstDSI	CCRYGG	1 cut(s)	237
BstF5I	GGATG	2 cut(s)	635, 730
BstHHI	GCGC	1 cut(s)	577
BstKTI	GATC	9 cut(s)	31, 86, 139, 319, 327, 381, 588, 649, 756
BstMAI	GTCTC	1 cut(s)	523
BstMBI	GATC	9 cut(s)	28, 83, 136, 316, 324, 378, 585, 646, 753
BstMWI	GCNNNNNNNGC	1 cut(s)	368
BstSCI	CCNGG	3 cut(s)	464, 681, 682
BstSFI	CTRYAG	3 cut(s)	177, 565, 735
BstV1I	GCAGC	3 cut(s)	52, 191, 488
BstX2I	RGATCY	4 cut(s)	28, 316, 646, 753
BstYI	RGATCY	4 cut(s)	28, 316, 646, 753
BstZ17I	GTATAC	1 cut(s)	395
BsuRI	GGCC	1 cut(s)	660
BtgI	CCRYGG	1 cut(s)	237
BtsCI	GGATG	2 cut(s)	635, 730
BtsI	GCAGTG	1 cut(s)	102
BtsIMutI	CAGTG	3 cut(s)	102, 278, 362
Cac8I	GCNNGC	2 cut(s)	18, 417
CciI	TCATGA	1 cut(s)	321
CfoI	GCGC	1 cut(s)	577
Cfr10I	RCCGGY	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	659
Cfr9I	CCCGGG	1 cut(s)	682
Csp6I	GTAC	3 cut(s)	553, 687, 709
CviAII	CATG	4 cut(s)	238, 322, 359, 550
CviQI	GTAC	3 cut(s)	553, 687, 709
DdeI	CTNAG	2 cut(s)	76, 281
DpnI	GATC	9 cut(s)	30, 85, 138, 318, 326, 380, 587, 648, 755
DpnII	GATC	9 cut(s)	28, 83, 136, 316, 324, 378, 585, 646, 753
DraI	TTTAAA	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	237
Eco24I	GRGCYC	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	682
EcoT14I	CCWWGG	1 cut(s)	237
EcoT38I	GRGCYC	1 cut(s)	290
ErhI	CCWWGG	1 cut(s)	237
FaeI	CATG	4 cut(s)	241, 325, 362, 553
FalI	AAGNNNNNCTT	2 cut(s)	39, 71
FatI	CATG	4 cut(s)	237, 321, 358, 549
FblI	GTMKAC	1 cut(s)	394
Fnu4HI	GCNGC	3 cut(s)	41, 180, 477
FokI	GGATG	2 cut(s)	642, 717
FriOI	GRGCYC	1 cut(s)	290
Fsp4HI	GCNGC	3 cut(s)	41, 180, 477
GlaI	GCGC	1 cut(s)	576
GluI	GCNGC	3 cut(s)	41, 180, 477
HaeIII	GGCC	1 cut(s)	660
HapII	CCGG	3 cut(s)	17, 465, 683
HhaI	GCGC	1 cut(s)	577
Hin1II	CATG	4 cut(s)	241, 325, 362, 553
Hin6I	GCGC	1 cut(s)	575
HinP1I	GCGC	1 cut(s)	575
HinfI	GANTC	3 cut(s)	329, 469, 515
HpaII	CCGG	3 cut(s)	17, 465, 683
HphI	GGTGA	1 cut(s)	751
Hpy166II	GTNNAC	1 cut(s)	395
Hpy188I	TCNGA	2 cut(s)	33, 383
Hpy188III	TCNNGA	6 cut(s)	26, 47, 87, 322, 536, 650
Hpy8I	GTNNAC	1 cut(s)	395
HpyAV	CCTTC	1 cut(s)	736
HpyCH4III	ACNGT	1 cut(s)	213
HpyCH4V	TGCA	5 cut(s)	40, 179, 257, 349, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	368
HpyF3I	CTNAG	2 cut(s)	76, 281
Hsp92II	CATG	4 cut(s)	241, 325, 362, 553
HspAI	GCGC	1 cut(s)	575
KroI	GCCGGC	1 cut(s)	16
KroNI	GCCGGC	1 cut(s)	18
Kzo9I	GATC	9 cut(s)	28, 83, 136, 316, 324, 378, 585, 646, 753
LmnI	GCTCC	2 cut(s)	285, 368
Lsp1109I	GCAGC	3 cut(s)	52, 191, 488
LweI	GCATC	1 cut(s)	620
MaeIII	GTNAC	3 cut(s)	126, 668, 692
MalI	GATC	9 cut(s)	30, 85, 138, 318, 326, 380, 587, 648, 755
MboI	GATC	9 cut(s)	28, 83, 136, 316, 324, 378, 585, 646, 753
MboII	GAAGA	2 cut(s)	16, 19
MfeI	CAATTG	1 cut(s)	402
MflI	RGATCY	4 cut(s)	28, 316, 646, 753
MhlI	GDGCHC	1 cut(s)	290
MluCI	AATT	8 cut(s)	35, 110, 140, 258, 262, 340, 402, 654
MroNI	GCCGGC	1 cut(s)	16
MseI	TTAA	4 cut(s)	153, 261, 432, 783
MspI	CCGG	3 cut(s)	17, 465, 683
MspR9I	CCNGG	3 cut(s)	466, 683, 684
MssI	GTTTAAAC	1 cut(s)	154
MunI	CAATTG	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	368
NaeI	GCCGGC	1 cut(s)	18
NciI	CCSGG	3 cut(s)	466, 683, 684
NcoI	CCATGG	1 cut(s)	237
NdeII	GATC	9 cut(s)	28, 83, 136, 316, 324, 378, 585, 646, 753
NgoMIV	GCCGGC	1 cut(s)	16
NlaIII	CATG	4 cut(s)	241, 325, 362, 553
NlaIV	GGNNCC	3 cut(s)	30, 287, 755
NmuCI	GTSAC	1 cut(s)	126
PagI	TCATGA	1 cut(s)	321
PdiI	GCCGGC	1 cut(s)	18
PfeI	GAWTC	3 cut(s)	329, 469, 515
PflMI	CCANNNNNTGG	1 cut(s)	404
PkrI	GCNGC	3 cut(s)	42, 181, 478
PmeI	GTTTAAAC	1 cut(s)	154
PshBI	ATTAAT	1 cut(s)	261
PspN4I	GGNNCC	3 cut(s)	30, 287, 755
PspPI	GGNCC	1 cut(s)	659
PstI	CTGCAG	1 cut(s)	181
PsuI	RGATCY	4 cut(s)	28, 316, 646, 753
RsaI	GTAC	3 cut(s)	554, 688, 710
RsaNI	GTAC	3 cut(s)	553, 687, 709
SaqAI	TTAA	4 cut(s)	153, 261, 432, 783
SatI	GCNGC	3 cut(s)	41, 180, 477
Sau3AI	GATC	9 cut(s)	28, 83, 136, 316, 324, 378, 585, 646, 753
Sau96I	GGNCC	1 cut(s)	659
ScrFI	CCNGG	3 cut(s)	466, 683, 684
SduI	GDGCHC	1 cut(s)	290
SfaNI	GCATC	1 cut(s)	620
SfcI	CTRYAG	3 cut(s)	177, 565, 735
SmaI	CCCGGG	1 cut(s)	684
Sse9I	AATT	8 cut(s)	35, 110, 140, 258, 262, 340, 402, 654
StyD4I	CCNGG	3 cut(s)	464, 681, 682
StyI	CCWWGG	1 cut(s)	237
TaaI	ACNGT	1 cut(s)	213
TaqI	TCGA	3 cut(s)	215, 327, 494
TasI	AATT	8 cut(s)	35, 110, 140, 258, 262, 340, 402, 654
TatI	WGTACW	1 cut(s)	708
TfiI	GAWTC	3 cut(s)	329, 469, 515
Tru1I	TTAA	4 cut(s)	153, 261, 432, 783
Tru9I	TTAA	4 cut(s)	153, 261, 432, 783
TscAI	CASTG	3 cut(s)	109, 285, 369
TseFI	GTSAC	1 cut(s)	126
TseI	GCWGC	3 cut(s)	40, 179, 476
Tsp45I	GTSAC	1 cut(s)	126
TspDTI	ATGAA	4 cut(s)	17, 207, 347, 719
TspMI	CCCGGG	1 cut(s)	682
TspRI	CASTG	3 cut(s)	109, 285, 369
Van91I	CCANNNNNTGG	1 cut(s)	404
VspI	ATTAAT	1 cut(s)	261
XapI	RAATTY	1 cut(s)	340
XmaI	CCCGGG	1 cut(s)	682
XmiI	GTMKAC	1 cut(s)	394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.