Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000765.1

Orthogroup ID

OG0003673

Physical Location & Seq

Genomic Coordinates Reverse (-)

8401 .. 9943

Gene Structure 1543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000765.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgtctcattccaagaatggtgctaataagcccggcaaccgaaaccttccttcatgggtgagttcaagagacaatgagagtgagtctcctgaaaagaaaccaaatggggatggtgaaggtgaggaaaggaaggagggtcaaaagcccacgcaagggaaaaggcgcggaagcagcaagaattctggtgcatccagctcgggaacaacaaatgtgtccaaacttctggaaggggttgtgtttgtactatctggttttgttaatcctgagcgcagcattttacggtcacaggcgttggaaatgggagcagaatatcagcctgattggagttcagaatgcactctcttggtttgtgcgttttcaaacacccctaagtttcgacaagttgaggcagattgtggaactattgtttcaaaggaatggatatcagagtgttacacgcagaagaagcttgttgatatagaaagttaccttatgcatgctgggaaaccctggcgtaaaagcagtgtttcccaggacaacaggcaagaccagagattatcccggcctagtagatctaaaaagcaggatggagattctccttcaaaaccaactgcctctgcaactttaaaggtatgttttgacttgtttgatgtcctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006266 GO:0006281 GO:0006284 GO:0006302 GO:0006303 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009628 GO:0009893 GO:0009987 GO:0010033 GO:0010385 GO:0010562 GO:0010604 GO:0010921 GO:0010922 GO:0019219 GO:0019220 GO:0019222 GO:0031323 GO:0031325 GO:0033554 GO:0034641 GO:0035303 GO:0035306 GO:0035510 GO:0036293 GO:0042221 GO:0042493 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045935 GO:0045937 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051336 GO:0051345 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070482 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901968 GO:1901969 GO:1901971 GO:1901972 GO:1902544 GO:1902546

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

BRCT PTCB-BRCT

Protein Analysis

212

Amino Acids

23.39

Weight (kDa)

8.93

Isoelectric Point (pI)

57.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80420 AT1G80420 AT1G80420 AT1G80420 AT1G80420
fragaria_vesca	FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910
malus_domestica	MD17G1197800.v1.1
prunus_persica	Prupe.3G073900_v2.0.a1 Prupe.3G073900_v2.0.a1 Prupe.3G073900_v2.0.a1
pyrus_communis	pycom17g20270
rosa_chinensis	RchiOBHm_Chr2g0137421
rosa_laevigata	RLG00000019657
rosa_multiflora	Rmu_sc0000765.1_g000002 Rmu_ssc0000312.1_g000013
rosa_roxburghii	Rroxscaffold_2G00107070
rosa_rugosa	Rorug02G0342300 Rorug02G0342400 Rorug02G0342400 Rorug02G0342500
rosa_samantha	Rh2AG390400 Rh2BG397800 Rh2CG377700 Rh2DG413100
rosa_wichuraiana	Rw0G004550 Rw2G031990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	165
AciI	CCGC	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	178
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	2 cut(s)	152, 153
AgsI	TTSAA	4 cut(s)	66, 360, 411, 582
AjnI	CCWGG	2 cut(s)	488, 510
AluBI	AGCT	2 cut(s)	195, 448
AluI	AGCT	2 cut(s)	195, 448
Alw26I	GTCTC	3 cut(s)	9, 63, 90
Ama87I	CYCGRG	1 cut(s)	196
AoxI	GGCC	1 cut(s)	542
ApeKI	GCWGC	2 cut(s)	171, 270
ApoI	RAATTY	1 cut(s)	178
AspLEI	GCGC	2 cut(s)	165, 270
AsuC2I	CCSGG	2 cut(s)	33, 541
AsuHPI	GGTGA	3 cut(s)	70, 125, 131
AvaI	CYCGRG	1 cut(s)	196
BbvI	GCAGC	2 cut(s)	183, 282
BccI	CCATC	2 cut(s)	104, 560
BcgI	CGANNNNNNTGC	2 cut(s)	177, 211
BciT130I	CCWGG	2 cut(s)	490, 512
BcnI	CCSGG	2 cut(s)	33, 541
BcoDI	GTCTC	3 cut(s)	9, 63, 90
BfaI	CTAG	1 cut(s)	546
BglII	AGATCT	1 cut(s)	551
BisI	GCNGC	2 cut(s)	172, 271
BlsI	GCNGC	2 cut(s)	173, 272
Bme1390I	CCNGG	4 cut(s)	33, 490, 512, 541
BmeT110I	CYCGRG	1 cut(s)	196
BmrFI	CCNGG	4 cut(s)	33, 490, 512, 541
BmsI	GCATC	1 cut(s)	197
BplI	GAGNNNNNCTC	2 cut(s)	70, 102
Bpu10I	CCTNAGC	1 cut(s)	264
BpuMI	CCSGG	2 cut(s)	33, 541
BsaJI	CCNNGG	2 cut(s)	488, 510
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 153
BseBI	CCWGG	2 cut(s)	490, 512
BseDI	CCNNGG	2 cut(s)	488, 510
BseGI	GGATG	3 cut(s)	115, 188, 571
BseLI	CCNNNNNNNGG	2 cut(s)	152, 153
BseMII	CTCAG	1 cut(s)	255
BseXI	GCAGC	2 cut(s)	183, 282
BseYI	CCCAGC	1 cut(s)	479
Bsh1236I	CGCG	1 cut(s)	165
BshFI	GGCC	1 cut(s)	544
BsiHKCI	CYCGRG	1 cut(s)	196
BsiSI	CCGG	2 cut(s)	33, 541
BslI	CCNNNNNNNGG	2 cut(s)	152, 153
BsmAI	GTCTC	3 cut(s)	9, 63, 90
BsmI	GAATGC	1 cut(s)	338
BsnI	GGCC	1 cut(s)	544
BsoBI	CYCGRG	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	551
BspACI	CCGC	1 cut(s)	165
BspANI	GGCC	1 cut(s)	544
BspCNI	CTCAG	1 cut(s)	256
BspFNI	CGCG	1 cut(s)	165
BssECI	CCNNGG	2 cut(s)	488, 510
BssMI	GATC	1 cut(s)	551
Bst2UI	CCWGG	2 cut(s)	490, 512
Bst4CI	ACNGT	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	2 cut(s)	264, 369
BstF5I	GGATG	3 cut(s)	115, 188, 571
BstFNI	CGCG	1 cut(s)	165
BstHHI	GCGC	2 cut(s)	165, 270
BstKTI	GATC	1 cut(s)	554
BstMAI	GTCTC	3 cut(s)	9, 63, 90
BstMBI	GATC	1 cut(s)	551
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 445
BstNI	CCWGG	2 cut(s)	490, 512
BstNSI	RCATGY	1 cut(s)	479
BstSCI	CCNGG	4 cut(s)	31, 488, 510, 539
BstUI	CGCG	1 cut(s)	165
BstV1I	GCAGC	2 cut(s)	183, 282
BstX2I	RGATCY	1 cut(s)	551
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	551
BsuRI	GGCC	1 cut(s)	544
BtsCI	GGATG	3 cut(s)	115, 188, 571
BtsI	GCAGTG	1 cut(s)	508
BtsIMutI	CAGTG	1 cut(s)	508
Cac8I	GCNNGC	1 cut(s)	477
CfoI	GCGC	2 cut(s)	165, 270
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	2 cut(s)	54, 476
CviJI	RGCY	6 cut(s)	31, 145, 195, 316, 448, 544
CviKI_1	RGCY	6 cut(s)	31, 145, 195, 316, 448, 544
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	2 cut(s)	264, 369
DpnI	GATC	1 cut(s)	553
DpnII	GATC	1 cut(s)	551
DraI	TTTAAA	1 cut(s)	606
Eco32I	GATATC	1 cut(s)	423
Eco88I	CYCGRG	1 cut(s)	196
EcoRI	GAATTC	1 cut(s)	178
EcoRII	CCWGG	2 cut(s)	488, 510
EcoRV	GATATC	1 cut(s)	423
EcoT22I	ATGCAT	1 cut(s)	477
FaeI	CATG	2 cut(s)	57, 479
FaiI	YATR	6 cut(s)	55, 458, 473, 477, 613, 637
FatI	CATG	2 cut(s)	53, 475
Fnu4HI	GCNGC	2 cut(s)	172, 271
FokI	GGATG	3 cut(s)	122, 175, 578
Fsp4HI	GCNGC	2 cut(s)	172, 271
FspBI	CTAG	1 cut(s)	546
GlaI	GCGC	2 cut(s)	164, 269
GluI	GCNGC	2 cut(s)	172, 271
GsaI	CCCAGC	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	544
HapII	CCGG	2 cut(s)	33, 541
HhaI	GCGC	2 cut(s)	165, 270
Hin1II	CATG	2 cut(s)	57, 479
Hin6I	GCGC	2 cut(s)	163, 268
HinP1I	GCGC	2 cut(s)	163, 268
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	2 cut(s)	83, 572
HpaII	CCGG	2 cut(s)	33, 541
HphI	GGTGA	3 cut(s)	70, 125, 131
Hpy188I	TCNGA	2 cut(s)	331, 427
Hpy188III	TCNNGA	5 cut(s)	66, 89, 198, 224, 263
HpyAV	CCTTC	6 cut(s)	56, 60, 110, 124, 221, 588
HpyCH4III	ACNGT	1 cut(s)	282
HpyCH4V	TGCA	4 cut(s)	188, 336, 475, 599
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 445
HpyF3I	CTNAG	2 cut(s)	264, 369
Hsp92II	CATG	2 cut(s)	57, 479
HspAI	GCGC	2 cut(s)	163, 268
Kzo9I	GATC	1 cut(s)	551
LmnI	GCTCC	1 cut(s)	302
Lsp1109I	GCAGC	2 cut(s)	183, 282
LweI	GCATC	1 cut(s)	197
MaeI	CTAG	1 cut(s)	546
MaeIII	GTNAC	3 cut(s)	282, 431, 464
MalI	GATC	1 cut(s)	553
MboI	GATC	1 cut(s)	551
MboII	GAAGA	1 cut(s)	454
MflI	RGATCY	1 cut(s)	551
MluCI	AATT	1 cut(s)	178
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	4 cut(s)	115, 127, 379, 604
Mph1103I	ATGCAT	1 cut(s)	477
MseI	TTAA	2 cut(s)	258, 605
MspI	CCGG	2 cut(s)	33, 541
MspR9I	CCNGG	4 cut(s)	33, 490, 512, 541
Mva1269I	GAATGC	1 cut(s)	338
MvaI	CCWGG	2 cut(s)	490, 512
MvnI	CGCG	1 cut(s)	165
MwoI	GCNNNNNNNGC	2 cut(s)	171, 445
NciI	CCSGG	2 cut(s)	33, 541
NdeII	GATC	1 cut(s)	551
NlaIII	CATG	2 cut(s)	57, 479
NmuCI	GTSAC	1 cut(s)	282
NsiI	ATGCAT	1 cut(s)	477
NspI	RCATGY	1 cut(s)	479
PaeI	GCATGC	1 cut(s)	479
PctI	GAATGC	1 cut(s)	338
PfeI	GAWTC	1 cut(s)	572
PkrI	GCNGC	2 cut(s)	173, 272
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
Psp6I	CCWGG	2 cut(s)	488, 510
PspFI	CCCAGC	1 cut(s)	479
PspGI	CCWGG	2 cut(s)	488, 510
PsuI	RGATCY	1 cut(s)	551
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
SaqAI	TTAA	2 cut(s)	258, 605
SatI	GCNGC	2 cut(s)	172, 271
Sau3AI	GATC	1 cut(s)	551
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	4 cut(s)	33, 490, 512, 541
SetI	ASST	6 cut(s)	48, 121, 197, 450, 471, 612
SfaNI	GCATC	1 cut(s)	197
SphI	GCATGC	1 cut(s)	479
Sse9I	AATT	1 cut(s)	178
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	546
StyD4I	CCNGG	4 cut(s)	31, 488, 510, 539
TaaI	ACNGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	376
TasI	AATT	1 cut(s)	178
TatI	WGTACW	1 cut(s)	241
TfiI	GAWTC	1 cut(s)	572
Tru1I	TTAA	2 cut(s)	258, 605
Tru9I	TTAA	2 cut(s)	258, 605
TscAI	CASTG	1 cut(s)	508
TseFI	GTSAC	1 cut(s)	282
TseI	GCWGC	2 cut(s)	171, 270
Tsp45I	GTSAC	1 cut(s)	282
TspDTI	ATGAA	1 cut(s)	42
TspRI	CASTG	1 cut(s)	508
XapI	RAATTY	1 cut(s)	178
XceI	RCATGY	1 cut(s)	479
XspI	CTAG	1 cut(s)	546
Zsp2I	ATGCAT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.