Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003673

Physical Location & Seq

Genomic Coordinates Reverse (-)

42593228 .. 42593695

Gene Structure 468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0342300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTCGCCAATTGGGTGTGTACCAGCACAGAGAACACTAGGTGGAGCCATAGAGAGAGCCTGCGATGAGACTGAGAACCAAGTAGCAATCCTCTTCAACTCGAAGCTCTCCGCCCTTATAAACTCCCTCAATAAGAGACTTCCAGAAGCACAACTCATTTACGTTGACATATATAACCCTTTGTTGTCCATTATCCAAGAGCCTGCTCAAAATGGAACTGTTGAGTTCGGGTCTCTGTGTAACAAAGACACCCCGAGTACTTGCAACGATGCGTCCCAGTACATATTCTGGGATGGCCTTCATCCCATAGAAACAGCTTACAAGATCCTCACCTATGCAATATTAAAGCAATTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006266 GO:0006281 GO:0006284 GO:0006302 GO:0006303 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009628 GO:0009893 GO:0009987 GO:0010033 GO:0010385 GO:0010562 GO:0010604 GO:0010921 GO:0010922 GO:0019219 GO:0019220 GO:0019222 GO:0031323 GO:0031325 GO:0033554 GO:0034641 GO:0035303 GO:0035306 GO:0035510 GO:0036293 GO:0042221 GO:0042493 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045935 GO:0045937 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051336 GO:0051345 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070482 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901968 GO:1901969 GO:1901971 GO:1901972 GO:1902544 GO:1902546

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

BRCT PTCB-BRCT

Protein Analysis

119

Amino Acids

13.1

Weight (kDa)

4.78

Isoelectric Point (pI)

52.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	2 - 112	1.7e-12	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80420 AT1G80420 AT1G80420 AT1G80420 AT1G80420
fragaria_vesca	FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910
malus_domestica	MD17G1197800.v1.1
prunus_persica	Prupe.3G073900_v2.0.a1 Prupe.3G073900_v2.0.a1 Prupe.3G073900_v2.0.a1
pyrus_communis	pycom17g20270
rosa_chinensis	RchiOBHm_Chr2g0137421
rosa_laevigata	RLG00000019657
rosa_multiflora	Rmu_sc0000765.1_g000002 Rmu_ssc0000312.1_g000013
rosa_roxburghii	Rroxscaffold_2G00107070
rosa_rugosa	Rorug02G0342300 Rorug02G0342400 Rorug02G0342400 Rorug02G0342500
rosa_samantha	Rh2AG390400 Rh2BG397800 Rh2CG377700 Rh2DG413100
rosa_wichuraiana	Rw0G004550 Rw2G031990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	119
AciI	CCGC	1 cut(s)	111
AclWI	GGATC	1 cut(s)	319
AdeI	CACNNNGTG	1 cut(s)	41
AfaI	GTAC	3 cut(s)	21, 259, 281
AgsI	TTSAA	1 cut(s)	97
AluBI	AGCT	2 cut(s)	106, 317
AluI	AGCT	2 cut(s)	106, 317
Alw26I	GTCTC	3 cut(s)	62, 130, 237
AlwI	GGATC	1 cut(s)	319
Ama87I	CYCGRG	1 cut(s)	253
AoxI	GGCC	1 cut(s)	295
AsuHPI	GGTGA	1 cut(s)	322
AvaI	CYCGRG	1 cut(s)	253
BccI	CCATC	1 cut(s)	287
BcoDI	GTCTC	3 cut(s)	62, 130, 237
BfaI	CTAG	1 cut(s)	38
BmcAI	AGTACT	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	46
BmrI	ACTGGG	1 cut(s)	271
BmsI	GCATC	1 cut(s)	259
BmuI	ACTGGG	1 cut(s)	271
BsaI	GGTCTC	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	277
BseGI	GGATG	2 cut(s)	298, 301
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	1 cut(s)	277
BshFI	GGCC	1 cut(s)	297
BsiHKCI	CYCGRG	1 cut(s)	253
BslFI	GGGAC	1 cut(s)	259
BsmAI	GTCTC	3 cut(s)	62, 130, 237
BsmFI	GGGAC	1 cut(s)	259
BsnI	GGCC	1 cut(s)	297
Bso31I	GGTCTC	1 cut(s)	237
BsoBI	CYCGRG	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	324
BspACI	CCGC	1 cut(s)	111
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	46
BspPI	GGATC	1 cut(s)	319
BspTNI	GGTCTC	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	277
BssMI	GATC	1 cut(s)	324
Bst4CI	ACNGT	1 cut(s)	220
Bst6I	CTCTTC	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	61, 204
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	298, 301
BstKTI	GATC	1 cut(s)	327
BstMAI	GTCTC	3 cut(s)	62, 130, 237
BstMBI	GATC	1 cut(s)	324
BstX2I	RGATCY	1 cut(s)	324
BstYI	RGATCY	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	297
BtgZI	GCGATG	1 cut(s)	78
BtsCI	GGATG	2 cut(s)	298, 301
Cac8I	GCNNGC	2 cut(s)	61, 204
CseI	GACGC	1 cut(s)	261
Csp6I	GTAC	3 cut(s)	20, 258, 280
CviJI	RGCY	6 cut(s)	47, 59, 106, 202, 297, 317
CviKI_1	RGCY	6 cut(s)	47, 59, 106, 202, 297, 317
CviQI	GTAC	3 cut(s)	20, 258, 280
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	1 cut(s)	326
DpnII	GATC	1 cut(s)	324
DraIII	CACNNNGTG	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	100
Eco31I	GGTCTC	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	253
FaiI	YATR	8 cut(s)	50, 119, 170, 172, 174, 284, 308, 336
FaqI	GGGAC	1 cut(s)	259
FokI	GGATG	2 cut(s)	288, 305
FspBI	CTAG	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	297
HgaI	GACGC	1 cut(s)	261
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HphI	GGTGA	1 cut(s)	322
Hpy166II	GTNNAC	2 cut(s)	20, 166
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	2 cut(s)	20, 166
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	1 cut(s)	220
HpyCH4IV	ACGT	1 cut(s)	162
HpyCH4V	TGCA	2 cut(s)	264, 338
HpyF3I	CTNAG	1 cut(s)	72
HpySE526I	ACGT	1 cut(s)	162
Kzo9I	GATC	1 cut(s)	324
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	6 cut(s)	36, 73, 156, 216, 274, 290
LweI	GCATC	1 cut(s)	259
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	1 cut(s)	326
MboI	GATC	1 cut(s)	324
MboII	GAAGA	1 cut(s)	85
MfeI	CAATTG	1 cut(s)	9
MflI	RGATCY	1 cut(s)	324
MluCI	AATT	2 cut(s)	9, 350
MnlI	CCTC	3 cut(s)	101, 137, 338
MseI	TTAA	2 cut(s)	344, 353
MunI	CAATTG	1 cut(s)	9
NdeII	GATC	1 cut(s)	324
NlaIV	GGNNCC	1 cut(s)	46
PsiI	TTATAA	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	324
RsaI	GTAC	3 cut(s)	21, 259, 281
RsaNI	GTAC	3 cut(s)	20, 258, 280
SaqAI	TTAA	2 cut(s)	344, 353
Sau3AI	GATC	1 cut(s)	324
ScaI	AGTACT	1 cut(s)	259
SetI	ASST	5 cut(s)	43, 108, 165, 319, 335
SfaNI	GCATC	1 cut(s)	259
Sse9I	AATT	2 cut(s)	9, 350
SsiI	CCGC	1 cut(s)	111
SspI	AATATT	1 cut(s)	342
SspMI	CTAG	1 cut(s)	38
TaaI	ACNGT	1 cut(s)	220
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	1 cut(s)	101
TasI	AATT	2 cut(s)	9, 350
TatI	WGTACW	2 cut(s)	257, 279
Tru1I	TTAA	2 cut(s)	344, 353
Tru9I	TTAA	2 cut(s)	344, 353
TspDTI	ATGAA	1 cut(s)	290
XspI	CTAG	1 cut(s)	38
ZrmI	AGTACT	1 cut(s)	259

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.