Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00170

Orthogroup ID

OG0003673

Physical Location & Seq

Genomic Coordinates Forward (+)

49921 .. 53356

Gene Structure 3436 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G004550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGTCTCATTCCAAGAATGGTGCTAATAAGCCCGGCAACCGAAACCTTCCTTCATGGGTGAGTTCAAGAGACAATGAGAGTGAGCCTCCTGAAAAGAAACCAAATGGGAATGGTGAAGGTGAGGAAAGGAAGGAGGGTCAAAAGCCCACGCAAGGGAAAGGGTGGGGAAGCAGCAAGAATTCTGGTGCATCCAGCTCGGGAACAACAAATGTGTCCAAACTTCTGGAAGGGGTTGTGTTTGTACTATCTGGTTTTGTTAATCCTGAGCGCAGCATTTTACGGTCACAGGCGTTGGAAATGGGAGCAGAATATCAGCCTGATTGGAGTTCAGAATGCACTCTCTTGGTTTGTGCGTTTTCAAACACCCCTAAGTTTCGACAAGTTGAGGCAAATTGTGGAACTATTGTTTCAAAGGAATGGATATCAGAGTGTTACACGCAGAAGAAGCTTGTTGATATAGAAAGTTACCTTATGCATGCTGGGAAACCCTGGCGTAAAAGCAGTGTTTCCCAGGACAACAGGCAAGACCAGAGATTATCCCGGCCTAGTAGATCTAAAAAGCAGGATGGAGATTCTCCTTCAAAACCAACTGCCTCTGCAACTTTAAAGCATGTCAAAGCTGCTGACTCTGTTAGAGAGTGCTTTTCTCCATCTGAAGTGAAGAAGTGGGCAGTCGATGATTTGAAGAAGACGATATCATGGCTGGAGAATCAAGAAGAAAAGCCAGACCCAGATGAGATAAAGCAGATAGCAGCTGAAGGGATTTTAACTTGTTTACAAGATGCCATAGCTTCTCTGGAACAAAAACAGGATGTCCAGCAGATAACTGAACAATGGAATTTCATTCCTCATGTAGTTGAGGAGCTTGCAAAGCTCGAAAGCACAGGAAATAACTCTGTGGCCATATCAAAGGAAGATCTTTGCAGACAGGCTATGGACTGTAAACGAATTTATGAGGTAGAACTTCATAATTTGGATGATGATTCTTCAAGGAAGAAAAAACGAAAGACTGGAAGACGAGAGAAGGACAAAGGGGAAACTGAAGCACTATGCAGCGGTGCCGCAGGATATGACAGTGATGAAACACTTGAGATGACAGAAGAGGAAATCGATCTTGCATATAATACTATAGCTTCCAAGATCTCTAATACAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006266 GO:0006281 GO:0006284 GO:0006302 GO:0006303 GO:0006304 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009628 GO:0009893 GO:0009987 GO:0010033 GO:0010385 GO:0010562 GO:0010604 GO:0010921 GO:0010922 GO:0019219 GO:0019220 GO:0019222 GO:0031323 GO:0031325 GO:0033554 GO:0034641 GO:0035303 GO:0035306 GO:0035510 GO:0036293 GO:0042221 GO:0042493 GO:0043085 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0044728 GO:0045935 GO:0045937 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051336 GO:0051345 GO:0051716 GO:0060255 GO:0065007 GO:0065009 GO:0070482 GO:0070988 GO:0071704 GO:0080090 GO:0080111 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901968 GO:1901969 GO:1901971 GO:1901972 GO:1902544 GO:1902546

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

BRCT PTCB-BRCT

Protein Analysis

385

Amino Acids

42.85

Weight (kDa)

5.49

Isoelectric Point (pI)

51.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRCT	PF00533	71 - 145	2.9e-11	BRCA1 C Terminus (BRCT) domain
BRCT_2	PF16589	73 - 156	3.8e-06	BRCT domain
PTCB-BRCT	PF12738	79 - 140	1.3e-07	twin BRCT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003673)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80420 AT1G80420 AT1G80420 AT1G80420 AT1G80420
fragaria_vesca	FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910 FvH4_6g30910
malus_domestica	MD17G1197800.v1.1
prunus_persica	Prupe.3G073900_v2.0.a1 Prupe.3G073900_v2.0.a1 Prupe.3G073900_v2.0.a1
pyrus_communis	pycom17g20270
rosa_chinensis	RchiOBHm_Chr2g0137421
rosa_laevigata	RLG00000019657
rosa_multiflora	Rmu_sc0000765.1_g000002 Rmu_ssc0000312.1_g000013
rosa_roxburghii	Rroxscaffold_2G00107070
rosa_rugosa	Rorug02G0342300 Rorug02G0342400 Rorug02G0342400 Rorug02G0342500
rosa_samantha	Rh2AG390400 Rh2BG397800 Rh2CG377700 Rh2DG413100
rosa_wichuraiana	Rw0G004550 Rw2G031990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1058
AciI	CCGC	2 cut(s)	1056, 1062
AcoI	YGGCCR	1 cut(s)	900
AcsI	RAATTY	3 cut(s)	178, 838, 948
AcuI	CTGAAG	3 cut(s)	675, 777, 1062
AfaI	GTAC	1 cut(s)	243
AfiI	CCNNNNNNNGG	2 cut(s)	152, 153
AgsI	TTSAA	6 cut(s)	66, 360, 411, 582, 685, 990
AjnI	CCWGG	2 cut(s)	488, 510
AluBI	AGCT	8 cut(s)	195, 448, 620, 755, 791, 865, 874, 1133
AluI	AGCT	8 cut(s)	195, 448, 620, 755, 791, 865, 874, 1133
Alw26I	GTCTC	2 cut(s)	9, 63
Ama87I	CYCGRG	1 cut(s)	196
AoxI	GGCC	2 cut(s)	542, 900
ApeKI	GCWGC	5 cut(s)	171, 270, 620, 752, 1053
ApoI	RAATTY	3 cut(s)	178, 838, 948
AspLEI	GCGC	1 cut(s)	270
AsuC2I	CCSGG	2 cut(s)	33, 541
AsuHPI	GGTGA	3 cut(s)	70, 125, 131
AvaI	CYCGRG	1 cut(s)	196
BalI	TGGCCA	1 cut(s)	902
BanI	GGYRCC	1 cut(s)	1058
BbsI	GAAGAC	2 cut(s)	695, 1021
BbvI	GCAGC	5 cut(s)	183, 282, 607, 764, 1065
BccI	CCATC	2 cut(s)	560, 658
BcgI	CGANNNNNNTGC	2 cut(s)	177, 211
BciT130I	CCWGG	2 cut(s)	490, 512
BcnI	CCSGG	2 cut(s)	33, 541
BcoDI	GTCTC	2 cut(s)	9, 63
BfaI	CTAG	1 cut(s)	546
BfmI	CTRYAG	1 cut(s)	1128
BglII	AGATCT	3 cut(s)	551, 916, 1140
BisI	GCNGC	6 cut(s)	172, 271, 621, 753, 1054, 1062
BlsI	GCNGC	6 cut(s)	173, 272, 622, 754, 1055, 1063
Bme1390I	CCNGG	4 cut(s)	33, 490, 512, 541
BmeT110I	CYCGRG	1 cut(s)	196
BmiI	GGNNCC	1 cut(s)	1060
BmrFI	CCNGG	4 cut(s)	33, 490, 512, 541
BmsI	GCATC	2 cut(s)	197, 772
BpiI	GAAGAC	2 cut(s)	695, 1021
BplI	GAGNNNNNCTC	2 cut(s)	70, 102
BpmI	CTGGAG	1 cut(s)	725
Bpu10I	CCTNAGC	1 cut(s)	264
BpuEI	CTTGAG	1 cut(s)	1109
BpuMI	CCSGG	2 cut(s)	33, 541
Bsa29I	ATCGAT	1 cut(s)	1110
BsaJI	CCNNGG	2 cut(s)	488, 510
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 153
Bse1I	ACTGG	1 cut(s)	1015
BseBI	CCWGG	2 cut(s)	490, 512
BseCI	ATCGAT	1 cut(s)	1110
BseDI	CCNNGG	2 cut(s)	488, 510
BseGI	GGATG	4 cut(s)	188, 571, 817, 982
BseLI	CCNNNNNNNGG	2 cut(s)	152, 153
BseMII	CTCAG	1 cut(s)	255
BseNI	ACTGG	1 cut(s)	1015
BseRI	GAGGAG	1 cut(s)	875
BseXI	GCAGC	5 cut(s)	183, 282, 607, 764, 1065
BseYI	CCCAGC	1 cut(s)	479
BshFI	GGCC	2 cut(s)	544, 902
BshNI	GGYRCC	1 cut(s)	1058
BshVI	ATCGAT	1 cut(s)	1110
BsiHKCI	CYCGRG	1 cut(s)	196
BsiSI	CCGG	2 cut(s)	33, 541
BslI	CCNNNNNNNGG	2 cut(s)	152, 153
BsmAI	GTCTC	2 cut(s)	9, 63
BsmI	GAATGC	1 cut(s)	338
BsnI	GGCC	2 cut(s)	544, 902
BsoBI	CYCGRG	1 cut(s)	196
Bsp143I	GATC	4 cut(s)	551, 916, 1111, 1140
BspACI	CCGC	2 cut(s)	1056, 1062
BspANI	GGCC	2 cut(s)	544, 902
BspCNI	CTCAG	1 cut(s)	256
BspDI	ATCGAT	1 cut(s)	1110
BspLI	GGNNCC	1 cut(s)	1060
BspT107I	GGYRCC	1 cut(s)	1058
BsrI	ACTGG	1 cut(s)	1015
BssECI	CCNNGG	2 cut(s)	488, 510
BssMI	GATC	4 cut(s)	551, 916, 1111, 1140
Bst2UI	CCWGG	2 cut(s)	490, 512
Bst4CI	ACNGT	3 cut(s)	282, 941, 1076
Bst6I	CTCTTC	1 cut(s)	1095
BstC8I	GCNNGC	2 cut(s)	477, 867
BstDEI	CTNAG	2 cut(s)	264, 369
BstF5I	GGATG	4 cut(s)	188, 571, 817, 982
BstHHI	GCGC	1 cut(s)	270
BstKTI	GATC	4 cut(s)	554, 919, 1114, 1143
BstMAI	GTCTC	2 cut(s)	9, 63
BstMBI	GATC	4 cut(s)	551, 916, 1111, 1140
BstMWI	GCNNNNNNNGC	2 cut(s)	445, 871
BstNI	CCWGG	2 cut(s)	490, 512
BstNSI	RCATGY	2 cut(s)	479, 614
BstSCI	CCNGG	4 cut(s)	31, 488, 510, 539
BstSFI	CTRYAG	1 cut(s)	1128
BstV1I	GCAGC	5 cut(s)	183, 282, 607, 764, 1065
BstV2I	GAAGAC	2 cut(s)	695, 1021
BstX2I	RGATCY	3 cut(s)	551, 916, 1140
BstXI	CCANNNNNNTGG	1 cut(s)	223
BstYI	RGATCY	3 cut(s)	551, 916, 1140
Bsu15I	ATCGAT	1 cut(s)	1110
BsuRI	GGCC	2 cut(s)	544, 902
BsuTUI	ATCGAT	1 cut(s)	1110
BtsCI	GGATG	4 cut(s)	188, 571, 817, 982
BtsI	GCAGTG	1 cut(s)	508
BtsIMutI	CAGTG	2 cut(s)	508, 1081
Cac8I	GCNNGC	2 cut(s)	477, 867
CfoI	GCGC	1 cut(s)	270
ClaI	ATCGAT	1 cut(s)	1110
Csp6I	GTAC	1 cut(s)	242
CviAII	CATG	5 cut(s)	54, 476, 611, 699, 851
CviQI	GTAC	1 cut(s)	242
DdeI	CTNAG	2 cut(s)	264, 369
DpnI	GATC	4 cut(s)	553, 918, 1113, 1142
DpnII	GATC	4 cut(s)	551, 916, 1111, 1140
DraI	TTTAAA	1 cut(s)	606
EaeI	YGGCCR	1 cut(s)	900
Eam1104I	CTCTTC	1 cut(s)	1095
EarI	CTCTTC	1 cut(s)	1095
Eco32I	GATATC	2 cut(s)	423, 696
Eco57I	CTGAAG	3 cut(s)	675, 777, 1062
Eco88I	CYCGRG	1 cut(s)	196
EcoRI	GAATTC	1 cut(s)	178
EcoRII	CCWGG	2 cut(s)	488, 510
EcoRV	GATATC	2 cut(s)	423, 696
EcoT22I	ATGCAT	1 cut(s)	477
FaeI	CATG	5 cut(s)	57, 479, 614, 702, 854
FatI	CATG	5 cut(s)	53, 475, 610, 698, 850
Fnu4HI	GCNGC	6 cut(s)	172, 271, 621, 753, 1054, 1062
FokI	GGATG	4 cut(s)	175, 578, 824, 989
Fsp4HI	GCNGC	6 cut(s)	172, 271, 621, 753, 1054, 1062
FspBI	CTAG	1 cut(s)	546
GlaI	GCGC	1 cut(s)	269
GluI	GCNGC	6 cut(s)	172, 271, 621, 753, 1054, 1062
GsaI	CCCAGC	1 cut(s)	483
GsuI	CTGGAG	1 cut(s)	725
HaeIII	GGCC	2 cut(s)	544, 902
HapII	CCGG	2 cut(s)	33, 541
HhaI	GCGC	1 cut(s)	270
Hin1II	CATG	5 cut(s)	57, 479, 614, 702, 854
Hin6I	GCGC	1 cut(s)	268
HinP1I	GCGC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	4 cut(s)	572, 626, 709, 983
HpaII	CCGG	2 cut(s)	33, 541
HphI	GGTGA	3 cut(s)	70, 125, 131
Hpy166II	GTNNAC	2 cut(s)	776, 944
Hpy188I	TCNGA	3 cut(s)	331, 427, 655
Hpy188III	TCNNGA	7 cut(s)	66, 89, 198, 224, 263, 713, 797
Hpy8I	GTNNAC	2 cut(s)	776, 944
HpyAV	CCTTC	8 cut(s)	56, 60, 110, 124, 221, 588, 752, 1018
HpyCH4III	ACNGT	3 cut(s)	282, 941, 1076
HpyCH4V	TGCA	8 cut(s)	188, 336, 475, 599, 869, 924, 1053, 1118
HpyF10VI	GCNNNNNNNGC	2 cut(s)	445, 871
HpyF3I	CTNAG	2 cut(s)	264, 369
Hsp92II	CATG	5 cut(s)	57, 479, 614, 702, 854
HspAI	GCGC	1 cut(s)	268
Kzo9I	GATC	4 cut(s)	551, 916, 1111, 1140
LmnI	GCTCC	2 cut(s)	302, 862
Lsp1109I	GCAGC	5 cut(s)	183, 282, 607, 764, 1065
LweI	GCATC	2 cut(s)	197, 772
MaeI	CTAG	1 cut(s)	546
MaeIII	GTNAC	3 cut(s)	282, 431, 464
MalI	GATC	4 cut(s)	553, 918, 1113, 1142
MboI	GATC	4 cut(s)	551, 916, 1111, 1140
MflI	RGATCY	3 cut(s)	551, 916, 1140
MlsI	TGGCCA	1 cut(s)	902
MluCI	AATT	5 cut(s)	178, 391, 838, 948, 970
MluNI	TGGCCA	1 cut(s)	902
MlyI	GAGTC	1 cut(s)	620
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	9 cut(s)	96, 115, 127, 379, 604, 853, 858, 949, 1096
Mox20I	TGGCCA	1 cut(s)	902
Mph1103I	ATGCAT	1 cut(s)	477
MscI	TGGCCA	1 cut(s)	902
MseI	TTAA	3 cut(s)	258, 605, 767
Msp20I	TGGCCA	1 cut(s)	902
MspA1I	CMGCKG	2 cut(s)	755, 1056
MspI	CCGG	2 cut(s)	33, 541
MspR9I	CCNGG	4 cut(s)	33, 490, 512, 541
Mva1269I	GAATGC	1 cut(s)	338
MvaI	CCWGG	2 cut(s)	490, 512
MwoI	GCNNNNNNNGC	2 cut(s)	445, 871
NciI	CCSGG	2 cut(s)	33, 541
NdeII	GATC	4 cut(s)	551, 916, 1111, 1140
NlaIII	CATG	5 cut(s)	57, 479, 614, 702, 854
NlaIV	GGNNCC	1 cut(s)	1060
NmuCI	GTSAC	1 cut(s)	282
NsiI	ATGCAT	1 cut(s)	477
NspI	RCATGY	2 cut(s)	479, 614
PaeI	GCATGC	1 cut(s)	479
PctI	GAATGC	1 cut(s)	338
PfeI	GAWTC	3 cut(s)	572, 709, 983
PkrI	GCNGC	6 cut(s)	173, 272, 622, 754, 1055, 1063
PleI	GAGTC	1 cut(s)	620
PpsI	GAGTC	1 cut(s)	620
Psp6I	CCWGG	2 cut(s)	488, 510
PspFI	CCCAGC	1 cut(s)	479
PspGI	CCWGG	2 cut(s)	488, 510
PspN4I	GGNNCC	1 cut(s)	1060
PsuI	RGATCY	3 cut(s)	551, 916, 1140
PvuII	CAGCTG	1 cut(s)	755
RsaI	GTAC	1 cut(s)	243
RsaNI	GTAC	1 cut(s)	242
SaqAI	TTAA	3 cut(s)	258, 605, 767
SatI	GCNGC	6 cut(s)	172, 271, 621, 753, 1054, 1062
Sau3AI	GATC	4 cut(s)	551, 916, 1111, 1140
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	4 cut(s)	33, 490, 512, 541
SfaNI	GCATC	2 cut(s)	197, 772
SfcI	CTRYAG	1 cut(s)	1128
SmlI	CTYRAG	1 cut(s)	1088
SmoI	CTYRAG	1 cut(s)	1088
SphI	GCATGC	1 cut(s)	479
Sse9I	AATT	5 cut(s)	178, 391, 838, 948, 970
SsiI	CCGC	2 cut(s)	1056, 1062
SspMI	CTAG	1 cut(s)	546
StyD4I	CCNGG	4 cut(s)	31, 488, 510, 539
TaaI	ACNGT	3 cut(s)	282, 941, 1076
TaqI	TCGA	4 cut(s)	376, 675, 876, 1110
TasI	AATT	5 cut(s)	178, 391, 838, 948, 970
TatI	WGTACW	1 cut(s)	241
TauI	GCSGC	1 cut(s)	1064
TfiI	GAWTC	3 cut(s)	572, 709, 983
Tru1I	TTAA	3 cut(s)	258, 605, 767
Tru9I	TTAA	3 cut(s)	258, 605, 767
TscAI	CASTG	2 cut(s)	508, 1081
TseFI	GTSAC	1 cut(s)	282
TseI	GCWGC	5 cut(s)	171, 270, 620, 752, 1053
Tsp45I	GTSAC	1 cut(s)	282
TspDTI	ATGAA	4 cut(s)	42, 832, 956, 1095
TspRI	CASTG	2 cut(s)	508, 1081
XapI	RAATTY	3 cut(s)	178, 838, 948
XceI	RCATGY	2 cut(s)	479, 614
XcmI	CCANNNNNNNNNTGG	1 cut(s)	793
XspI	CTAG	1 cut(s)	546
Zsp2I	ATGCAT	1 cut(s)	477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.